Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Forward (+)

24691097 .. 24691663

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1179600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCGACAGCCAACGTGGTACGCATAATGCGTCGCGTGCTCCCTCCGCATGCAAAAATAACAGAAGCCGCAAAGGAGACCGTGCAGGAATGTGTGTCTGAGTACATCGCCTTCATAACTGCTGAAGCCAACCAGCGTAGCCAGCGCGAGCAGCGCAAGACCGTCTCTGCCGAGGACATCATCTGGGCCATGAGCAAGCTTGGCTTCGAGAACTACGCCGACCCCCTCAACGTTTTCCTCCATCGCTACCGGGAGTCTGAGAATTCAGACCGCTCTCAGTTTATGATCAGGGAGCATCCGCTAATGGACTATGGCCCTGCTGTGCCTTCTGGACCTGCTGGACCCCAGGTTGCGATGATGCCTCCCCCACTGCTACCGCCTTTTGTGCAGGAGTTTCCTCTAGGTTTCGACCAGCATGGCCCTCCGATGCTTGACCCTTCGATGATTGAGATGTTTTTGGATGGTGGTTCCTCCACTGGTGCTGGTGAAGGCGGGTCATCGTCGTCTTTTGGGGCTGAGGACCAGAACTGGCTGGGGGGATTTGATCCGTCGGCTCAGTCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

189

Amino Acids

20.69

Weight (kDa)

4.88

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	1 - 64	4.3e-21	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	273
AccII	CGCG	2 cut(s)	36, 147
AciI	CCGC	6 cut(s)	47, 69, 271, 299, 377, 492
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	21, 104
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	71, 169
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	3 cut(s)	186, 313, 418
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	2 cut(s)	147, 156
AspS9I	GGNCC	6 cut(s)	186, 314, 332, 341, 419, 520
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	3 cut(s)	332, 341, 520
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	249, 455
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	71, 169
BfaI	CTAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	69, 152
BlsI	GCNGC	2 cut(s)	70, 153
Bme1390I	CCNGG	2 cut(s)	251, 347
Bme18I	GGWCC	3 cut(s)	332, 341, 520
BmgT120I	GGNCC	6 cut(s)	186, 314, 332, 341, 419, 520
BmiI	GGNNCC	2 cut(s)	343, 469
BmrFI	CCNGG	2 cut(s)	251, 347
BmsI	GCATC	3 cut(s)	304, 348, 417
Bpu10I	CCTNAGC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	171, 345
Bse1I	ACTGG	2 cut(s)	481, 533
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	171, 345
BseGI	GGATG	2 cut(s)	295, 466
BseMII	CTCAG	4 cut(s)	90, 249, 290, 507
BseNI	ACTGG	2 cut(s)	481, 533
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	532
BsgI	GTGCAG	2 cut(s)	104, 407
Bsh1236I	CGCG	2 cut(s)	36, 147
BshFI	GGCC	3 cut(s)	188, 315, 420
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	71, 169
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	188, 315, 420
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	285, 544
BspACI	CCGC	6 cut(s)	47, 69, 271, 299, 377, 492
BspANI	GGCC	3 cut(s)	188, 315, 420
BspCNI	CTCAG	4 cut(s)	91, 250, 289, 508
BspFNI	CGCG	2 cut(s)	36, 147
BspLI	GGNNCC	2 cut(s)	343, 469
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	481, 533
BssECI	CCNNGG	2 cut(s)	171, 345
BssMI	GATC	2 cut(s)	285, 544
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	82, 163
BstC8I	GCNNGC	5 cut(s)	38, 51, 143, 149, 197
BstDEI	CTNAG	6 cut(s)	99, 258, 276, 516, 555, 561
BstF5I	GGATG	2 cut(s)	295, 466
BstFNI	CGCG	2 cut(s)	36, 147
BstHHI	GCGC	2 cut(s)	147, 156
BstKTI	GATC	2 cut(s)	288, 547
BstMAI	GTCTC	2 cut(s)	71, 169
BstMBI	GATC	2 cut(s)	285, 544
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 46, 142, 151, 153, 201, 385
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	249, 345
BstUI	CGCG	2 cut(s)	36, 147
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	188, 315, 420
BtgZI	GCGATG	3 cut(s)	91, 227, 368
BtsCI	GGATG	2 cut(s)	295, 466
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	368, 474
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	5 cut(s)	38, 51, 143, 149, 197
CfoI	GCGC	2 cut(s)	147, 156
Cfr13I	GGNCC	6 cut(s)	186, 314, 332, 341, 419, 520
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	20, 103
CviAII	CATG	3 cut(s)	50, 190, 416
CviQI	GTAC	2 cut(s)	20, 103
DdeI	CTNAG	6 cut(s)	99, 258, 276, 516, 555, 561
DpnI	GATC	2 cut(s)	287, 546
DpnII	GATC	2 cut(s)	285, 544
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	3 cut(s)	332, 341, 520
Eco57I	CTGAAG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	3 cut(s)	53, 193, 419
FaiI	YATR	7 cut(s)	26, 51, 116, 191, 284, 312, 417
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	3 cut(s)	49, 189, 415
FauI	CCCGC	1 cut(s)	485
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	69, 152
FokI	GGATG	2 cut(s)	282, 473
Fsp4HI	GCNGC	2 cut(s)	69, 152
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	146, 155
GluI	GCNGC	2 cut(s)	69, 152
GsaI	CCCAGC	1 cut(s)	536
HaeIII	GGCC	3 cut(s)	188, 315, 420
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	147, 156
Hin1II	CATG	3 cut(s)	53, 193, 419
Hin6I	GCGC	2 cut(s)	145, 154
HinP1I	GCGC	2 cut(s)	145, 154
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	497
Hpy188I	TCNGA	4 cut(s)	100, 259, 268, 426
Hpy188III	TCNNGA	2 cut(s)	208, 330
Hpy99I	CGWCG	3 cut(s)	36, 505, 553
HpyAV	CCTTC	4 cut(s)	121, 336, 447, 482
HpyCH4III	ACNGT	2 cut(s)	82, 163
HpyCH4IV	ACGT	2 cut(s)	15, 231
HpyCH4V	TGCA	3 cut(s)	53, 85, 388
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 46, 142, 151, 153, 201, 385
HpyF3I	CTNAG	6 cut(s)	99, 258, 276, 516, 555, 561
HpySE526I	ACGT	2 cut(s)	15, 231
Hsp92II	CATG	3 cut(s)	53, 193, 419
HspAI	GCGC	2 cut(s)	145, 154
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	285, 544
LmnI	GCTCC	2 cut(s)	45, 292
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	3 cut(s)	304, 348, 417
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	2 cut(s)	15, 231
MalI	GATC	2 cut(s)	287, 546
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	2 cut(s)	285, 544
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	9 cut(s)	54, 166, 236, 248, 372, 408, 432, 481, 511
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	251, 347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	36, 147
MwoI	GCNNNNNNNGC	7 cut(s)	37, 46, 142, 151, 153, 201, 385
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	285, 544
NlaIII	CATG	3 cut(s)	53, 193, 419
NlaIV	GGNNCC	2 cut(s)	343, 469
NmeAIII	GCCGAG	1 cut(s)	196
NspI	RCATGY	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	70, 153
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	343, 469
PspPI	GGNCC	6 cut(s)	186, 314, 332, 341, 419, 520
RsaI	GTAC	2 cut(s)	21, 104
RsaNI	GTAC	2 cut(s)	20, 103
SatI	GCNGC	2 cut(s)	69, 152
Sau3AI	GATC	2 cut(s)	285, 544
Sau96I	GGNCC	6 cut(s)	186, 314, 332, 341, 419, 520
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	251, 347
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	18, 201, 234, 337, 351, 406
SfaNI	GCATC	3 cut(s)	304, 348, 417
SinI	GGWCC	3 cut(s)	332, 341, 520
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	6 cut(s)	47, 69, 271, 299, 377, 492
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	249, 345
TaaI	ACNGT	2 cut(s)	82, 163
TaiI	ACGT	2 cut(s)	18, 234
TaqI	TCGA	3 cut(s)	207, 408, 440
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	71
TscAI	CASTG	2 cut(s)	375, 481
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	2 cut(s)	375, 481
VpaK11BI	GGWCC	3 cut(s)	332, 341, 520
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	53
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.