Prupe.1G495500_v2.0.a1

TLC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016678
Physical Location & Seq
Forward (+)
41122009 .. 41124334
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G495500.1

Sequence Viewer

Length: 837 bp
ATGAGTAGAACGAGAGCTCAAAAGGAGGACAAGGCAGGGCCTTTCTTCTTAGCCACACTTGTGCTCTGGTTCGTCTCCGTTTTGTTCGAAATTCTGTTCCACAGGCGCTCACAGCTGCTCTCCATAGTCGCTGGCTGTTTCTTTTACCAATTGGCCAACTGGGTTGTTCGCGCTTTCGTCTCCCGCGACCCTCTCTTTGTCAACACCTCTGTTTCTCTACTCCACTCCACCCTAACCTCCTCTTCAGTGATATTTATTTTGGCTAATCAGTGGTTAAAAAATGGTTCGATTGGCATGTTTGAGCACTCTCAGTTGTTTGGAGGTACTTGGCCATGGGCATACCCAGCTTTGTGTTTTTCGTGCGGTTACTTTGCATATGATCAGTGGGATATGCTGCATTATGGATTATATAGTGGTTGGATCCCTTCCATCCTGATGCATCATCTGATACTCCTCATTTGCTTTACTCTTGCTTTGTATCGGAATGTGACCATCAATTACCTTATTCTCACTCTCATTTGTGAGCTGCATTCTATCTTTCTGCATGTGAGGAAAGTGCGGCGGATGGCAGGTGTTCGCGATGCCAAGAGCAAAATTGTAATGGCAGAATGGGTTCTTAATCTGGTCACCTACATTGTAGCAAGGGCTGGAGCTCACCTTCTCATCACCGCCAAGCTCATCTGGGATGCTCCCAAATTCGGAAAGGGCATTGAGCTGCCACTTGCATTGTTTGGGATGTTCGGAATGAACTTTCTGAATGCCTTTCTTGGCATCGATCTCTTCCGTGCATTCAAGAGAGAGAGGAATCCTCAGAATACTAATAGTCATCATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

279

Amino Acids

31.93

Weight (kDa)

9.56

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21790
fragaria_vesca FvH4_2g26990
malus_domestica MD08G1162300.v1.1 MD15G1347700.v1.1
prunus_persica Prupe.1G495500_v2.0.a1
pyrus_communis pycom15g31170
rosa_chinensis RchiOBHm_Chr6g0295871
rosa_laevigata RLG00000011761
rosa_multiflora Rmu_ssc0000277.1_g000001
rosa_roxburghii Rroxscaffold_7G00172100
rosa_rugosa Rorug06G0254900
rosa_samantha Rh6BG376200 Rh6CG382300
rosa_wichuraiana Rw6G032120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AccII CGCG 3 cut(s) 171, 186, 579
AciI CCGC 5 cut(s) 184, 363, 559, 562, 669
AclWI GGATC 2 cut(s) 415, 428
AcoI YGGCCR 2 cut(s) 153, 329
AcsI RAATTY 2 cut(s) 90, 695
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 1 cut(s) 793
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 7 cut(s) 17, 115, 347, 526, 653, 676, 715
AluI AGCT 7 cut(s) 17, 115, 347, 526, 653, 676, 715
Alw21I GWGCWC 4 cut(s) 19, 66, 306, 655
Alw26I GTCTC 2 cut(s) 79, 184
AlwI GGATC 2 cut(s) 415, 428
AoxI GGCC 3 cut(s) 38, 153, 329
ApeKI GCWGC 4 cut(s) 115, 394, 526, 715
ApoI RAATTY 2 cut(s) 90, 695
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 2 cut(s) 108, 173
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 3 cut(s) 619, 647, 658
AsuII TTCGAA 1 cut(s) 87
BalI TGGCCA 2 cut(s) 155, 331
BamHI GGATCC 1 cut(s) 420
BanII GRGCYC 2 cut(s) 19, 655
Bbv12I GWGCWC 4 cut(s) 19, 66, 306, 655
BbvI GCAGC 4 cut(s) 102, 381, 513, 702
BccI CCATC 3 cut(s) 437, 500, 559
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 79, 184
BfoI RGCGCY 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 560
BisI GCNGC 5 cut(s) 116, 395, 527, 560, 716
BlsI GCNGC 5 cut(s) 117, 396, 528, 561, 717
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 5 cut(s) 426, 448, 571, 676, 780
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 793, 825
BpmI CTGGAG 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 4 cut(s) 429, 570, 691, 741
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 323, 824
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 229, 443
BseXI GCAGC 4 cut(s) 102, 381, 513, 702
BseYI CCCAGC 1 cut(s) 343
Bsh1236I CGCG 3 cut(s) 171, 186, 579
BshFI GGCC 3 cut(s) 40, 155, 331
BshVI ATCGAT 1 cut(s) 774
BsiHKAI GWGCWC 4 cut(s) 19, 66, 306, 655
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 2 cut(s) 79, 184
BsmBI CGTCTC 2 cut(s) 79, 184
BsmI GAATGC 3 cut(s) 529, 763, 788
BsnI GGCC 3 cut(s) 40, 155, 331
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 4 cut(s) 19, 66, 306, 655
Bsp143I GATC 3 cut(s) 379, 420, 775
Bsp19I CCATGG 1 cut(s) 332
Bsp68I TCGCGA 1 cut(s) 579
BspACI CCGC 5 cut(s) 184, 363, 559, 562, 669
BspANI GGCC 3 cut(s) 40, 155, 331
BspCNI CTCAG 2 cut(s) 322, 823
BspDI ATCGAT 1 cut(s) 774
BspFNI CGCG 3 cut(s) 171, 186, 579
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 2 cut(s) 415, 428
BspT104I TTCGAA 1 cut(s) 87
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 3 cut(s) 379, 420, 775
BssT1I CCWWGG 1 cut(s) 332
Bst6I CTCTTC 2 cut(s) 247, 785
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 49, 309, 810
BstDSI CCRYGG 1 cut(s) 332
BstEII GGTNACC 1 cut(s) 625
BstF5I GGATG 4 cut(s) 429, 570, 691, 741
BstFNI CGCG 3 cut(s) 171, 186, 579
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 2 cut(s) 108, 173
BstKTI GATC 3 cut(s) 382, 423, 778
BstMAI GTCTC 2 cut(s) 79, 184
BstMBI GATC 3 cut(s) 379, 420, 775
BstMWI GCNNNNNNNGC 2 cut(s) 112, 344
BstNSI RCATGY 2 cut(s) 298, 548
BstPI GGTNACC 1 cut(s) 625
BstUI CGCG 3 cut(s) 171, 186, 579
BstV1I GCAGC 4 cut(s) 102, 381, 513, 702
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 774
BsuRI GGCC 3 cut(s) 40, 155, 331
BsuTUI ATCGAT 1 cut(s) 774
BtgI CCRYGG 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 4 cut(s) 429, 570, 691, 741
BtsIMutI CAGTG 3 cut(s) 252, 275, 389
BtuMI TCGCGA 1 cut(s) 579
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 133
CciI TCATGA 1 cut(s) 829
CfoI GCGC 2 cut(s) 108, 173
Cfr13I GGNCC 1 cut(s) 38
ClaI ATCGAT 1 cut(s) 774
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 4 cut(s) 295, 333, 545, 830
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 49, 309, 810
DpnI GATC 3 cut(s) 381, 422, 777
DpnII GATC 3 cut(s) 379, 420, 775
EaeI YGGCCR 2 cut(s) 153, 329
Eam1104I CTCTTC 2 cut(s) 247, 785
EarI CTCTTC 2 cut(s) 247, 785
EciI GGCGGA 1 cut(s) 577
Ecl136II GAGCTC 2 cut(s) 17, 653
Eco130I CCWWGG 1 cut(s) 332
Eco24I GRGCYC 2 cut(s) 19, 655
Eco53kI GAGCTC 2 cut(s) 17, 653
Eco57I CTGAAG 1 cut(s) 228
Eco91I GGTNACC 1 cut(s) 625
EcoICRI GAGCTC 2 cut(s) 17, 653
EcoO109I RGGNCCY 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 441
EcoT38I GRGCYC 2 cut(s) 19, 655
ErhI CCWWGG 1 cut(s) 332
Esp3I CGTCTC 2 cut(s) 79, 184
FaeI CATG 4 cut(s) 298, 336, 548, 833
FatI CATG 4 cut(s) 294, 332, 544, 829
FauI CCCGC 1 cut(s) 191
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 5 cut(s) 116, 395, 527, 560, 716
FokI GGATG 4 cut(s) 416, 577, 698, 748
FriOI GRGCYC 2 cut(s) 19, 655
Fsp4HI GCNGC 5 cut(s) 116, 395, 527, 560, 716
GlaI GCGC 2 cut(s) 107, 172
GluI GCNGC 5 cut(s) 116, 395, 527, 560, 716
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 669
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 3 cut(s) 40, 155, 331
HhaI GCGC 2 cut(s) 108, 173
Hin1II CATG 4 cut(s) 298, 336, 548, 833
Hin6I GCGC 2 cut(s) 106, 171
HinP1I GCGC 2 cut(s) 106, 171
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 805
HphI GGTGA 3 cut(s) 619, 647, 658
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 6 cut(s) 447, 483, 701, 743, 756, 813
Hpy188III TCNNGA 4 cut(s) 433, 578, 793, 830
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 435, 668
HpyCH4V TGCA 7 cut(s) 374, 397, 439, 529, 544, 725, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 344
HpyF3I CTNAG 3 cut(s) 49, 309, 810
Hsp92II CATG 4 cut(s) 298, 336, 548, 833
HspAI GCGC 2 cut(s) 106, 171
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 3 cut(s) 379, 420, 775
LmnI GCTCC 2 cut(s) 650, 694
Lsp1109I GCAGC 4 cut(s) 102, 381, 513, 702
LweI GCATC 5 cut(s) 426, 448, 571, 676, 780
MaeIII GTNAC 3 cut(s) 365, 487, 625
MalI GATC 3 cut(s) 381, 422, 777
MboI GATC 3 cut(s) 379, 420, 775
MboII GAAGA 3 cut(s) 37, 234, 772
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 4 cut(s) 19, 66, 306, 655
MlsI TGGCCA 2 cut(s) 155, 331
MluCI AATT 5 cut(s) 90, 149, 496, 594, 695
MluNI TGGCCA 2 cut(s) 155, 331
MmeI TCCRAC 1 cut(s) 398
Mox20I TGGCCA 2 cut(s) 155, 331
Mph1103I ATGCAT 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 2 cut(s) 155, 331
MseI TTAA 2 cut(s) 275, 618
MslI CAYNNNNRTG 2 cut(s) 59, 434
Msp20I TGGCCA 2 cut(s) 155, 331
MspA1I CMGCKG 1 cut(s) 115
MunI CAATTG 1 cut(s) 149
Mva1269I GAATGC 3 cut(s) 529, 763, 788
MvnI CGCG 3 cut(s) 171, 186, 579
MwoI GCNNNNNNNGC 2 cut(s) 112, 344
NcoI CCATGG 1 cut(s) 332
NdeI CATATG 1 cut(s) 376
NdeII GATC 3 cut(s) 379, 420, 775
NlaIII CATG 4 cut(s) 298, 336, 548, 833
NlaIV GGNNCC 1 cut(s) 422
NmuCI GTSAC 2 cut(s) 487, 625
NruI TCGCGA 1 cut(s) 579
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 2 cut(s) 298, 548
NspV TTCGAA 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 59
PagI TCATGA 1 cut(s) 829
PaqCI CACCTGC 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 3 cut(s) 529, 763, 788
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 805
PkrI GCNGC 5 cut(s) 117, 396, 528, 561, 717
Psp124BI GAGCTC 2 cut(s) 19, 655
PspEI GGTNACC 1 cut(s) 625
PspFI CCCAGC 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 115
RruI TCGCGA 1 cut(s) 579
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 2 cut(s) 59, 434
SacI GAGCTC 2 cut(s) 19, 655
SaqAI TTAA 2 cut(s) 275, 618
SatI GCNGC 5 cut(s) 116, 395, 527, 560, 716
Sau3AI GATC 3 cut(s) 379, 420, 775
Sau96I GGNCC 1 cut(s) 38
SduI GDGCHC 4 cut(s) 19, 66, 306, 655
SfaNI GCATC 5 cut(s) 426, 448, 571, 676, 780
SfuI TTCGAA 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 59, 434
Sse9I AATT 5 cut(s) 90, 149, 496, 594, 695
SsiI CCGC 5 cut(s) 184, 363, 559, 562, 669
SstI GAGCTC 2 cut(s) 19, 655
StyI CCWWGG 1 cut(s) 332
TaqI TCGA 3 cut(s) 87, 287, 774
TasI AATT 5 cut(s) 90, 149, 496, 594, 695
TauI GCSGC 1 cut(s) 562
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 2 cut(s) 275, 618
Tru9I TTAA 2 cut(s) 275, 618
TscAI CASTG 3 cut(s) 252, 275, 389
TseFI GTSAC 2 cut(s) 487, 625
TseI GCWGC 4 cut(s) 115, 394, 526, 715
Tsp45I GTSAC 2 cut(s) 487, 625
TspDTI ATGAA 1 cut(s) 761
TspGWI ACGGA 2 cut(s) 67, 773
TspRI CASTG 3 cut(s) 252, 275, 389
XapI RAATTY 2 cut(s) 90, 695
XceI RCATGY 2 cut(s) 298, 548
XmnI GAANNNNTTC 1 cut(s) 612
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.