Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007910

Physical Location & Seq

Genomic Coordinates Reverse (-)

14889214 .. 14890035

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0110000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGATGTGCATAGTAAGAGTATGGTTGGTCTTAAATCCGTTAGTGCAGCAACATCCAGTAGCTGCTTTCATTCATCAAGTGACTTTTGTGGTTTTGAATGCACCATTTGCTATAAGGACTCGCCTAAAGTCCCAGTTGTGACACCTTGTGGACACCTTTACTGTTGGAGTTGTCTACATAGATGGCTTTCGCTTTGTTTATCTCGTTCAATAAAGCGTCATTGCCCAGTATGTAGTGCTACTATAGAGCACAAGAAATTGATCTATGTCAAGGGAGGATGGAGTCCATTTTACTGCGGCCGTAGATCCCCATTCGAATGCAACATTTGCCTAGAATTAGCTCAAGCTGAGCCAATTATAACACTATGTGGCCACCTTTACTGTAGACCTTGTCTCGACAAAAGGCTTCATGTTCACTCAAATTCCAAGAACTCTAAGGACTCCAATAGATCAGGTAGCTGCTCGGTTTGTAATTCCCATATAGTGGAGAAGAAATCAATCCCTCTTTACGGACAAGGGATCAGATTATCACAGAAGGATGATTCGGAACCAAGTTCTCAGTCTCTACGACCTATTCAGATTCCAAATAGGCCAGAAGCTGGTCATGAAGGACCAAAGTCCTCTGCGATTGCTTGGAGCACTCTCACCGGGAACCTTTCGTCTTGGGTGTTCGGATACAAAAGAACTCTTATCGTAATGGTAACATTTGTTGGGACATTAATAGTGGCATTGATCTATGTCCCTGCAGGCAATGCTCCAACTATTTCCAATAGCTTTGCTGCCATTGCCTTTTCTGATCAGAATAGTGATAGTCCGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

273

Amino Acids

29.9

Weight (kDa)

8.85

Isoelectric Point (pI)

66.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	33 - 78	4.5e-07	Ring finger domain
zf-C3HC4_3	PF13920	33 - 84	4.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	34 - 71	1.2e-06	RING-type zinc-finger
zf-C3HC4	PF00097	34 - 78	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	106 - 158	3e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	107 - 144	7.5e-08	RING-type zinc-finger
zf-C3HC4	PF00097	107 - 157	1.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21450
fragaria_vesca	FvH4_2g15030 FvH4_2g15030 FvH4_2g15030
malus_domestica	MD05G1011200.v1.1 MD10G1011000.v1.1
prunus_persica	Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1
pyrus_communis	pycom05g00650
rosa_chinensis	RchiOBHm_Chr6g0277581
rosa_laevigata	RLG00000013290
rosa_multiflora	Rmu_sc0001846.1_g000027
rosa_roxburghii	Rroxscaffold_7G00191190
rosa_rugosa	Rorug06G0109800 Rorug06G0109900 Rorug06G0110000 Rorug06G0110100
rosa_samantha	Rh6AG220300 Rh6BG224200 Rh6CG226500 Rh6DG217100
rosa_wichuraiana	Rw6G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AccB7I	CCANNNNNTGG	2 cut(s)	484, 599
AccI	GTMKAC	2 cut(s)	175, 385
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	300, 527
AcoI	YGGCCR	2 cut(s)	298, 370
AcsI	RAATTY	1 cut(s)	421
AdeI	CACNNNGTG	2 cut(s)	149, 368
AfiI	CCNNNNNNNGG	3 cut(s)	484, 509, 599
AgsI	TTSAA	2 cut(s)	98, 210
AluBI	AGCT	6 cut(s)	63, 341, 347, 459, 599, 774
AluI	AGCT	6 cut(s)	63, 341, 347, 459, 599, 774
Alw21I	GWGCWC	2 cut(s)	252, 641
Alw26I	GTCTC	2 cut(s)	398, 567
AlwI	GGATC	2 cut(s)	300, 527
AlwNI	CAGNNNCTG	2 cut(s)	63, 599
AoxI	GGCC	3 cut(s)	298, 370, 590
ApeKI	GCWGC	4 cut(s)	47, 63, 459, 779
ApoI	RAATTY	1 cut(s)	421
AseI	ATTAAT	1 cut(s)	719
AspS9I	GGNCC	1 cut(s)	611
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	1 cut(s)	637
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	611
BalI	TGGCCA	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	252, 641
BbvI	GCAGC	4 cut(s)	50, 59, 446, 766
BccI	CCATC	2 cut(s)	177, 273
BceAI	ACGGC	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	668
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	398, 567
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	3 cut(s)	243, 382, 744
BfuI	GTATCC	1 cut(s)	668
BisI	GCNGC	5 cut(s)	48, 64, 298, 460, 780
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	5 cut(s)	49, 65, 299, 461, 781
Bme1390I	CCNGG	1 cut(s)	649
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	2 cut(s)	549, 653
BmrFI	CCNGG	1 cut(s)	649
BmrI	ACTGGG	2 cut(s)	128, 221
BmuI	ACTGGG	2 cut(s)	128, 221
BoxI	GACNNNNGTC	1 cut(s)	616
Bpu1102I	GCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 509, 599
Bse1I	ACTGG	3 cut(s)	57, 134, 227
Bse3DI	GCAATG	3 cut(s)	220, 757, 783
BseGI	GGATG	4 cut(s)	10, 53, 284, 544
BseLI	CCNNNNNNNGG	3 cut(s)	484, 509, 599
BseMI	GCAATG	3 cut(s)	220, 757, 783
BseMII	CTCAG	2 cut(s)	339, 572
BseNI	ACTGG	3 cut(s)	57, 134, 227
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	4 cut(s)	50, 59, 446, 766
BsgI	GTGCAG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	3 cut(s)	300, 372, 592
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	252, 641
BsiSI	CCGG	1 cut(s)	648
BslFI	GGGAC	3 cut(s)	116, 725, 727
BslI	CCNNNNNNNGG	3 cut(s)	484, 509, 599
BsmAI	GTCTC	2 cut(s)	398, 567
BsmFI	GGGAC	3 cut(s)	116, 725, 727
BsmI	GAATGC	2 cut(s)	104, 323
BsnI	GGCC	3 cut(s)	300, 372, 592
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	252, 641
Bsp143I	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	3 cut(s)	300, 372, 592
BspCNI	CTCAG	2 cut(s)	340, 571
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	549, 653
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	2 cut(s)	300, 527
BspT104I	TTCGAA	1 cut(s)	315
BsrDI	GCAATG	3 cut(s)	220, 757, 783
BsrI	ACTGG	3 cut(s)	57, 134, 227
BssMI	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
Bst4CI	ACNGT	2 cut(s)	164, 383
BstAPI	GCANNNNNTGC	3 cut(s)	108, 327, 752
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	3 cut(s)	348, 435, 558
BstF5I	GGATG	4 cut(s)	10, 53, 284, 544
BstKTI	GATC	6 cut(s)	264, 308, 452, 522, 735, 799
BstMAI	GTCTC	2 cut(s)	398, 567
BstMBI	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 327, 752, 785
BstPAI	GACNNNNGTC	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	647
BstSFI	CTRYAG	3 cut(s)	243, 382, 744
BstV1I	GCAGC	4 cut(s)	50, 59, 446, 766
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BstZI	CGGCCG	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	668
BsuRI	GGCC	3 cut(s)	300, 372, 592
BtsCI	GGATG	4 cut(s)	10, 53, 284, 544
Cac8I	GCNNGC	1 cut(s)	748
CaiI	CAGNNNCTG	2 cut(s)	63, 599
CciI	TCATGA	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	611
CseI	GACGC	1 cut(s)	206
CviAII	CATG	2 cut(s)	410, 605
DdeI	CTNAG	3 cut(s)	348, 435, 558
DpnI	GATC	6 cut(s)	263, 307, 451, 521, 734, 798
DpnII	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
DraIII	CACNNNGTG	2 cut(s)	149, 368
EaeI	YGGCCR	2 cut(s)	298, 370
EagI	CGGCCG	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	611
Eco52I	CGGCCG	1 cut(s)	298
FaeI	CATG	2 cut(s)	413, 608
FaqI	GGGAC	3 cut(s)	116, 725, 727
FatI	CATG	2 cut(s)	409, 604
FbaI	TGATCA	1 cut(s)	796
FblI	GTMKAC	2 cut(s)	175, 385
Fnu4HI	GCNGC	5 cut(s)	48, 64, 298, 460, 780
FokI	GGATG	4 cut(s)	17, 40, 291, 551
Fsp4HI	GCNGC	5 cut(s)	48, 64, 298, 460, 780
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	5 cut(s)	48, 64, 298, 460, 780
HaeIII	GGCC	3 cut(s)	300, 372, 592
HapII	CCGG	1 cut(s)	648
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	413, 608
HinfI	GANTC	5 cut(s)	119, 283, 440, 542, 580
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	4 cut(s)	152, 176, 386, 415
Hpy188I	TCNGA	7 cut(s)	524, 547, 579, 674, 796, 801, 816
Hpy188III	TCNNGA	2 cut(s)	395, 605
Hpy8I	GTNNAC	4 cut(s)	152, 176, 386, 415
HpyAV	CCTTC	2 cut(s)	529, 602
HpyCH4III	ACNGT	2 cut(s)	164, 383
HpyCH4V	TGCA	5 cut(s)	10, 47, 102, 321, 746
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 327, 752, 785
HpyF3I	CTNAG	3 cut(s)	348, 435, 558
Hsp92II	CATG	2 cut(s)	413, 608
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
LmnI	GCTCC	2 cut(s)	636, 760
LpnPI	CCDG	9 cut(s)	70, 147, 240, 438, 585, 606, 661, 732, 756
Lsp1109I	GCAGC	4 cut(s)	50, 59, 446, 766
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	3 cut(s)	80, 139, 700
MalI	GATC	6 cut(s)	263, 307, 451, 521, 734, 798
MboI	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
MboII	GAAGA	1 cut(s)	502
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	2 cut(s)	252, 641
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	5 cut(s)	257, 335, 354, 421, 472
MluNI	TGGCCA	1 cut(s)	372
MlyI	GAGTC	3 cut(s)	113, 292, 434
MmeI	TCCRAC	2 cut(s)	146, 782
MnlI	CCTC	3 cut(s)	269, 513, 631
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	3 cut(s)	33, 719, 820
MslI	CAYNNNNRTG	1 cut(s)	316
Msp20I	TGGCCA	1 cut(s)	372
MspI	CCGG	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	649
Mva1269I	GAATGC	2 cut(s)	104, 323
MwoI	GCNNNNNNNGC	4 cut(s)	108, 327, 752, 785
NciI	CCSGG	1 cut(s)	649
NdeII	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
NlaIII	CATG	2 cut(s)	413, 608
NlaIV	GGNNCC	2 cut(s)	549, 653
NmuCI	GTSAC	2 cut(s)	80, 139
NspV	TTCGAA	1 cut(s)	315
PagI	TCATGA	1 cut(s)	604
PctI	GAATGC	2 cut(s)	104, 323
PfeI	GAWTC	2 cut(s)	542, 580
PflFI	GACNNNGTC	1 cut(s)	390
PflMI	CCANNNNNTGG	2 cut(s)	484, 599
PkrI	GCNGC	5 cut(s)	49, 65, 299, 461, 781
PleI	GAGTC	3 cut(s)	113, 291, 434
PpsI	GAGTC	3 cut(s)	113, 291, 434
PshAI	GACNNNNGTC	1 cut(s)	616
PshBI	ATTAAT	1 cut(s)	719
PsiI	TTATAA	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	549, 653
PspPI	GGNCC	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	2 cut(s)	63, 599
PsuI	RGATCY	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	33, 719, 820
SatI	GCNGC	5 cut(s)	48, 64, 298, 460, 780
Sau3AI	GATC	6 cut(s)	261, 305, 449, 519, 732, 796
Sau96I	GGNCC	1 cut(s)	611
SbfI	CCTGCAGG	1 cut(s)	748
SchI	GAGTC	3 cut(s)	113, 292, 434
ScrFI	CCNGG	1 cut(s)	649
SdaI	CCTGCAGG	1 cut(s)	748
SduI	GDGCHC	2 cut(s)	252, 641
SfcI	CTRYAG	3 cut(s)	243, 382, 744
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse8387I	CCTGCAGG	1 cut(s)	748
Sse9I	AATT	5 cut(s)	257, 335, 354, 421, 472
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	164, 383
TaqI	TCGA	2 cut(s)	315, 396
TasI	AATT	5 cut(s)	257, 335, 354, 421, 472
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	542, 580
Tru1I	TTAA	3 cut(s)	33, 719, 820
Tru9I	TTAA	3 cut(s)	33, 719, 820
TseFI	GTSAC	2 cut(s)	80, 139
TseI	GCWGC	4 cut(s)	47, 63, 459, 779
Tsp45I	GTSAC	2 cut(s)	80, 139
TspDTI	ATGAA	4 cut(s)	59, 63, 398, 621
TspGWI	ACGGA	2 cut(s)	28, 525
Tth111I	GACNNNGTC	1 cut(s)	390
Van91I	CCANNNNNTGG	2 cut(s)	484, 599
VpaK11BI	GGWCC	1 cut(s)	611
VspI	ATTAAT	1 cut(s)	719
XapI	RAATTY	1 cut(s)	421
XmiI	GTMKAC	2 cut(s)	175, 385
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.