Rmu_ssc0000277.1_g000001

TLC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000277.1
OG0016678
Physical Location & Seq
Reverse (-)
1 .. 2621
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000277.1_g000001.1.cds

Sequence Viewer

Length: 737 bp
atggggaggacacggcctccgacgcaggaaaagtcaggggctttcttcttggcgactctgctgctctggttcgtctctgtttggtttgagattctgttcaaccggcggacggagctgggttatattatcgccggctgtggcttttaccaattggctaactgggtctgtcgccgctttgtatcccgtgaccctctctttgttaacacctccgtctctctcctccactcctctattacctccgcttctgttgtatttattttggttaatcactggttacaaaatggttcgagtgggatgtttgagcactcacagttggttggaggtacttgggcgtgggcacaccaggctttgtgcttctcgtgcggttactttgcatacgatcagtgggatatgctgcattacggattatatagtggttttatcccttccatcctagcgcatcatctgctgctcctcatgtgcttcactcttgctttgtatcggaatgtgaccattaattaccttattctcactctcatttgtgagctgcactctatctttctgcatgtgaggaaaattcggcgaatggcaggtgttcgtgacgctaagagcaacattgtcaaggcagaatgggttttgaattgggtgactttcactttggcaagggctgcatctcacattctcatcaccgccaagctcatcttagatgctcataaatttggaaggggagtggaactgcctattgcgctgttgggaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

245

Amino Acids

27.9

Weight (kDa)

9.38

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21790
fragaria_vesca FvH4_2g26990
malus_domestica MD08G1162300.v1.1 MD15G1347700.v1.1
prunus_persica Prupe.1G495500_v2.0.a1
pyrus_communis pycom15g31170
rosa_chinensis RchiOBHm_Chr6g0295871
rosa_laevigata RLG00000011761
rosa_multiflora Rmu_ssc0000277.1_g000001
rosa_roxburghii Rroxscaffold_7G00172100
rosa_rugosa Rorug06G0254900
rosa_samantha Rh6BG376200 Rh6CG382300
rosa_wichuraiana Rw6G032120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AciI CCGC 5 cut(s) 106, 172, 240, 363, 669
AcsI RAATTY 2 cut(s) 555, 695
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 100, 619
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 3 cut(s) 115, 526, 676
AluI AGCT 3 cut(s) 115, 526, 676
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 79, 217
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 5 cut(s) 61, 394, 448, 526, 647
ApoI RAATTY 2 cut(s) 555, 695
ArsI GACNNNNNNTTYG 4 cut(s) 179, 211, 619, 651
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 2 cut(s) 439, 727
AsuHPI GGTGA 2 cut(s) 637, 658
BaeGI GKGCMC 1 cut(s) 340
BauI CACGAG 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 5 cut(s) 48, 381, 435, 513, 634
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 344
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 79, 217
BfaI CTAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
BlsI GCNGC 6 cut(s) 63, 173, 396, 450, 528, 649
Bme1390I CCNGG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 3 cut(s) 448, 659, 676
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 2 cut(s) 102, 131
Bse1I ACTGG 2 cut(s) 164, 275
BseBI CCWGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 300, 429
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 164, 275
BseRI GAGGAG 3 cut(s) 209, 217, 443
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 5 cut(s) 48, 381, 435, 513, 634
BseYI CCCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 512
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 103, 132
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 79, 217
BsmBI CGTCTC 2 cut(s) 79, 217
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 306, 340
Bsp143I GATC 1 cut(s) 379
BspACI CCGC 5 cut(s) 106, 172, 240, 363, 669
BspANI GGCC 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 560
BsrFI RCCGGY 2 cut(s) 102, 131
BsrI ACTGG 2 cut(s) 164, 275
BssAI RCCGGY 2 cut(s) 102, 131
BssMI GATC 1 cut(s) 379
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 312
BstAPI GCANNNNNTGC 2 cut(s) 445, 647
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 585, 682
BstF5I GGATG 2 cut(s) 300, 429
BstHHI GCGC 2 cut(s) 439, 727
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 79, 217
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 5 cut(s) 48, 381, 435, 513, 634
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 300, 429
BtsIMutI CAGTG 2 cut(s) 268, 389
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 2 cut(s) 439, 727
Cfr10I RCCGGY 2 cut(s) 102, 131
CseI GACGC 2 cut(s) 31, 590
Csp6I GTAC 1 cut(s) 324
CviAII CATG 2 cut(s) 457, 545
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 585, 682
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EciI GGCGGA 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 342
Esp3I CGTCTC 2 cut(s) 79, 217
FaeI CATG 2 cut(s) 460, 548
FaiI YATR 8 cut(s) 123, 376, 392, 409, 411, 458, 546, 693
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 2 cut(s) 456, 544
Fnu4HI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
FokI GGATG 2 cut(s) 307, 416
Fsp4HI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 438, 726
GluI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
GsaI CCCAGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 103, 132
HgaI GACGC 2 cut(s) 31, 590
HhaI GCGC 2 cut(s) 439, 727
Hin1II CATG 2 cut(s) 460, 548
Hin6I GCGC 2 cut(s) 437, 725
HinP1I GCGC 2 cut(s) 437, 725
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 2 cut(s) 55, 91
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 2 cut(s) 103, 132
HphI GGTGA 2 cut(s) 637, 658
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 21, 483
Hpy188III TCNNGA 1 cut(s) 578
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 435, 696
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 5 cut(s) 374, 397, 529, 544, 650
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
HpyF3I CTNAG 2 cut(s) 585, 682
Hsp92II CATG 2 cut(s) 460, 548
HspAI GCGC 2 cut(s) 437, 725
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 2 cut(s) 112, 456
Lsp1109I GCAGC 5 cut(s) 48, 381, 435, 513, 634
LweI GCATC 3 cut(s) 448, 659, 676
MaeI CTAG 1 cut(s) 434
MaeIII GTNAC 6 cut(s) 185, 273, 365, 487, 578, 625
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 1 cut(s) 37
MfeI CAATTG 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 306, 340
MluCI AATT 5 cut(s) 149, 496, 555, 619, 695
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 44, 298
MnlI CCTC 9 cut(s) 27, 201, 217, 230, 238, 247, 314, 464, 543
MroNI GCCGGC 1 cut(s) 131
MseI TTAA 3 cut(s) 201, 264, 495
MspI CCGG 2 cut(s) 103, 132
MspR9I CCNGG 1 cut(s) 344
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
NaeI GCCGGC 1 cut(s) 133
NdeII GATC 1 cut(s) 379
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 2 cut(s) 460, 548
NmuCI GTSAC 4 cut(s) 185, 487, 578, 625
NspI RCATGY 1 cut(s) 548
PaqCI CACCTGC 1 cut(s) 560
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 6 cut(s) 63, 173, 396, 450, 528, 649
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 1 cut(s) 342
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 201, 264, 495
SatI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
Sau3AI GATC 1 cut(s) 379
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 2 cut(s) 306, 340
SetI ASST 8 cut(s) 117, 209, 239, 325, 504, 528, 574, 678
SfaNI GCATC 3 cut(s) 448, 659, 676
Sse9I AATT 5 cut(s) 149, 496, 555, 619, 695
SsiI CCGC 5 cut(s) 106, 172, 240, 363, 669
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 287
TasI AATT 5 cut(s) 149, 496, 555, 619, 695
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 3 cut(s) 201, 264, 495
Tru9I TTAA 3 cut(s) 201, 264, 495
TscAI CASTG 2 cut(s) 275, 389
TseFI GTSAC 4 cut(s) 185, 487, 578, 625
TseI GCWGC 5 cut(s) 61, 394, 448, 526, 647
Tsp45I GTSAC 4 cut(s) 185, 487, 578, 625
TspGWI ACGGA 3 cut(s) 125, 199, 417
TspRI CASTG 2 cut(s) 275, 389
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 2 cut(s) 555, 695
XceI RCATGY 1 cut(s) 548
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.