Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Reverse (-)

7727577 .. 7729649

Gene Structure 2073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAACGTGGAGCTCCCTTCTCTCACTATCAGCTACCAAAATCCATCTCTGAATTGAACTTGGACCAGCACAGCAACAACCCAACCCCAATGACCAGCTCAGTCGTAGTAGCCGGCGCCGGTGACAAGAACAATGGTATCGTGGTCCAGCAGCAACCACCATGTGTGGCTCGTGAGCAAGACCAATACATGCCAATCGCAAACGTCATAAGAATCATGCGTAAAACCTTACCGTCTCACGCCAAAATCTCTGACGACGCCAAAGAAACGATTCAAGAATGTGTCTCCGAGTACATCAGCTTCGTGACCGGTGAAGCCAACGAGCGTTGCCAACGTGAGCAACGTAAGACCATAACTGCTGAAGATATCCTTTGGGCTATGAGCAAGCTTGGGTTCGATAACTACGTGGACCCCCTCACCGTGTTCATTAACCGGTACCGTGAGATAGAGACCGATCGTGGTTCTGCACTTAGAGGTGAGCCACCGTCGTTGAGACAAACCTATGGAGGAAATGGTATTGGGTTTCACGGCCCATCTCATGGCCTACCTCCTCCGGGTCCTTATGGTTATGGTATGTTGGACCAATCCATGGTTATGGGAGGTGGTCGGTACTACCAAAACGGGTCGTCGGGTCAAGATGAATCCAGTGTTGGTGGTGGCTCTTCGTCTTCCATTAACGGAATGCCGGCTTTTGACCATTATGGTCAGTATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

238

Amino Acids

26.07

Weight (kDa)

5.68

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	63 - 127	5e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	64 - 127	1.6e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	435
AccB1I	GGYRCC	2 cut(s)	116, 435
AccB7I	CCANNNNNTGG	2 cut(s)	539, 589
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	2 cut(s)	117, 258
AdeI	CACNNNGTG	1 cut(s)	164
AfaI	GTAC	3 cut(s)	293, 437, 611
AfiI	CCNNNNNNNGG	3 cut(s)	539, 554, 589
AgeI	ACCGGT	2 cut(s)	308, 432
AgsI	TTSAA	2 cut(s)	58, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	5 cut(s)	14, 34, 99, 300, 388
AluI	AGCT	5 cut(s)	14, 34, 99, 300, 388
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	4 cut(s)	240, 289, 443, 487
AoxI	GGCC	2 cut(s)	529, 541
ApeKI	GCWGC	1 cut(s)	151
AsiGI	ACCGGT	2 cut(s)	308, 432
Asp700I	GAANNNNTTC	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	6 cut(s)	64, 145, 409, 530, 557, 580
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	4 cut(s)	134, 323, 409, 488
AvaII	GGWCC	5 cut(s)	64, 145, 409, 557, 580
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BanI	GGYRCC	2 cut(s)	116, 435
BanII	GRGCYC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	53, 541
BceAI	ACGGC	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	4 cut(s)	240, 289, 443, 487
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	5 cut(s)	64, 145, 409, 557, 580
BmgT120I	GGNCC	6 cut(s)	64, 145, 409, 530, 557, 580
BmiI	GGNNCC	4 cut(s)	118, 411, 437, 558
BmrFI	CCNGG	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	406
BsaHI	GRCGYC	2 cut(s)	117, 258
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	588
BsaWI	WCCGGW	2 cut(s)	308, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	539, 554, 589
Bse118I	RCCGGY	5 cut(s)	113, 119, 308, 432, 685
Bse1I	ACTGG	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	588
BseLI	CCNNNNNNNGG	3 cut(s)	539, 554, 589
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	2 cut(s)	531, 543
BshNI	GGYRCC	2 cut(s)	116, 435
BshTI	ACCGGT	2 cut(s)	308, 432
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	6 cut(s)	114, 120, 309, 433, 554, 686
BslI	CCNNNNNNNGG	3 cut(s)	539, 554, 589
BsmAI	GTCTC	4 cut(s)	240, 289, 443, 487
BsmBI	CGTCTC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	531, 543
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	454
Bsp19I	CCATGG	1 cut(s)	588
BspANI	GGCC	2 cut(s)	531, 543
BspCNI	CTCAG	1 cut(s)	113
BspLI	GGNNCC	4 cut(s)	118, 411, 437, 558
BspQI	GCTCTTC	1 cut(s)	667
BspT107I	GGYRCC	2 cut(s)	116, 435
BspTNI	GGTCTC	1 cut(s)	443
BsrFI	RCCGGY	5 cut(s)	113, 119, 308, 432, 685
BsrI	ACTGG	1 cut(s)	645
BssAI	RCCGGY	5 cut(s)	113, 119, 308, 432, 685
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	1 cut(s)	454
BssNI	GRCGYC	2 cut(s)	117, 258
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	234, 421, 440, 486
Bst6I	CTCTTC	1 cut(s)	667
BstACI	GRCGYC	2 cut(s)	117, 258
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	115, 386, 687
BstDEI	CTNAG	2 cut(s)	100, 470
BstDSI	CCRYGG	1 cut(s)	588
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	4 cut(s)	240, 289, 443, 487
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	660
BstXI	CCANNNNNNTGG	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	531, 543
BtgI	CCRYGG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	115, 386, 687
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	5 cut(s)	113, 119, 308, 432, 685
Cfr13I	GGNCC	6 cut(s)	64, 145, 409, 530, 557, 580
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	292, 436, 610
CspAI	ACCGGT	2 cut(s)	308, 432
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	5 cut(s)	162, 190, 217, 539, 589
CviQI	GTAC	3 cut(s)	292, 436, 610
DdeI	CTNAG	2 cut(s)	100, 470
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DraIII	CACNNNGTG	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	5 cut(s)	64, 145, 409, 557, 580
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	5 cut(s)	165, 193, 220, 542, 592
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	5 cut(s)	161, 189, 216, 538, 588
Fnu4HI	GCNGC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	152
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	531, 543
HapII	CCGG	6 cut(s)	114, 120, 309, 433, 554, 686
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	2 cut(s)	117, 258
Hin1II	CATG	5 cut(s)	165, 193, 220, 542, 592
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	3 cut(s)	213, 271, 641
HpaII	CCGG	6 cut(s)	114, 120, 309, 433, 554, 686
HphI	GGTGA	4 cut(s)	134, 323, 409, 488
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	3 cut(s)	52, 253, 289
Hpy188III	TCNNGA	4 cut(s)	173, 275, 304, 635
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	3 cut(s)	260, 490, 631
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	4 cut(s)	234, 421, 440, 486
HpyCH4IV	ACGT	5 cut(s)	7, 204, 334, 343, 405
HpyCH4V	TGCA	1 cut(s)	467
HpyF3I	CTNAG	2 cut(s)	100, 470
HpySE526I	ACGT	5 cut(s)	7, 204, 334, 343, 405
Hsp92I	GRCGYC	2 cut(s)	117, 258
Hsp92II	CATG	5 cut(s)	165, 193, 220, 542, 592
HspAI	GCGC	1 cut(s)	117
KasI	GGCGCC	1 cut(s)	116
KpnI	GGTACC	1 cut(s)	439
KroI	GCCGGC	2 cut(s)	113, 685
KroNI	GCCGGC	2 cut(s)	115, 687
Kzo9I	GATC	1 cut(s)	454
LguI	GCTCTTC	1 cut(s)	667
LmnI	GCTCC	2 cut(s)	11, 19
Lsp1109I	GCAGC	1 cut(s)	163
MaeII	ACGT	5 cut(s)	7, 204, 334, 343, 405
MaeIII	GTNAC	2 cut(s)	122, 304
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	3 cut(s)	374, 654, 660
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	1 cut(s)	53
Mly113I	GGCGCC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	6 cut(s)	425, 467, 500, 558, 561, 593
MroNI	GCCGGC	2 cut(s)	113, 685
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	2 cut(s)	429, 675
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	6 cut(s)	114, 120, 309, 433, 554, 686
MspR9I	CCNGG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	687
NaeI	GCCGGC	2 cut(s)	115, 687
NarI	GGCGCC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	1 cut(s)	454
NgoMIV	GCCGGC	2 cut(s)	113, 685
NlaIII	CATG	5 cut(s)	165, 193, 220, 542, 592
NlaIV	GGNNCC	4 cut(s)	118, 411, 437, 558
NmuCI	GTSAC	2 cut(s)	122, 304
NspI	RCATGY	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	667
PcsI	WCGNNNNNNNCGW	2 cut(s)	340, 402
PctI	GAATGC	1 cut(s)	687
PdiI	GCCGGC	2 cut(s)	115, 687
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	213, 271, 641
PflMI	CCANNNNNTGG	2 cut(s)	539, 589
PinAI	ACCGGT	2 cut(s)	308, 432
PkrI	GCNGC	1 cut(s)	153
Ple19I	CGATCG	1 cut(s)	457
PluTI	GGCGCC	1 cut(s)	120
Ppu21I	YACGTR	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	557
Psp124BI	GAGCTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	557
PspN4I	GGNNCC	4 cut(s)	118, 411, 437, 558
PspPI	GGNCC	6 cut(s)	64, 145, 409, 530, 557, 580
PspPPI	RGGWCCY	1 cut(s)	557
PvuI	CGATCG	1 cut(s)	457
RsaI	GTAC	3 cut(s)	293, 437, 611
RsaNI	GTAC	3 cut(s)	292, 436, 610
RseI	CAYNNNNRTG	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	667
SaqAI	TTAA	2 cut(s)	429, 675
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	6 cut(s)	64, 145, 409, 530, 557, 580
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	118
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	5 cut(s)	64, 145, 409, 557, 580
SmiMI	CAYNNNNRTG	1 cut(s)	593
Sse9I	AATT	1 cut(s)	53
SspDI	GGCGCC	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	4 cut(s)	234, 421, 440, 486
TaiI	ACGT	5 cut(s)	10, 207, 337, 346, 408
TaqI	TCGA	1 cut(s)	396
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	213, 271, 641
Tru1I	TTAA	2 cut(s)	429, 675
Tru9I	TTAA	2 cut(s)	429, 675
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	2 cut(s)	122, 304
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	122, 304
TspDTI	ATGAA	2 cut(s)	415, 654
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	652
Van91I	CCANNNNNTGG	2 cut(s)	539, 589
VpaK11BI	GGWCC	5 cut(s)	64, 145, 409, 557, 580
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.