FvH4_2g15030

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
13191214 .. 13195179
3966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15030.t1

Sequence Viewer

Length: 1746 bp
ATGTCTTTAGTCAGGCCAGTGGAGCTGTCTGCCACATCGTACAGAAAGTCGAAACTCTACTCTCTGAAGGGAAGCAATGACACTTCCACCCAAACATTTGGTGCCGATAAGAGTAATACCATGTATACGACTGATTCTTACTCCACCGAGAGTTATGAGTTCCTTGACTCCCCAAGTGAAGAAGTTGCGCATCCATCTAGCTCTAGCATTACTGGAAGTTCGTTTAATGAGCATGGTGCCTCATTTTATCCACGCAGAGCTGGATCTGTTTCCTCTTTCACCACTCAAAATCCATCTAGTACTTCTATGTCCACAAGGCTTCATGATGCTTACCGAACCAACATTGACTCAGATTACTTAGAGAGTCAAAGCCCAGATGCTGTTAGCTTTGATGATGATAAGATGAGATTGAAGCTTCAAGAATTGGAGAGAGCACTGCTTGAGGACAACGATGATGAACATGATGAGGAGATGATTGGCAGTGGTCAAAGCATGGAAATTGATGGTGAATGGACTGAACCAATCCAGAATGCATTGCTCCATGACTCACCCAAGGAGTCTTCATCATCTGATTCTTATCTAAGCAGCATCAGCAGCAACAAAGAAATATCAGGAACATCTCTTCGTACACCCAAGCAGCTGCTCTTTGACTGTGCTAGTGCACTTTCAGAGGGAAATATTGAAGAAGCATCAACCATGATAAATGAGCTTCGCCAGCTGGTCTCAATTCAGGGAGATCCTCATCAGAGGATTGCAGCATATATGGTCGAAGGCCTTGCAGCTCGCATGGCTTCCTCAGGAAAATTTCTCTATAGAGCTTTGAAATGCAAGGAACCCCCATCCTCTTATCGCCTTGCAGCCATGCAAGTTCTTTTTGAGGTGTGCCCTTGCTTTAAATTTGGTTTTATGGCAGCAAATGGAGCCATTATAGAAGCTACTAAAGATGACAAGAGAGTCCATATAATAGATTTTGACATAAACCAGGGGAATCAGTACATCACACTCATACAAACACTTGCTCAACTGCCCGGTAAGCCACTGCACTTGAGGTTGACGGGCATTGATGACCCTGAGTCAGTTCAGCGTCCCGTTGGGGGACTTAATACCATCGGCCAAAGGCTAGAGCAGCTAGCAGAAGGACTTGGTGTTTCGTTTGAGTTTCAAGCAGTTGCCTCAAAGACTTCAATCGTCAGTCCTTCAATGCTGGACTGTAGGCCAGGCGAAGCACTCGTTGTAAATTTTGCTTTTCAGCTTCACCACATGCCCGATGAGAGTGTTTCGACGGTAAACCAGAGAGACCAGCTTCTCCGGCTGGCAAAGAGCTTGAGGCCAAAACTCGTCACAGTTGTGGAACAAGATGTGAACACCAATACTACCCCATTCTTCCCAAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTCTTTGATTCCCTTGAAGCAGCTATACCAAGGGAGAGCCAGGATAGGATGAATGTTGAAAAGCAGTGCCTTGCACGGGATATAGTAAACATCGTTGCATGCGAAGGCGAGGAAAGAATAGAGCGGTATGAGGTTGCAGGGAAGTGGAGGGCCAGGATGGCCATGGCTGGGTTTACTTCAAGTCCGATGAGTACAAGTGTTACTGATTTGATTCGGGAACTTATCAGAATGTATTGTGACAGGTACAAGATAAAGGAAGAAATGGGTGCACTTCATTTTGGATGGGAAGACAAAACCTTGATTGTTGCTTCAGCATGGAGGTGA

Protein Analysis

582

Amino Acids

64.8

Weight (kDa)

4.99

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 212 - 581 8.3e-138 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 953
Acc16I TGCGCA 1 cut(s) 189
AccB1I GGYRCC 2 cut(s) 101, 236
AccBSI CCGCTC 1 cut(s) 1546
AccI GTMKAC 1 cut(s) 125
AciI CCGC 1 cut(s) 1546
AclWI GGATC 2 cut(s) 271, 731
AcoI YGGCCR 2 cut(s) 1111, 1581
AcsI RAATTY 3 cut(s) 803, 896, 1237
AcuI CTGAAG 2 cut(s) 86, 1716
AfaI GTAC 6 cut(s) 41, 301, 628, 995, 1615, 1667
AfiI CCNNNNNNNGG 3 cut(s) 1094, 1498, 1590
AhdI GACNNNNNGTC 1 cut(s) 1072
AjnI CCWGG 4 cut(s) 981, 1216, 1461, 1574
AleI CACNNNNGTG 1 cut(s) 1346
Alw21I GWGCWC 3 cut(s) 436, 664, 1693
Alw26I GTCTC 2 cut(s) 727, 1290
Alw44I GTGCAC 2 cut(s) 660, 1689
AlwI GGATC 2 cut(s) 271, 731
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 7 cut(s) 14, 772, 1111, 1214, 1328, 1572, 1581
ApaLI GTGCAC 2 cut(s) 660, 1689
ApoI RAATTY 3 cut(s) 803, 896, 1237
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 1572
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 4 cut(s) 271, 518, 540, 1247
AsuNHI GCTAGC 1 cut(s) 1129
AxyI CCTNAGG 1 cut(s) 796
BaeGI GKGCMC 3 cut(s) 664, 887, 1693
BalI TGGCCA 1 cut(s) 1583
BanI GGYRCC 2 cut(s) 101, 236
BarI GAAGNNNNNNTAC 2 cut(s) 1431, 1463
BbsI GAAGAC 2 cut(s) 552, 1716
Bbv12I GWGCWC 3 cut(s) 436, 664, 1693
BccI CCATC 7 cut(s) 202, 301, 497, 847, 1115, 1573, 1698
BcgI CGANNNNNNTGC 2 cut(s) 758, 792
BciT130I CCWGG 4 cut(s) 983, 1218, 1463, 1576
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 2 cut(s) 727, 1290
BfaI CTAG 6 cut(s) 198, 204, 297, 657, 1121, 1130
BfmI CTRYAG 2 cut(s) 811, 1210
BglI GCCNNNNNGGC 1 cut(s) 1580
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 5 cut(s) 983, 1029, 1218, 1463, 1576
BmeRI GACNNNNNGTC 1 cut(s) 1072
BmgT120I GGNCC 1 cut(s) 1572
BmiI GGNNCC 4 cut(s) 103, 238, 834, 922
BmrFI CCNGG 5 cut(s) 983, 1029, 1218, 1463, 1576
BmsI GCATC 5 cut(s) 199, 316, 367, 597, 698
BmtI GCTAGC 1 cut(s) 1133
BpiI GAAGAC 2 cut(s) 552, 1716
BpuEI CTTGAG 3 cut(s) 461, 1066, 1345
BpuMI CCSGG 1 cut(s) 1029
BsaBI GATNNNNATC 2 cut(s) 576, 741
BsaI GGTCTC 2 cut(s) 727, 1290
BsaJI CCNNGG 4 cut(s) 552, 982, 1451, 1584
Bsc4I CCNNNNNNNGG 3 cut(s) 1094, 1498, 1590
Bse1I ACTGG 2 cut(s) 17, 217
Bse21I CCTNAGG 1 cut(s) 796
Bse3DI GCAATG 2 cut(s) 82, 533
Bse8I GATNNNNATC 2 cut(s) 576, 741
BseBI CCWGG 4 cut(s) 983, 1218, 1463, 1576
BseDI CCNNGG 4 cut(s) 552, 982, 1451, 1584
BseGI GGATG 5 cut(s) 190, 839, 1476, 1584, 1709
BseJI GATNNNNATC 2 cut(s) 576, 741
BseLI CCNNNNNNNGG 3 cut(s) 1094, 1498, 1590
BseMI GCAATG 2 cut(s) 82, 533
BseMII CTCAG 3 cut(s) 363, 810, 1062
BseNI ACTGG 2 cut(s) 17, 217
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 3 cut(s) 664, 887, 1693
BseYI CCCAGC 1 cut(s) 1589
BsgI GTGCAG 1 cut(s) 1025
BshFI GGCC 7 cut(s) 16, 774, 1113, 1216, 1330, 1574, 1583
BshNI GGYRCC 2 cut(s) 101, 236
BsiHKAI GWGCWC 3 cut(s) 436, 664, 1693
BsiSI CCGG 2 cut(s) 1029, 1309
BslFI GGGAC 2 cut(s) 1071, 1110
BslI CCNNNNNNNGG 3 cut(s) 1094, 1498, 1590
BsmAI GTCTC 2 cut(s) 727, 1290
BsmFI GGGAC 2 cut(s) 1071, 1110
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 7 cut(s) 16, 774, 1113, 1216, 1330, 1574, 1583
Bso31I GGTCTC 2 cut(s) 727, 1290
Bsp1286I GDGCHC 4 cut(s) 436, 664, 887, 1693
Bsp143I GATC 2 cut(s) 263, 736
Bsp19I CCATGG 1 cut(s) 1584
BspACI CCGC 1 cut(s) 1546
BspANI GGCC 7 cut(s) 16, 774, 1113, 1216, 1330, 1574, 1583
BspCNI CTCAG 3 cut(s) 362, 809, 1063
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 4 cut(s) 103, 238, 834, 922
BspOI GCTAGC 1 cut(s) 1133
BspPI GGATC 2 cut(s) 271, 731
BspT107I GGYRCC 2 cut(s) 101, 236
BspTNI GGTCTC 2 cut(s) 727, 1290
BsrBI CCGCTC 1 cut(s) 1546
BsrDI GCAATG 2 cut(s) 82, 533
BsrI ACTGG 2 cut(s) 17, 217
BssECI CCNNGG 4 cut(s) 552, 982, 1451, 1584
BssMI GATC 2 cut(s) 263, 736
BssNAI GTATAC 1 cut(s) 126
BssT1I CCWWGG 3 cut(s) 552, 1451, 1584
Bst1107I GTATAC 1 cut(s) 126
Bst2UI CCWGG 4 cut(s) 983, 1218, 1463, 1576
Bst4CI ACNGT 4 cut(s) 653, 1211, 1285, 1345
Bst6I CTCTTC 1 cut(s) 627
BstC8I GCNNGC 5 cut(s) 716, 784, 1131, 1314, 1522
BstDEI CTNAG 5 cut(s) 349, 358, 581, 796, 1071
BstDSI CCRYGG 1 cut(s) 1584
BstF5I GGATG 5 cut(s) 190, 839, 1476, 1584, 1709
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 266, 739
BstMAI GTCTC 2 cut(s) 727, 1290
BstMBI GATC 2 cut(s) 263, 736
BstNI CCWGG 4 cut(s) 983, 1218, 1463, 1576
BstNSI RCATGY 2 cut(s) 1264, 1524
BstSCI CCNGG 5 cut(s) 981, 1027, 1216, 1461, 1574
BstSFI CTRYAG 2 cut(s) 811, 1210
BstSLI GKGCMC 3 cut(s) 664, 887, 1693
BstV2I GAAGAC 2 cut(s) 552, 1716
BstX2I RGATCY 2 cut(s) 263, 736
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 2 cut(s) 263, 736
BstZ17I GTATAC 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 796
BsuRI GGCC 7 cut(s) 16, 774, 1113, 1216, 1330, 1574, 1583
BtgI CCRYGG 1 cut(s) 1584
BtsCI GGATG 5 cut(s) 190, 839, 1476, 1584, 1709
BtsI GCAGTG 4 cut(s) 434, 487, 1037, 1493
BtsIMutI CAGTG 5 cut(s) 24, 434, 487, 1037, 1493
Cac8I GCNNGC 5 cut(s) 716, 784, 1131, 1314, 1522
CaiI CAGNNNCTG 1 cut(s) 380
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 1572
CseI GACGC 1 cut(s) 1073
Csp6I GTAC 6 cut(s) 40, 300, 627, 994, 1614, 1666
CspCI CAANNNNNGTGG 2 cut(s) 1026, 1061
CviQI GTAC 6 cut(s) 40, 300, 627, 994, 1614, 1666
DdeI CTNAG 5 cut(s) 349, 358, 581, 796, 1071
DpnI GATC 2 cut(s) 265, 738
DpnII GATC 2 cut(s) 263, 736
DraI TTTAAA 1 cut(s) 895
DrdI GACNNNNNNGTC 1 cut(s) 953
DriI GACNNNNNGTC 1 cut(s) 1072
DseDI GACNNNNNNGTC 1 cut(s) 953
EaeI YGGCCR 2 cut(s) 1111, 1581
Eam1104I CTCTTC 1 cut(s) 627
Eam1105I GACNNNNNGTC 1 cut(s) 1072
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 3 cut(s) 552, 1451, 1584
Eco147I AGGCCT 1 cut(s) 774
Eco31I GGTCTC 2 cut(s) 727, 1290
Eco57I CTGAAG 2 cut(s) 86, 1716
Eco81I CCTNAGG 1 cut(s) 796
EcoRII CCWGG 4 cut(s) 981, 1216, 1461, 1574
EcoT14I CCWWGG 3 cut(s) 552, 1451, 1584
EcoT22I ATGCAT 1 cut(s) 535
ErhI CCWWGG 3 cut(s) 552, 1451, 1584
FaqI GGGAC 2 cut(s) 1071, 1110
FblI GTMKAC 1 cut(s) 125
FokI GGATG 5 cut(s) 177, 826, 1483, 1591, 1716
FspBI CTAG 6 cut(s) 198, 204, 297, 657, 1121, 1130
FspI TGCGCA 1 cut(s) 189
GlaI GCGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 1593
HaeIII GGCC 7 cut(s) 16, 774, 1113, 1216, 1330, 1574, 1583
HapII CCGG 2 cut(s) 1029, 1309
HgaI GACGC 1 cut(s) 1073
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HindIII AAGCTT 1 cut(s) 413
HpaII CCGG 2 cut(s) 1029, 1309
HphI GGTGA 4 cut(s) 271, 518, 540, 1247
Hpy188I TCNGA 7 cut(s) 66, 352, 571, 670, 747, 1608, 1649
Hpy188III TCNNGA 6 cut(s) 323, 419, 526, 612, 798, 1637
Hpy99I CGWCG 1 cut(s) 1285
HpyAV CCTTC 5 cut(s) 61, 764, 1130, 1206, 1520
HpyCH4III ACNGT 4 cut(s) 653, 1211, 1285, 1345
HpyF3I CTNAG 5 cut(s) 349, 358, 581, 796, 1071
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 263, 736
LmnI GCTCC 3 cut(s) 22, 543, 920
LweI GCATC 5 cut(s) 199, 316, 367, 597, 698
MaeI CTAG 6 cut(s) 198, 204, 297, 657, 1121, 1130
MaeIII GTNAC 3 cut(s) 1339, 1621, 1658
MalI GATC 2 cut(s) 265, 738
MbiI CCGCTC 1 cut(s) 1546
MboI GATC 2 cut(s) 263, 736
MboII GAAGA 7 cut(s) 191, 552, 614, 695, 1375, 1691, 1721
MflI RGATCY 2 cut(s) 263, 736
MhlI GDGCHC 4 cut(s) 436, 664, 887, 1693
MlsI TGGCCA 1 cut(s) 1583
MluCI AATT 7 cut(s) 422, 498, 726, 803, 896, 1237, 1408
MluNI TGGCCA 1 cut(s) 1583
MlyI GAGTC 7 cut(s) 161, 341, 373, 539, 566, 963, 1082
Mox20I TGGCCA 1 cut(s) 1583
Mph1103I ATGCAT 1 cut(s) 535
MscI TGGCCA 1 cut(s) 1583
MseI TTAA 3 cut(s) 225, 894, 1101
MslI CAYNNNNRTG 2 cut(s) 1346, 1741
Msp20I TGGCCA 1 cut(s) 1583
MspA1I CMGCKG 2 cut(s) 640, 718
MspI CCGG 2 cut(s) 1029, 1309
MspR9I CCNGG 5 cut(s) 983, 1029, 1218, 1463, 1576
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 4 cut(s) 983, 1218, 1463, 1576
NciI CCSGG 1 cut(s) 1029
NcoI CCATGG 1 cut(s) 1584
NdeII GATC 2 cut(s) 263, 736
NheI GCTAGC 1 cut(s) 1129
NlaIV GGNNCC 4 cut(s) 103, 238, 834, 922
NmuCI GTSAC 2 cut(s) 1339, 1658
NsbI TGCGCA 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 2 cut(s) 1264, 1524
OliI CACNNNNGTG 1 cut(s) 1346
PaeI GCATGC 1 cut(s) 1524
PagI TCATGA 1 cut(s) 322
PceI AGGCCT 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 1521
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 5 cut(s) 134, 572, 988, 1430, 1633
PleI GAGTC 7 cut(s) 161, 341, 372, 539, 565, 962, 1081
PpsI GAGTC 7 cut(s) 161, 341, 372, 539, 565, 962, 1081
Psp6I CCWGG 4 cut(s) 981, 1216, 1461, 1574
PspFI CCCAGC 1 cut(s) 1589
PspGI CCWGG 4 cut(s) 981, 1216, 1461, 1574
PspN4I GGNNCC 4 cut(s) 103, 238, 834, 922
PspPI GGNCC 1 cut(s) 1572
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 263, 736
PvuII CAGCTG 2 cut(s) 640, 718
RsaI GTAC 6 cut(s) 41, 301, 628, 995, 1615, 1667
RsaNI GTAC 6 cut(s) 40, 300, 627, 994, 1614, 1666
RseI CAYNNNNRTG 2 cut(s) 1346, 1741
SaqAI TTAA 3 cut(s) 225, 894, 1101
Sau3AI GATC 2 cut(s) 263, 736
Sau96I GGNCC 1 cut(s) 1572
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 7 cut(s) 161, 341, 373, 539, 566, 963, 1082
ScrFI CCNGG 5 cut(s) 983, 1029, 1218, 1463, 1576
SduI GDGCHC 4 cut(s) 436, 664, 887, 1693
SfaNI GCATC 5 cut(s) 199, 316, 367, 597, 698
SfcI CTRYAG 2 cut(s) 811, 1210
SfiI GGCCNNNNNGGCC 1 cut(s) 1580
SmiMI CAYNNNNRTG 2 cut(s) 1346, 1741
SmlI CTYRAG 3 cut(s) 440, 1045, 1324
SmoI CTYRAG 3 cut(s) 440, 1045, 1324
SphI GCATGC 1 cut(s) 1524
Sse9I AATT 7 cut(s) 422, 498, 726, 803, 896, 1237, 1408
SseBI AGGCCT 1 cut(s) 774
SsiI CCGC 1 cut(s) 1546
SspI AATATT 1 cut(s) 679
SspMI CTAG 6 cut(s) 198, 204, 297, 657, 1121, 1130
StuI AGGCCT 1 cut(s) 774
StyD4I CCNGG 5 cut(s) 981, 1027, 1216, 1461, 1574
StyI CCWWGG 3 cut(s) 552, 1451, 1584
TaaI ACNGT 4 cut(s) 653, 1211, 1285, 1345
TaqI TCGA 3 cut(s) 50, 768, 1280
TasI AATT 7 cut(s) 422, 498, 726, 803, 896, 1237, 1408
TatI WGTACW 3 cut(s) 299, 993, 1613
TfiI GAWTC 5 cut(s) 134, 572, 988, 1430, 1633
Tru1I TTAA 3 cut(s) 225, 894, 1101
Tru9I TTAA 3 cut(s) 225, 894, 1101
TscAI CASTG 5 cut(s) 24, 441, 487, 1044, 1493
TseFI GTSAC 2 cut(s) 1339, 1658
Tsp45I GTSAC 2 cut(s) 1339, 1658
TspDTI ATGAA 5 cut(s) 311, 471, 552, 1487, 1685
TspRI CASTG 5 cut(s) 24, 441, 487, 1044, 1493
VneI GTGCAC 2 cut(s) 660, 1689
XapI RAATTY 3 cut(s) 803, 896, 1237
XceI RCATGY 2 cut(s) 1264, 1524
XcmI CCANNNNNNNNNTGG 1 cut(s) 1582
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 6 cut(s) 198, 204, 297, 657, 1121, 1130
ZrmI AGTACT 1 cut(s) 301
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.