AT1G21790

TLC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016678
Physical Location & Seq
Forward (+)
7654088 .. 7655981
1894 bp
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UTR
Exon/CDS
Intron
AT1G21790.1

Sequence Viewer

Length: 867 bp
ATGGCGAGGAACGGGATTGGGAGTTCAGGAGGGAAGAAGAATGGGGCTGGGCAGTTTTTCTTAGCGACGCTGCTTCTTTGGCTTGTCTCCGTCGTGTTTGAGATTGCTTTCAATCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGATGCTTCTTTCAATTGATGAATTGGGTTGTTCGTTCATGGATTTCTCGTGACCCTATATTTGTTAATACCTCTGTCTCGCTTTTGCACTCAATCATCACCTCCGCATCAGTGGTTTTCATACTTCTCAATCAATGCTTAGCCAAAGGTTTAGACGAGATGTTTGATCATTCTGAGTTGGTTGGTGGGACTTGGAAATGGGCATATCCAGCTTTGTGTTTCTCATGCGGCTACTTTGCATATGACCAGTGGGATATGCTTCAGTACCGGTTATACAGCGGCTTAATACCTTCTATTCTTGTTCACCATCTAGTCCTCCTTGTTTGCTTCACATTGGCACTATACCGAAATGTAACCATCAACTACCTTATTCTTACTCTCATCTGTGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGAGAATGGCAGGAATCCGAGACAGCAACACAGCATTGGTGAAACTGGAGTGGGTATTAAACTGGACAGCCTTTGTGTTTGCGAGATGCATTCCTCACATTCTCATCACTATCAAGCTGATCAAAGACGCACACAAGTTTGGGAAAGGCGTGGAGTTACCACTCGCTCTGTCTGGTATGGCAGGAATGAACATTCTTAATGTTGGCCTCGGGTTGGATCTGTTTCATGCTTTCAGAAGAGAGAGAAGCCACAGAAGAAACCAAGAGAACGGCAACCTTCACGACCATGGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

288

Amino Acids

32.73

Weight (kDa)

9.06

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 70 - 258 2.4e-21 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21790
fragaria_vesca FvH4_2g26990
malus_domestica MD08G1162300.v1.1 MD15G1347700.v1.1
prunus_persica Prupe.1G495500_v2.0.a1
pyrus_communis pycom15g31170
rosa_chinensis RchiOBHm_Chr6g0295871
rosa_laevigata RLG00000011761
rosa_multiflora Rmu_ssc0000277.1_g000001
rosa_roxburghii Rroxscaffold_7G00172100
rosa_rugosa Rorug06G0254900
rosa_samantha Rh6BG376200 Rh6CG382300
rosa_wichuraiana Rw6G032120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 4 cut(s) 144, 252, 375, 426
AclWI GGATC 1 cut(s) 795
AcuI CTGAAG 1 cut(s) 392
AcvI CACGTG 1 cut(s) 559
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 556
AgeI ACCGGT 1 cut(s) 414
AgsI TTSAA 2 cut(s) 112, 161
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AluBI AGCT 4 cut(s) 127, 359, 568, 688
AluI AGCT 4 cut(s) 127, 359, 568, 688
Alw26I GTCTC 3 cut(s) 91, 229, 585
AlwI GGATC 1 cut(s) 795
Ama87I CYCGRG 1 cut(s) 779
Aor13HI TCCGGA 1 cut(s) 117
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 1 cut(s) 70
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 293, 325
AsiGI ACCGGT 1 cut(s) 414
AsuHPI GGTGA 4 cut(s) 148, 238, 443, 622
AvaI CYCGRG 1 cut(s) 779
BauI CACGAG 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 559
BbvI GCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 462, 512
BceAI ACGGC 1 cut(s) 856
BclI TGATCA 2 cut(s) 313, 690
BcoDI GTCTC 3 cut(s) 91, 229, 585
BfaI CTAG 1 cut(s) 458
BisI GCNGC 3 cut(s) 71, 376, 427
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 3 cut(s) 72, 377, 428
BmeT110I CYCGRG 1 cut(s) 779
BmsI GCATC 4 cut(s) 140, 263, 528, 647
BpmI CTGGAG 1 cut(s) 638
Bpu10I CCTNAGC 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 559
BsaJI CCNNGG 2 cut(s) 778, 856
BsaWI WCCGGW 2 cut(s) 117, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse118I RCCGGY 1 cut(s) 414
Bse1I ACTGG 3 cut(s) 394, 621, 638
BseAI TCCGGA 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 778, 856
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 394, 621, 638
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 1 cut(s) 777
BshTI ACCGGT 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 2 cut(s) 118, 415
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 3 cut(s) 91, 229, 585
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 2 cut(s) 541, 660
BsnI GGCC 1 cut(s) 777
BsoBI CYCGRG 1 cut(s) 779
Bsp13I TCCGGA 1 cut(s) 117
Bsp143I GATC 4 cut(s) 313, 546, 690, 787
Bsp1720I GCTNAGC 1 cut(s) 286
Bsp19I CCATGG 1 cut(s) 856
BspACI CCGC 4 cut(s) 144, 252, 375, 426
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 117
BspPI GGATC 1 cut(s) 795
BsrFI RCCGGY 1 cut(s) 414
BsrI ACTGG 3 cut(s) 394, 621, 638
BssAI RCCGGY 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 778, 856
BssMI GATC 4 cut(s) 313, 546, 690, 787
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 856
Bst2BI CACGAG 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 802
BstBAI YACGTR 1 cut(s) 559
BstDEI CTNAG 4 cut(s) 61, 286, 321, 569
BstDSI CCRYGG 1 cut(s) 856
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 4 cut(s) 316, 549, 693, 790
BstMAI GTCTC 3 cut(s) 91, 229, 585
BstMBI GATC 4 cut(s) 313, 546, 690, 787
BstMWI GCNNNNNNNGC 3 cut(s) 79, 150, 356
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
BsuRI GGCC 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 856
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 264, 401
Cfr10I RCCGGY 1 cut(s) 414
CseI GACGC 2 cut(s) 76, 707
Csp6I GTAC 1 cut(s) 412
CspAI ACCGGT 1 cut(s) 414
CviAII CATG 4 cut(s) 186, 372, 797, 857
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 4 cut(s) 61, 286, 321, 569
DpnI GATC 4 cut(s) 315, 548, 692, 789
DpnII GATC 4 cut(s) 313, 546, 690, 787
Eam1104I CTCTTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 392
Eco72I CACGTG 1 cut(s) 559
Eco88I CYCGRG 1 cut(s) 779
EcoT14I CCWWGG 1 cut(s) 856
EcoT22I ATGCAT 2 cut(s) 543, 662
ErhI CCWWGG 1 cut(s) 856
FaeI CATG 4 cut(s) 189, 375, 800, 860
FaqI GGGAC 1 cut(s) 349
FatI CATG 4 cut(s) 185, 371, 796, 856
FauNDI CATATG 1 cut(s) 388
FbaI TGATCA 2 cut(s) 313, 690
Fnu4HI GCNGC 3 cut(s) 71, 376, 427
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 71, 376, 427
FspBI CTAG 1 cut(s) 458
GluI GCNGC 3 cut(s) 71, 376, 427
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 638
HaeIII GGCC 1 cut(s) 777
HapII CCGG 2 cut(s) 118, 415
HgaI GACGC 2 cut(s) 76, 707
Hin1II CATG 4 cut(s) 189, 375, 800, 860
HinfI GANTC 1 cut(s) 585
HpaII CCGG 2 cut(s) 118, 415
HphI GGTGA 4 cut(s) 148, 238, 443, 622
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 322, 590, 806
Hpy188III TCNNGA 4 cut(s) 27, 118, 197, 851
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 2 cut(s) 70, 95
HpyAV CCTTC 2 cut(s) 447, 857
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 4 cut(s) 235, 386, 541, 660
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 150, 356
HpyF3I CTNAG 4 cut(s) 61, 286, 321, 569
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 4 cut(s) 189, 375, 800, 860
Kpn2I TCCGGA 1 cut(s) 117
Ksp22I TGATCA 2 cut(s) 313, 690
Kzo9I GATC 4 cut(s) 313, 546, 690, 787
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 4 cut(s) 140, 263, 528, 647
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 3 cut(s) 197, 499, 726
MalI GATC 4 cut(s) 315, 548, 692, 789
MboI GATC 4 cut(s) 313, 546, 690, 787
MboII GAAGA 4 cut(s) 46, 49, 819, 837
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 787
MluCI AATT 2 cut(s) 161, 169
MmeI TCCRAC 1 cut(s) 765
MnlI CCTC 7 cut(s) 23, 229, 259, 473, 555, 675, 788
Mph1103I ATGCAT 2 cut(s) 543, 662
MroI TCCGGA 1 cut(s) 117
MseI TTAA 4 cut(s) 213, 431, 629, 768
MslI CAYNNNNRTG 1 cut(s) 855
MspA1I CMGCKG 1 cut(s) 426
MspI CCGG 2 cut(s) 118, 415
MunI CAATTG 1 cut(s) 161
Mva1269I GAATGC 2 cut(s) 541, 660
MwoI GCNNNNNNNGC 3 cut(s) 79, 150, 356
NcoI CCATGG 1 cut(s) 856
NdeI CATATG 1 cut(s) 388
NdeII GATC 4 cut(s) 313, 546, 690, 787
NlaIII CATG 4 cut(s) 189, 375, 800, 860
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 2 cut(s) 543, 662
PctI GAATGC 2 cut(s) 541, 660
PfeI GAWTC 1 cut(s) 585
PinAI ACCGGT 1 cut(s) 414
PkrI GCNGC 3 cut(s) 72, 377, 428
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
Ppu21I YACGTR 1 cut(s) 559
PspCI CACGTG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 787
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 855
SaqAI TTAA 4 cut(s) 213, 431, 629, 768
SatI GCNGC 3 cut(s) 71, 376, 427
Sau3AI GATC 4 cut(s) 313, 546, 690, 787
SfaNI GCATC 4 cut(s) 140, 263, 528, 647
SmiMI CAYNNNNRTG 1 cut(s) 855
Sse9I AATT 2 cut(s) 161, 169
SsiI CCGC 4 cut(s) 144, 252, 375, 426
SspMI CTAG 1 cut(s) 458
StyI CCWWGG 1 cut(s) 856
TaiI ACGT 1 cut(s) 561
TaqI TCGA 1 cut(s) 545
TasI AATT 2 cut(s) 161, 169
TauI GCSGC 2 cut(s) 378, 429
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 4 cut(s) 213, 431, 629, 768
Tru9I TTAA 4 cut(s) 213, 431, 629, 768
TscAI CASTG 2 cut(s) 264, 401
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 5 cut(s) 174, 182, 256, 773, 785
TspGWI ACGGA 2 cut(s) 79, 137
TspRI CASTG 2 cut(s) 264, 401
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 2 cut(s) 543, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.