Rroxscaffold_7G00191190

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
31731951 .. 31733699
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191190.1

Sequence Viewer

Length: 1749 bp
ATGTCTTTAGTCAGGCCAGTGGAGCTGTCTGCCACGTCGTACAGAAAATCCAAACTCTACTCTCTGAAGGGAAGCAATGACACTAACACCCAAACATTTGGTGCTGATAAGAATAATCCCATGTATACGACTGATTCTTACTCCACCGACAGTTATGAGTTCCAAGACTCCCCAAGTGAAGAAGTTGCGCATCCATCTAGCTCTAGCATTTCTGGAAGTTCGTTTAATGAGCAAGGTCCCTCATTTTATCCACGCAGAGCTGGATCTGTTTCCTCCTTGACCACTCAAAATCCATCTAGTACTTCTTTCATGTCCACGAGGCTTCATGATGCTTACCAAACCAACATTGACTCAGATTACTTAGAGAGTCAAAGCCCGGAGGCTGTTAGCTTTGATGACGGTAAGATGAGATTGAAGCTTCAAGAATTGGAGAGAGTACTGCTTGAGGACAACGATGCTGAAGATGATGAGGAGATGATTGGAAATGGTCAAAGCATGGAAATTGACGGTGAATGGACTGAACCAATCCAGAATGTATTGCTCCATGACTCACCCAAGGAGTCTTCATCATCTGATTCTTATCTAAGCAGCATCAGCAGCAACAAAGAAGTATCACAGGTATCTCCTCGAACACCCAAGCAGCTGCTCTTTGACTGTGCTGGTGCCCTTTCAGAGGGAAATATCGAAGAAGCATCAACCATAATAAATGAGCTTCGGCAGCTGGTCTCAATTCAGGGAGATCCTCCTCAGAGGATTGCAGCATATATGGTGGAAGGCCTTGCAGCTCGCATGGCTTCCTCAGGAAAATATCTCTATAGAGCTTTGAAATGCAAGGAACCTCCATCCTCTTATCGCCTTGCAGCCATGCAAGTACTTTTTGAGGTGTGCCCTTGCTTTAAATTTGGATTCATGGCAGCAAATGGAGCCATTATAGAAGCTACGAAAGATGAAGAGAGAGTCCATATAATAGATTTTGACATAAACCAGGGGAATCAGTACATAACACTCATACAAGCACTTGCTGAACTGCCTGGTAAGCCACCGCACTTGAGGTTAACGGGGGTTGATGACCCTGAGTCAGTTCAGCGTCCTGTTGGGGGCCTTAATACCATCGGGCAAAGGCTAGAGCAGCTAGCAGAAGGACTTGGTGTTTCATTCGAGTTTCAAGCAGTTGCCTCAAAGACTTCAATCGTCAGTCCTTCGATGCTGGACTGTAGGCAAGGGGAAGCACTTGTCATAAATTTTGCTTTTCAGCTTCACCACATGCCCGATGAGAGTGTTTCGACAGTAAACCAGAGAGACCAGCTTCTCCGGCTGGCCAAGAGCTTGAGGCCAAAACTTGTCACAGTTGTGGAACAAGATGTGAACACCAATACTACCCCATTCTTCCCAAGATTTGTTGAAGCCTACAATTATTACTCTGCTGTTTTTGATTCCCTTGAAGCAGCTATACCAAGGGAGAGCCAGGATAGGATGAATGTTGAAAAGCAGTGCCTTGCACGGGACATAGTAAACATCGTTGCATGCGAAGGAGAGGAAAGAATAGAGCGGTATGAGGTTGCAGGGAAGTGGAGAGCCAGGATGGCCATGGCTGGGTTTACTTCAACTCCTATGAGTAAAAGTGTTACTGATTCGATTCGTGACCTTATCAGAATGTATTGTGACAGGTACAAGATAAAGGAAGAAATGGGTGGACTTCATTTTGGATGGGAAGACAAAAGCTTGATTGTTGCTTCAGCATGGAGGTGA

Protein Analysis

582

Amino Acids

64.85

Weight (kDa)

4.85

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 213 - 582 8.3e-140 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 662
AccBSI CCGCTC 1 cut(s) 1549
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 1043, 1549
AclWI GGATC 2 cut(s) 271, 734
AcoI YGGCCR 2 cut(s) 1317, 1584
AcsI RAATTY 2 cut(s) 899, 1240
AcuI CTGAAG 3 cut(s) 86, 480, 1719
AfaI GTAC 6 cut(s) 41, 301, 438, 873, 998, 1670
AfiI CCNNNNNNNGG 4 cut(s) 673, 1097, 1501, 1593
AgsI TTSAA 9 cut(s) 415, 422, 826, 1166, 1188, 1403, 1442, 1484, 1605
AhdI GACNNNNNGTC 1 cut(s) 1075
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 4 cut(s) 984, 1030, 1464, 1577
AleI CACNNNNGTG 1 cut(s) 1349
Alw26I GTCTC 2 cut(s) 730, 1293
AlwI GGATC 2 cut(s) 271, 734
AoxI GGCC 6 cut(s) 14, 775, 1099, 1317, 1331, 1584
ApoI RAATTY 2 cut(s) 899, 1240
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 236, 1099
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 3 cut(s) 521, 543, 1250
AsuNHI GCTAGC 1 cut(s) 1132
AvaII GGWCC 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 799
BaeGI GKGCMC 2 cut(s) 667, 890
BalI TGGCCA 2 cut(s) 1319, 1586
BanI GGYRCC 1 cut(s) 662
BarI GAAGNNNNNNTAC 2 cut(s) 1434, 1466
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 2 cut(s) 555, 1719
BccI CCATC 6 cut(s) 202, 301, 850, 1118, 1576, 1701
BciT130I CCWGG 4 cut(s) 986, 1032, 1466, 1579
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 730, 1293
BfaI CTAG 5 cut(s) 198, 204, 297, 1124, 1133
BfmI CTRYAG 2 cut(s) 814, 1213
BglI GCCNNNNNGGC 1 cut(s) 1583
BmcAI AGTACT 3 cut(s) 301, 438, 873
Bme1390I CCNGG 5 cut(s) 377, 986, 1032, 1466, 1579
Bme18I GGWCC 1 cut(s) 236
BmeRI GACNNNNNGTC 1 cut(s) 1075
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 236, 1099
BmiI GGNNCC 5 cut(s) 238, 664, 837, 925, 1100
BmrFI CCNGG 5 cut(s) 377, 986, 1032, 1466, 1579
BmsI GCATC 6 cut(s) 199, 319, 445, 600, 701, 1194
BmtI GCTAGC 1 cut(s) 1136
BpiI GAAGAC 2 cut(s) 555, 1719
BpuEI CTTGAG 3 cut(s) 464, 1069, 1348
BpuMI CCSGG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 579
BsaI GGTCTC 2 cut(s) 730, 1293
BsaJI CCNNGG 4 cut(s) 555, 985, 1454, 1587
BsaXI ACNNNNNCTCC 2 cut(s) 1591, 1621
Bsc4I CCNNNNNNNGG 4 cut(s) 673, 1097, 1501, 1593
Bse1I ACTGG 1 cut(s) 17
Bse21I CCTNAGG 1 cut(s) 799
Bse3DI GCAATG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 4 cut(s) 986, 1032, 1466, 1579
BseDI CCNNGG 4 cut(s) 555, 985, 1454, 1587
BseGI GGATG 5 cut(s) 190, 842, 1479, 1587, 1712
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 4 cut(s) 673, 1097, 1501, 1593
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 4 cut(s) 366, 761, 813, 1065
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 3 cut(s) 485, 615, 735
BseSI GKGCMC 2 cut(s) 667, 890
BseYI CCCAGC 1 cut(s) 1592
BshFI GGCC 6 cut(s) 16, 777, 1101, 1319, 1333, 1586
BshNI GGYRCC 1 cut(s) 662
BsiSI CCGG 2 cut(s) 377, 1312
BslFI GGGAC 2 cut(s) 222, 1517
BslI CCNNNNNNNGG 4 cut(s) 673, 1097, 1501, 1593
BsmAI GTCTC 2 cut(s) 730, 1293
BsmFI GGGAC 2 cut(s) 222, 1517
BsnI GGCC 6 cut(s) 16, 777, 1101, 1319, 1333, 1586
Bso31I GGTCTC 2 cut(s) 730, 1293
Bsp1286I GDGCHC 2 cut(s) 667, 890
Bsp143I GATC 2 cut(s) 263, 739
Bsp19I CCATGG 1 cut(s) 1587
BspACI CCGC 2 cut(s) 1043, 1549
BspANI GGCC 6 cut(s) 16, 777, 1101, 1319, 1333, 1586
BspCNI CTCAG 4 cut(s) 365, 760, 812, 1066
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 5 cut(s) 238, 664, 837, 925, 1100
BspOI GCTAGC 1 cut(s) 1136
BspPI GGATC 2 cut(s) 271, 734
BspT107I GGYRCC 1 cut(s) 662
BspTNI GGTCTC 2 cut(s) 730, 1293
BsrBI CCGCTC 1 cut(s) 1549
BsrDI GCAATG 1 cut(s) 82
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 4 cut(s) 555, 985, 1454, 1587
BssMI GATC 2 cut(s) 263, 739
BssNAI GTATAC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 3 cut(s) 555, 1454, 1587
Bst1107I GTATAC 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 4 cut(s) 986, 1032, 1466, 1579
Bst4CI ACNGT 7 cut(s) 152, 401, 509, 656, 1214, 1288, 1348
Bst6I CTCTTC 1 cut(s) 945
BstC8I GCNNGC 4 cut(s) 787, 1134, 1317, 1525
BstDEI CTNAG 6 cut(s) 352, 361, 584, 747, 799, 1074
BstDSI CCRYGG 1 cut(s) 1587
BstENI CCTNNNNNAGG 1 cut(s) 671
BstF5I GGATG 5 cut(s) 190, 842, 1479, 1587, 1712
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 266, 742
BstMAI GTCTC 2 cut(s) 730, 1293
BstMBI GATC 2 cut(s) 263, 739
BstNI CCWGG 4 cut(s) 986, 1032, 1466, 1579
BstNSI RCATGY 2 cut(s) 1267, 1527
BstSCI CCNGG 5 cut(s) 375, 984, 1030, 1464, 1577
BstSFI CTRYAG 2 cut(s) 814, 1213
BstSLI GKGCMC 2 cut(s) 667, 890
BstV2I GAAGAC 2 cut(s) 555, 1719
BstX2I RGATCY 2 cut(s) 263, 739
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 2 cut(s) 263, 739
BstZ17I GTATAC 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 799
BsuRI GGCC 6 cut(s) 16, 777, 1101, 1319, 1333, 1586
BtgI CCRYGG 1 cut(s) 1587
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 5 cut(s) 190, 842, 1479, 1587, 1712
BtsI GCAGTG 1 cut(s) 1496
BtsIMutI CAGTG 2 cut(s) 24, 1496
Cac8I GCNNGC 4 cut(s) 787, 1134, 1317, 1525
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 236, 1099
CseI GACGC 1 cut(s) 1076
Csp6I GTAC 6 cut(s) 40, 300, 437, 872, 997, 1669
CspCI CAANNNNNGTGG 2 cut(s) 1029, 1064
CviQI GTAC 6 cut(s) 40, 300, 437, 872, 997, 1669
DdeI CTNAG 6 cut(s) 352, 361, 584, 747, 799, 1074
DpnI GATC 2 cut(s) 265, 741
DpnII GATC 2 cut(s) 263, 739
DraI TTTAAA 1 cut(s) 898
DriI GACNNNNNGTC 1 cut(s) 1075
EaeI YGGCCR 2 cut(s) 1317, 1584
Eam1104I CTCTTC 1 cut(s) 945
Eam1105I GACNNNNNGTC 1 cut(s) 1075
EarI CTCTTC 1 cut(s) 945
Eco130I CCWWGG 3 cut(s) 555, 1454, 1587
Eco147I AGGCCT 1 cut(s) 777
Eco31I GGTCTC 2 cut(s) 730, 1293
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 3 cut(s) 86, 480, 1719
Eco81I CCTNAGG 1 cut(s) 799
EcoNI CCTNNNNNAGG 1 cut(s) 671
EcoO109I RGGNCCY 2 cut(s) 236, 1099
EcoRII CCWGG 4 cut(s) 984, 1030, 1464, 1577
EcoT14I CCWWGG 3 cut(s) 555, 1454, 1587
ErhI CCWWGG 3 cut(s) 555, 1454, 1587
FaqI GGGAC 2 cut(s) 222, 1517
FblI GTMKAC 1 cut(s) 125
FokI GGATG 5 cut(s) 177, 829, 1486, 1594, 1719
FspBI CTAG 5 cut(s) 198, 204, 297, 1124, 1133
FspI TGCGCA 1 cut(s) 189
GlaI GCGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 1596
HaeIII GGCC 6 cut(s) 16, 777, 1101, 1319, 1333, 1586
HapII CCGG 2 cut(s) 377, 1312
HgaI GACGC 1 cut(s) 1076
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 1056
HindII GTYRAC 1 cut(s) 1056
HindIII AAGCTT 2 cut(s) 416, 1720
HpaI GTTAAC 1 cut(s) 1056
HpaII CCGG 2 cut(s) 377, 1312
HphI GGTGA 3 cut(s) 521, 543, 1250
Hpy166II GTNNAC 8 cut(s) 126, 315, 1056, 1291, 1366, 1513, 1599, 1694
Hpy188I TCNGA 6 cut(s) 66, 355, 574, 673, 750, 1652
Hpy188III TCNNGA 6 cut(s) 213, 326, 422, 529, 801, 1640
Hpy8I GTNNAC 8 cut(s) 126, 315, 1056, 1291, 1366, 1513, 1599, 1694
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 5 cut(s) 61, 767, 1133, 1209, 1523
HpyCH4III ACNGT 7 cut(s) 152, 401, 509, 656, 1214, 1288, 1348
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 8 cut(s) 758, 782, 831, 860, 868, 1499, 1523, 1562
HpyF3I CTNAG 6 cut(s) 352, 361, 584, 747, 799, 1074
HpySE526I ACGT 1 cut(s) 35
HspAI GCGC 1 cut(s) 188
KspAI GTTAAC 1 cut(s) 1056
Kzo9I GATC 2 cut(s) 263, 739
LmnI GCTCC 3 cut(s) 22, 546, 923
LweI GCATC 6 cut(s) 199, 319, 445, 600, 701, 1194
MaeI CTAG 5 cut(s) 198, 204, 297, 1124, 1133
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 1342, 1624, 1640, 1661
MalI GATC 2 cut(s) 265, 741
MbiI CCGCTC 1 cut(s) 1549
MboI GATC 2 cut(s) 263, 739
MboII GAAGA 8 cut(s) 191, 473, 555, 698, 962, 1378, 1694, 1724
MflI RGATCY 2 cut(s) 263, 739
MhlI GDGCHC 2 cut(s) 667, 890
MlsI TGGCCA 2 cut(s) 1319, 1586
MluCI AATT 6 cut(s) 425, 501, 729, 899, 1240, 1411
MluNI TGGCCA 2 cut(s) 1319, 1586
MlyI GAGTC 7 cut(s) 161, 344, 376, 542, 569, 966, 1085
Mox20I TGGCCA 2 cut(s) 1319, 1586
MscI TGGCCA 2 cut(s) 1319, 1586
MseI TTAA 4 cut(s) 225, 897, 1055, 1104
MslI CAYNNNNRTG 2 cut(s) 1349, 1744
Msp20I TGGCCA 2 cut(s) 1319, 1586
MspA1I CMGCKG 2 cut(s) 643, 721
MspI CCGG 2 cut(s) 377, 1312
MspR9I CCNGG 5 cut(s) 377, 986, 1032, 1466, 1579
MvaI CCWGG 4 cut(s) 986, 1032, 1466, 1579
NciI CCSGG 1 cut(s) 377
NcoI CCATGG 1 cut(s) 1587
NdeII GATC 2 cut(s) 263, 739
NheI GCTAGC 1 cut(s) 1132
NlaIV GGNNCC 5 cut(s) 238, 664, 837, 925, 1100
NmuCI GTSAC 3 cut(s) 1342, 1640, 1661
NsbI TGCGCA 1 cut(s) 189
NspI RCATGY 2 cut(s) 1267, 1527
OliI CACNNNNGTG 1 cut(s) 1349
PaeI GCATGC 1 cut(s) 1527
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 1524
PfeI GAWTC 7 cut(s) 134, 575, 906, 991, 1433, 1631, 1636
PleI GAGTC 7 cut(s) 161, 344, 375, 542, 568, 965, 1084
PpsI GAGTC 7 cut(s) 161, 344, 375, 542, 568, 965, 1084
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 4 cut(s) 984, 1030, 1464, 1577
PspFI CCCAGC 1 cut(s) 1592
PspGI CCWGG 4 cut(s) 984, 1030, 1464, 1577
PspN4I GGNNCC 5 cut(s) 238, 664, 837, 925, 1100
PspPI GGNCC 2 cut(s) 236, 1099
PspPPI RGGWCCY 1 cut(s) 236
PsuI RGATCY 2 cut(s) 263, 739
PvuII CAGCTG 2 cut(s) 643, 721
RsaI GTAC 6 cut(s) 41, 301, 438, 873, 998, 1670
RsaNI GTAC 6 cut(s) 40, 300, 437, 872, 997, 1669
RseI CAYNNNNRTG 2 cut(s) 1349, 1744
SaqAI TTAA 4 cut(s) 225, 897, 1055, 1104
Sau3AI GATC 2 cut(s) 263, 739
Sau96I GGNCC 2 cut(s) 236, 1099
ScaI AGTACT 3 cut(s) 301, 438, 873
SchI GAGTC 7 cut(s) 161, 344, 376, 542, 569, 966, 1085
ScrFI CCNGG 5 cut(s) 377, 986, 1032, 1466, 1579
SduI GDGCHC 2 cut(s) 667, 890
SfaNI GCATC 6 cut(s) 199, 319, 445, 600, 701, 1194
SfcI CTRYAG 2 cut(s) 814, 1213
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 1349, 1744
SmlI CTYRAG 3 cut(s) 443, 1048, 1327
SmoI CTYRAG 3 cut(s) 443, 1048, 1327
SphI GCATGC 1 cut(s) 1527
Sse9I AATT 6 cut(s) 425, 501, 729, 899, 1240, 1411
SseBI AGGCCT 1 cut(s) 777
SsiI CCGC 2 cut(s) 1043, 1549
SspMI CTAG 5 cut(s) 198, 204, 297, 1124, 1133
StuI AGGCCT 1 cut(s) 777
StyD4I CCNGG 5 cut(s) 375, 984, 1030, 1464, 1577
StyI CCWWGG 3 cut(s) 555, 1454, 1587
TaaI ACNGT 7 cut(s) 152, 401, 509, 656, 1214, 1288, 1348
TaiI ACGT 1 cut(s) 38
TaqI TCGA 6 cut(s) 628, 684, 1158, 1202, 1283, 1634
TasI AATT 6 cut(s) 425, 501, 729, 899, 1240, 1411
TatI WGTACW 4 cut(s) 299, 436, 871, 996
TfiI GAWTC 7 cut(s) 134, 575, 906, 991, 1433, 1631, 1636
Tru1I TTAA 4 cut(s) 225, 897, 1055, 1104
Tru9I TTAA 4 cut(s) 225, 897, 1055, 1104
TscAI CASTG 2 cut(s) 24, 1496
TseFI GTSAC 3 cut(s) 1342, 1640, 1661
Tsp45I GTSAC 3 cut(s) 1342, 1640, 1661
TspDTI ATGAA 8 cut(s) 298, 314, 555, 898, 963, 1143, 1490, 1688
TspRI CASTG 2 cut(s) 24, 1496
VpaK11BI GGWCC 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 671
XapI RAATTY 2 cut(s) 899, 1240
XceI RCATGY 2 cut(s) 1267, 1527
XcmI CCANNNNNNNNNTGG 1 cut(s) 1585
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 5 cut(s) 198, 204, 297, 1124, 1133
ZrmI AGTACT 3 cut(s) 301, 438, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.