Rroxscaffold_7G00172100

TLC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016678
Physical Location & Seq
Forward (+)
12380405 .. 12382974
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172100.1

Sequence Viewer

Length: 837 bp
ATGGGGAGGACACGGCCTCCGACGCAGGAAAAGTCAGGGGCTTTCTTCTTGGCGACTCTGCTGCTCTGGTTCGTCTCTGTTTGGTTTGAGATTCTGTTCAACCGGCGAACGGAGCTGGGTTATATTATCGCTGGGTGTGGCTTTTACCAATTGGCTAACTGGGTCTGTCGCCGCTTTGTATCCCGTGACCCTCTCTTTGTTAACACCTCCGTCTCTCTCCTCCACTCCTCTATTACCTCCGCTTCTGTTGTATTTATTTTGGTTAATCACTGGTTACAAAATGGTTCGAGTGGGATGTTTGAGCACTCACAGTTGGTTGGAGGTACTTGGGCCTGGGCACACCAGGCTTTGTGCTTCTCGTGCGGTTACTTTGCATACGATCAGTGGGATATGCTGCATTACGGATTATATAGTGGTTTTATCCCTTCCATCCTAGCGCATCATCTGCTGCTCCTCATGTGCTTCACTCTTGCTTTGTATCGGAATGTGACCATTAACTACCTTATTCTCACTCTCATTTGTGAGCTGCACTCTATCTTTCTGCATGTGAGGAAAATTCGCCGAATGGCAGGTGTTCGTGACGCTAAGAGCAACATTGTCAAGGCAGAATGGGTTTTGAATTGGGTGACTTTCACTTTAGCAAGGGCTGCATCTCACATTCTCATCACCGCGAAGCTCATCTTAGATGCTCATAAATTTGGAAGGGGAGTGGAACTGCCTATTGCGCTATTGGGAATGTTTGGAATGAACATGCTGAATACTTTTCTCGGCATTGATCTCTTCCATGCTTGCAAGAGAGAGATGAATCCTCAGCATACTAATACTCATCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

278

Amino Acids

31.79

Weight (kDa)

9.16

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 66 - 258 1.8e-19 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21790
fragaria_vesca FvH4_2g26990
malus_domestica MD08G1162300.v1.1 MD15G1347700.v1.1
prunus_persica Prupe.1G495500_v2.0.a1
pyrus_communis pycom15g31170
rosa_chinensis RchiOBHm_Chr6g0295871
rosa_laevigata RLG00000011761
rosa_multiflora Rmu_ssc0000277.1_g000001
rosa_roxburghii Rroxscaffold_7G00172100
rosa_rugosa Rorug06G0254900
rosa_samantha Rh6BG376200 Rh6CG382300
rosa_wichuraiana Rw6G032120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AccII CGCG 1 cut(s) 671
AciI CCGC 4 cut(s) 172, 240, 363, 669
AcsI RAATTY 2 cut(s) 555, 695
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 100, 619
AjnI CCWGG 2 cut(s) 332, 342
AluBI AGCT 3 cut(s) 115, 526, 676
AluI AGCT 3 cut(s) 115, 526, 676
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 79, 217
AoxI GGCC 2 cut(s) 14, 330
ApeKI GCWGC 5 cut(s) 61, 394, 448, 526, 647
ApoI RAATTY 2 cut(s) 555, 695
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 2 cut(s) 439, 727
AspS9I GGNCC 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 637, 658
BaeGI GKGCMC 1 cut(s) 340
BauI CACGAG 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 5 cut(s) 48, 381, 435, 513, 634
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 2 cut(s) 334, 344
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 79, 217
BfaI CTAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
BlsI GCNGC 6 cut(s) 63, 173, 396, 450, 528, 649
Bme1390I CCNGG 2 cut(s) 334, 344
BmgT120I GGNCC 1 cut(s) 330
BmrFI CCNGG 2 cut(s) 334, 344
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 3 cut(s) 448, 659, 676
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 515, 547
Bpu10I CCTNAGC 1 cut(s) 810
BsaJI CCNNGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 164, 275
BseBI CCWGG 2 cut(s) 334, 344
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 300, 429
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 2 cut(s) 164, 275
BseRI GAGGAG 3 cut(s) 209, 217, 443
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 5 cut(s) 48, 381, 435, 513, 634
BseYI CCCAGC 2 cut(s) 115, 131
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 671
BshFI GGCC 2 cut(s) 16, 332
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 79, 217
BsmBI CGTCTC 2 cut(s) 79, 217
BsnI GGCC 2 cut(s) 16, 332
Bsp1286I GDGCHC 2 cut(s) 306, 340
Bsp143I GATC 2 cut(s) 379, 775
BspACI CCGC 4 cut(s) 172, 240, 363, 669
BspANI GGCC 2 cut(s) 16, 332
BspCNI CTCAG 1 cut(s) 823
BspFNI CGCG 1 cut(s) 671
BspMI ACCTGC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 2 cut(s) 164, 275
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 379, 775
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 334, 344
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 785
BstAPI GCANNNNNTGC 2 cut(s) 445, 647
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 3 cut(s) 585, 682, 810
BstF5I GGATG 2 cut(s) 300, 429
BstFNI CGCG 1 cut(s) 671
BstHHI GCGC 2 cut(s) 439, 727
BstKTI GATC 2 cut(s) 382, 778
BstMAI GTCTC 2 cut(s) 79, 217
BstMBI GATC 2 cut(s) 379, 775
BstMWI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
BstNI CCWGG 2 cut(s) 334, 344
BstNSI RCATGY 2 cut(s) 548, 754
BstSCI CCNGG 2 cut(s) 332, 342
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 1 cut(s) 671
BstV1I GCAGC 5 cut(s) 48, 381, 435, 513, 634
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 16, 332
BtsCI GGATG 2 cut(s) 300, 429
BtsIMutI CAGTG 2 cut(s) 268, 389
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 790
CfoI GCGC 2 cut(s) 439, 727
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 330
CseI GACGC 2 cut(s) 31, 590
Csp6I GTAC 1 cut(s) 324
CviAII CATG 4 cut(s) 457, 545, 751, 785
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 585, 682, 810
DpnI GATC 2 cut(s) 381, 777
DpnII GATC 2 cut(s) 379, 775
Eam1104I CTCTTC 1 cut(s) 785
EarI CTCTTC 1 cut(s) 785
EcoRII CCWGG 2 cut(s) 332, 342
Esp3I CGTCTC 2 cut(s) 79, 217
FaeI CATG 4 cut(s) 460, 548, 754, 788
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 4 cut(s) 456, 544, 750, 784
Fnu4HI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
FokI GGATG 2 cut(s) 307, 416
Fsp4HI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 438, 726
GluI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
GsaI CCCAGC 2 cut(s) 119, 135
HaeIII GGCC 2 cut(s) 16, 332
HapII CCGG 1 cut(s) 103
HgaI GACGC 2 cut(s) 31, 590
HhaI GCGC 2 cut(s) 439, 727
Hin1II CATG 4 cut(s) 460, 548, 754, 788
Hin6I GCGC 2 cut(s) 437, 725
HinP1I GCGC 2 cut(s) 437, 725
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 3 cut(s) 55, 91, 805
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 1 cut(s) 103
HphI GGTGA 2 cut(s) 637, 658
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 21, 483
Hpy188III TCNNGA 2 cut(s) 578, 830
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 435, 696
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 374, 397, 529, 544, 650, 792
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
HpyF3I CTNAG 3 cut(s) 585, 682, 810
Hsp92II CATG 4 cut(s) 460, 548, 754, 788
HspAI GCGC 2 cut(s) 437, 725
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 379, 775
LmnI GCTCC 2 cut(s) 112, 456
Lsp1109I GCAGC 5 cut(s) 48, 381, 435, 513, 634
LweI GCATC 3 cut(s) 448, 659, 676
MaeI CTAG 1 cut(s) 434
MaeIII GTNAC 6 cut(s) 185, 273, 365, 487, 578, 625
MalI GATC 2 cut(s) 381, 777
MboI GATC 2 cut(s) 379, 775
MboII GAAGA 2 cut(s) 37, 772
MfeI CAATTG 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 306, 340
MluCI AATT 4 cut(s) 149, 555, 619, 695
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 44, 298
MseI TTAA 3 cut(s) 201, 264, 495
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 2 cut(s) 334, 344
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 2 cut(s) 334, 344
MvnI CGCG 1 cut(s) 671
MwoI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
NdeII GATC 2 cut(s) 379, 775
NlaIII CATG 4 cut(s) 460, 548, 754, 788
NmeAIII GCCGAG 1 cut(s) 747
NmuCI GTSAC 4 cut(s) 185, 487, 578, 625
NspI RCATGY 2 cut(s) 548, 754
PaqCI CACCTGC 1 cut(s) 560
PfeI GAWTC 2 cut(s) 91, 805
PkrI GCNGC 6 cut(s) 63, 173, 396, 450, 528, 649
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 332, 342
PspFI CCCAGC 2 cut(s) 115, 131
PspGI CCWGG 2 cut(s) 332, 342
PspPI GGNCC 1 cut(s) 330
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 201, 264, 495
SatI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
Sau3AI GATC 2 cut(s) 379, 775
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 334, 344
SduI GDGCHC 2 cut(s) 306, 340
SetI ASST 8 cut(s) 117, 209, 239, 325, 504, 528, 574, 678
SfaNI GCATC 3 cut(s) 448, 659, 676
Sse9I AATT 4 cut(s) 149, 555, 619, 695
SsiI CCGC 4 cut(s) 172, 240, 363, 669
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 332, 342
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 287
TasI AATT 4 cut(s) 149, 555, 619, 695
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 91, 805
Tru1I TTAA 3 cut(s) 201, 264, 495
Tru9I TTAA 3 cut(s) 201, 264, 495
TscAI CASTG 2 cut(s) 275, 389
TseFI GTSAC 4 cut(s) 185, 487, 578, 625
TseI GCWGC 5 cut(s) 61, 394, 448, 526, 647
Tsp45I GTSAC 4 cut(s) 185, 487, 578, 625
TspDTI ATGAA 2 cut(s) 761, 818
TspGWI ACGGA 3 cut(s) 125, 199, 417
TspRI CASTG 2 cut(s) 275, 389
XapI RAATTY 2 cut(s) 555, 695
XceI RCATGY 2 cut(s) 548, 754
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.