Rh6BG376200

TLC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016678
Physical Location & Seq
Reverse (-)
60505892 .. 60508104
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG376200.1

Sequence Viewer

Length: 837 bp
ATGGGGAGGACACGGCCTCCGACGCAGGAAAAGTCAGGGGCTTTCTTCTTGGCGACTCTGCTGCTCTGGTTCGTCTCTGTTTGGTTTGAGATTCTGTTCAACCGGCGGACGGAGCTGGGTTATATTATCGCCGGGTGTGGCTTTTACCAATTGGCTAACTGGGTCTGTCGCCGCTTTGTATCCCGTGACCCTCTCTTTGTTAACACCTCCGTCTCTCTCCTCCACTCCTCTATTACCTCCTCTTCTGTTGTATTTATTTTGGTTAATCACTGGTTACAAAATGGTTCGAGTGGGATGTTTGAGCACTCACAGTTGGTTGGAGGTACTTGGGCGTGGGCACACCAGGCTTTGTGCTTCTCGTGCGGTTACTTTGCATACGATCAGTGGGATATGCTGCATTACGGATTATATAGTGGTTTTATCCCTTCCATCCTAGCGCATCATCTGCTGCTCCTCATGTGCTTCACTCTTGCTTTGTATCGGAATGTGACCATTAATTACCTTATTCTCACTCTCATTTGTGAGCTGCACTCTATCTTTCTGCATGTGAGGAAAATTCGGCGAATGGCAGGTGTTCGTGACGCTAAGAGCAACATTGTCAAGGCAGAATGGGTTTTGAATTGGGTGACTTTCACTTTAGCAAGGGCTGCATCTCACATTCTCATCACCACCAAGCTCATCTTAGATGCTCATAAATTTGGAAGGGGAGTGGAACTGCCTATTGCGCTGTTGGGAATGTTTGGAATGAACATGCTGAATACTTTTCTCGGCGTTGATCTCTTCCATGCTTGCAAGAGAGAGATGAATCCTCAGCATACTAATACTCATCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

278

Amino Acids

31.82

Weight (kDa)

9.16

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 66 - 258 3e-19 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21790
fragaria_vesca FvH4_2g26990
malus_domestica MD08G1162300.v1.1 MD15G1347700.v1.1
prunus_persica Prupe.1G495500_v2.0.a1
pyrus_communis pycom15g31170
rosa_chinensis RchiOBHm_Chr6g0295871
rosa_laevigata RLG00000011761
rosa_multiflora Rmu_ssc0000277.1_g000001
rosa_roxburghii Rroxscaffold_7G00172100
rosa_rugosa Rorug06G0254900
rosa_samantha Rh6BG376200 Rh6CG382300
rosa_wichuraiana Rw6G032120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AciI CCGC 3 cut(s) 106, 172, 363
AcsI RAATTY 2 cut(s) 555, 695
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 100, 619
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 3 cut(s) 115, 526, 676
AluI AGCT 3 cut(s) 115, 526, 676
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 79, 217
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 5 cut(s) 61, 394, 448, 526, 647
ApoI RAATTY 2 cut(s) 555, 695
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 2 cut(s) 439, 727
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 637, 658
BaeGI GKGCMC 1 cut(s) 340
BauI CACGAG 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 5 cut(s) 48, 381, 435, 513, 634
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 344
BciVI GTATCC 1 cut(s) 190
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 79, 217
BfaI CTAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
BlsI GCNGC 6 cut(s) 63, 173, 396, 450, 528, 649
Bme1390I CCNGG 2 cut(s) 133, 344
BmrFI CCNGG 2 cut(s) 133, 344
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 3 cut(s) 448, 659, 676
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 515, 547
Bpu10I CCTNAGC 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 133
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 164, 275
BseBI CCWGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 300, 429
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 2 cut(s) 164, 275
BseRI GAGGAG 4 cut(s) 209, 217, 229, 443
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 5 cut(s) 48, 381, 435, 513, 634
BseYI CCCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 512
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 103, 132
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 79, 217
BsmBI CGTCTC 2 cut(s) 79, 217
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 306, 340
Bsp143I GATC 2 cut(s) 379, 775
BspACI CCGC 3 cut(s) 106, 172, 363
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 823
BspMI ACCTGC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 2 cut(s) 164, 275
BssAI RCCGGY 1 cut(s) 102
BssMI GATC 2 cut(s) 379, 775
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 247, 785
BstAPI GCANNNNNTGC 2 cut(s) 445, 647
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 3 cut(s) 585, 682, 810
BstF5I GGATG 2 cut(s) 300, 429
BstHHI GCGC 2 cut(s) 439, 727
BstKTI GATC 2 cut(s) 382, 778
BstMAI GTCTC 2 cut(s) 79, 217
BstMBI GATC 2 cut(s) 379, 775
BstMWI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 548, 754
BstSCI CCNGG 2 cut(s) 131, 342
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 5 cut(s) 48, 381, 435, 513, 634
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 300, 429
BtsIMutI CAGTG 2 cut(s) 268, 389
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 790
CfoI GCGC 2 cut(s) 439, 727
Cfr10I RCCGGY 1 cut(s) 102
CseI GACGC 2 cut(s) 31, 590
Csp6I GTAC 1 cut(s) 324
CviAII CATG 4 cut(s) 457, 545, 751, 785
CviJI RGCY 9 cut(s) 16, 41, 115, 141, 155, 347, 526, 647, 676
CviKI_1 RGCY 9 cut(s) 16, 41, 115, 141, 155, 347, 526, 647, 676
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 585, 682, 810
DpnI GATC 2 cut(s) 381, 777
DpnII GATC 2 cut(s) 379, 775
Eam1104I CTCTTC 2 cut(s) 247, 785
EarI CTCTTC 2 cut(s) 247, 785
EciI GGCGGA 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 342
Esp3I CGTCTC 2 cut(s) 79, 217
FaeI CATG 4 cut(s) 460, 548, 754, 788
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 4 cut(s) 456, 544, 750, 784
Fnu4HI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
FokI GGATG 2 cut(s) 307, 416
Fsp4HI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 438, 726
GluI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
GsaI CCCAGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 103, 132
HgaI GACGC 2 cut(s) 31, 590
HhaI GCGC 2 cut(s) 439, 727
Hin1II CATG 4 cut(s) 460, 548, 754, 788
Hin6I GCGC 2 cut(s) 437, 725
HinP1I GCGC 2 cut(s) 437, 725
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 3 cut(s) 55, 91, 805
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 2 cut(s) 103, 132
HphI GGTGA 2 cut(s) 637, 658
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 21, 483
Hpy188III TCNNGA 2 cut(s) 578, 830
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 435, 696
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 374, 397, 529, 544, 650, 792
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
HpyF3I CTNAG 3 cut(s) 585, 682, 810
Hsp92II CATG 4 cut(s) 460, 548, 754, 788
HspAI GCGC 2 cut(s) 437, 725
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 379, 775
LmnI GCTCC 2 cut(s) 112, 456
Lsp1109I GCAGC 5 cut(s) 48, 381, 435, 513, 634
LweI GCATC 3 cut(s) 448, 659, 676
MaeI CTAG 1 cut(s) 434
MaeIII GTNAC 6 cut(s) 185, 273, 365, 487, 578, 625
MalI GATC 2 cut(s) 381, 777
MboI GATC 2 cut(s) 379, 775
MboII GAAGA 3 cut(s) 37, 234, 772
MfeI CAATTG 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 306, 340
MluCI AATT 5 cut(s) 149, 496, 555, 619, 695
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 44, 298
MseI TTAA 3 cut(s) 201, 264, 495
MspI CCGG 2 cut(s) 103, 132
MspR9I CCNGG 2 cut(s) 133, 344
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 7 cut(s) 22, 112, 344, 360, 445, 647, 724
NciI CCSGG 1 cut(s) 133
NdeII GATC 2 cut(s) 379, 775
NlaIII CATG 4 cut(s) 460, 548, 754, 788
NmeAIII GCCGAG 1 cut(s) 747
NmuCI GTSAC 4 cut(s) 185, 487, 578, 625
NspI RCATGY 2 cut(s) 548, 754
PaqCI CACCTGC 1 cut(s) 560
PfeI GAWTC 2 cut(s) 91, 805
PkrI GCNGC 6 cut(s) 63, 173, 396, 450, 528, 649
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 1 cut(s) 342
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 201, 264, 495
SatI GCNGC 6 cut(s) 62, 172, 395, 449, 527, 648
Sau3AI GATC 2 cut(s) 379, 775
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 133, 344
SduI GDGCHC 2 cut(s) 306, 340
SetI ASST 8 cut(s) 117, 209, 239, 325, 504, 528, 574, 678
SfaNI GCATC 3 cut(s) 448, 659, 676
Sse9I AATT 5 cut(s) 149, 496, 555, 619, 695
SsiI CCGC 3 cut(s) 106, 172, 363
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 131, 342
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 287
TasI AATT 5 cut(s) 149, 496, 555, 619, 695
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 91, 805
Tru1I TTAA 3 cut(s) 201, 264, 495
Tru9I TTAA 3 cut(s) 201, 264, 495
TscAI CASTG 2 cut(s) 275, 389
TseFI GTSAC 4 cut(s) 185, 487, 578, 625
TseI GCWGC 5 cut(s) 61, 394, 448, 526, 647
Tsp45I GTSAC 4 cut(s) 185, 487, 578, 625
TspDTI ATGAA 2 cut(s) 761, 818
TspGWI ACGGA 3 cut(s) 125, 199, 417
TspRI CASTG 2 cut(s) 275, 389
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 2 cut(s) 555, 695
XceI RCATGY 2 cut(s) 548, 754
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.