FvH4_2g26990

TLC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016678
Physical Location & Seq
Reverse (-)
21561030 .. 21563582
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26990.t1

Sequence Viewer

Length: 837 bp
ATGGGGAGGACTCGACCTGTAACACAGGATAAGGCAGGGGCTTTCTTCTTGGCAACTCTGCTGCTGTGGTTCGTCTCTGTTTGGTTTGAGATTCTGTTCAACCGGAAAACCGAGCTGGTTTATATTATTGCCGGGTCTGGCTTTTACCAATTGGCTAACTGTGTCTGTCGCCGCTTCGTTTCCCGTGACCCTCTGTTTGTTAATACTACGGTTTCTCTTCTTCATTCGTCCATTACATCTGCTTCAGTTGTGTTCATATTGGTTAATCAATGGTTACAAAATGGCTCGAGTGAGATGTTTGAGCACTCACAGTTGTTTGGAGGTACTTGGGCATGGGCACACCAAGCTTTGTGCTTCTCGTGCGGTTACTTTGCATACGATCAGTGGGATATGCTGCATTACGGATTATATAGTGGTCTTATTCCTTCCATACTAGCACATCATCTGCTGCTCCTCATTTGCTTCACTCTTGCTTTGTATCGGAATGTTACCATTAATTACCTTATTCTCACTCTCATCTGTGAGCTGCACTCTATCTTTCTGCATGTGAGGAAAATCCGGAGAATGGCAGGTGTTCGTGACGCCAAGAGCAACATTGTCAAGGCAGAGTGGGTTTTGAATTGGGTGACGTTCACATTCGCAAGGGTTGCATCTCACATTCTCATCACCGCCAAGCTCATCTTAGATGCTCATAAATTTGGAAGGGGAGTGGAACTGCCACTTGCGCTATTGGGAATGTTTGGAATGAACATGCTGAATACTTTTCTTGGCATTGATCTCTTCCATGCTTGCAAGAGAGAGATAAATCCACGGCATACCAATACTCGTCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

279

Amino Acids

31.84

Weight (kDa)

9.26

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 66 - 257 4e-21 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21790
fragaria_vesca FvH4_2g26990
malus_domestica MD08G1162300.v1.1 MD15G1347700.v1.1
prunus_persica Prupe.1G495500_v2.0.a1
pyrus_communis pycom15g31170
rosa_chinensis RchiOBHm_Chr6g0295871
rosa_laevigata RLG00000011761
rosa_multiflora Rmu_ssc0000277.1_g000001
rosa_roxburghii Rroxscaffold_7G00172100
rosa_rugosa Rorug06G0254900
rosa_samantha Rh6BG376200 Rh6CG382300
rosa_wichuraiana Rw6G032120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AccIII TCCGGA 1 cut(s) 558
AciI CCGC 3 cut(s) 172, 363, 669
AcsI RAATTY 1 cut(s) 695
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 565
AgsI TTSAA 2 cut(s) 100, 619
AluBI AGCT 4 cut(s) 115, 347, 526, 676
AluI AGCT 4 cut(s) 115, 347, 526, 676
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 558
ApeKI GCWGC 4 cut(s) 61, 394, 448, 526
ApoI RAATTY 1 cut(s) 695
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 1 cut(s) 727
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 637, 658
AvaI CYCGRG 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 340
BauI CACGAG 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 48, 381, 435, 513
BceAI ACGGC 1 cut(s) 827
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 560
BisI GCNGC 5 cut(s) 62, 172, 395, 449, 527
BlsI GCNGC 5 cut(s) 63, 173, 396, 450, 528
Bme1390I CCNGG 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 659, 676
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpuMI CCSGG 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 1 cut(s) 809
BsaWI WCCGGW 2 cut(s) 102, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 565
BseAI TCCGGA 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 809
BseLI CCNNNNNNNGG 1 cut(s) 565
BseRI GAGGAG 1 cut(s) 443
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 4 cut(s) 48, 381, 435, 513
BsgI GTGCAG 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 3 cut(s) 103, 132, 559
BslI CCNNNNNNNGG 1 cut(s) 565
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 306, 340
Bsp13I TCCGGA 1 cut(s) 558
Bsp143I GATC 2 cut(s) 379, 775
BspACI CCGC 3 cut(s) 172, 363, 669
BspEI TCCGGA 1 cut(s) 558
BspMI ACCTGC 1 cut(s) 560
BssECI CCNNGG 1 cut(s) 809
BssMI GATC 2 cut(s) 379, 775
BssNI GRCGYC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 161, 211, 312
Bst6I CTCTTC 2 cut(s) 222, 785
BstACI GRCGYC 1 cut(s) 582
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 1 cut(s) 682
BstDSI CCRYGG 1 cut(s) 809
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 2 cut(s) 382, 778
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 379, 775
BstMWI GCNNNNNNNGC 4 cut(s) 344, 360, 647, 724
BstNSI RCATGY 2 cut(s) 548, 754
BstSCI CCNGG 1 cut(s) 131
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 48, 381, 435, 513
BtgI CCRYGG 1 cut(s) 809
BtsIMutI CAGTG 1 cut(s) 389
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 790
CfoI GCGC 1 cut(s) 727
CseI GACGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 324
CviAII CATG 4 cut(s) 333, 545, 751, 785
CviJI RGCY 8 cut(s) 41, 115, 141, 155, 285, 347, 526, 676
CviKI_1 RGCY 8 cut(s) 41, 115, 141, 155, 285, 347, 526, 676
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 682
DpnI GATC 2 cut(s) 381, 777
DpnII GATC 2 cut(s) 379, 775
Eam1104I CTCTTC 2 cut(s) 222, 785
EarI CTCTTC 2 cut(s) 222, 785
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 286
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 4 cut(s) 336, 548, 754, 788
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 4 cut(s) 332, 544, 750, 784
Fnu4HI GCNGC 5 cut(s) 62, 172, 395, 449, 527
Fsp4HI GCNGC 5 cut(s) 62, 172, 395, 449, 527
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 726
GluI GCNGC 5 cut(s) 62, 172, 395, 449, 527
HapII CCGG 3 cut(s) 103, 132, 559
HgaI GACGC 1 cut(s) 590
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 4 cut(s) 336, 548, 754, 788
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 2 cut(s) 10, 91
HpaII CCGG 3 cut(s) 103, 132, 559
HphI GGTGA 2 cut(s) 637, 658
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 3 cut(s) 559, 578, 830
Hpy8I GTNNAC 1 cut(s) 633
HpyAV CCTTC 2 cut(s) 435, 696
HpyCH4III ACNGT 3 cut(s) 161, 211, 312
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 6 cut(s) 374, 397, 529, 544, 650, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 360, 647, 724
HpyF3I CTNAG 1 cut(s) 682
HpySE526I ACGT 1 cut(s) 629
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 4 cut(s) 336, 548, 754, 788
HspAI GCGC 1 cut(s) 725
Kpn2I TCCGGA 1 cut(s) 558
Kzo9I GATC 2 cut(s) 379, 775
LmnI GCTCC 1 cut(s) 456
LpnPI CCDG 9 cut(s) 11, 21, 30, 101, 116, 123, 145, 555, 572
Lsp1109I GCAGC 4 cut(s) 48, 381, 435, 513
LweI GCATC 2 cut(s) 659, 676
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 7 cut(s) 19, 185, 273, 365, 487, 578, 625
MalI GATC 2 cut(s) 381, 777
MboI GATC 2 cut(s) 379, 775
MboII GAAGA 4 cut(s) 37, 209, 212, 772
MfeI CAATTG 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 306, 340
MluCI AATT 4 cut(s) 149, 496, 619, 695
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 4 cut(s) 201, 314, 464, 543
MroI TCCGGA 1 cut(s) 558
MseI TTAA 3 cut(s) 201, 264, 495
MspI CCGG 3 cut(s) 103, 132, 559
MspR9I CCNGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 344, 360, 647, 724
NciI CCSGG 1 cut(s) 133
NdeII GATC 2 cut(s) 379, 775
NlaIII CATG 4 cut(s) 336, 548, 754, 788
NmuCI GTSAC 3 cut(s) 185, 578, 625
NspI RCATGY 2 cut(s) 548, 754
PaeR7I CTCGAG 1 cut(s) 286
PaqCI CACCTGC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 5 cut(s) 63, 173, 396, 450, 528
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PshBI ATTAAT 1 cut(s) 495
PspXI VCTCGAGB 1 cut(s) 286
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 201, 264, 495
SatI GCNGC 5 cut(s) 62, 172, 395, 449, 527
Sau3AI GATC 2 cut(s) 379, 775
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 306, 340
SetI ASST 9 cut(s) 19, 117, 325, 349, 504, 528, 574, 632, 678
SfaNI GCATC 2 cut(s) 659, 676
Sfr274I CTCGAG 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 4 cut(s) 149, 496, 619, 695
SsiI CCGC 3 cut(s) 172, 363, 669
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 3 cut(s) 161, 211, 312
TaiI ACGT 1 cut(s) 632
TaqI TCGA 2 cut(s) 13, 287
TasI AATT 4 cut(s) 149, 496, 619, 695
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 3 cut(s) 201, 264, 495
Tru9I TTAA 3 cut(s) 201, 264, 495
TscAI CASTG 1 cut(s) 389
TseFI GTSAC 3 cut(s) 185, 578, 625
TseI GCWGC 4 cut(s) 61, 394, 448, 526
Tsp45I GTSAC 3 cut(s) 185, 578, 625
TspDTI ATGAA 3 cut(s) 212, 244, 761
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 389
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 1 cut(s) 695
XceI RCATGY 2 cut(s) 548, 754
XhoI CTCGAG 1 cut(s) 286
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.