Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Reverse (-)

33870441 .. 33872321

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGACCCTGTGAGTGGCCTCGATCGCTTTCGCAGCAACAACAACAACAGGCAGGAAAAATCAACCACCGCCTCGGAACCAGCGCAGGTCACTGATGCCAACAACCCCGACGCCGTTAACGTTAACGGCGGCAACAACTCGGAAGCTGCAATTCCTCGTCTGCCTGTGGCGCCCTGCATGGTCCGTGAACAGGACCAGTACATGCCTATTGCTAATGTGATACGCATAATGCGGAGGATATTGCCGCCCCATGCAAAGATCTCCGACGACGCAAAAGAGACTGTCCAGGAGTGCGTGTCGGAGTACATCAGCTTTATCACCGGAGAGGCCAACGAGCGGTGCCAGCGGGAGCAGCGCAAGACTGTGACGGCTGAGGATGTGCTGTGGGCAATGAGGAAGCTAGGGTTCGACAACTACATCGAGCCCCTCAGTCTTTTCCTGAGCAAGTATAGGGAGGCTGAGGGCACTGAACGCAGTTCATCCCTGTTTGCAAAGTGTGAGAGGGGAGATGGCGGGATGGTTGAATATGCGCCGGTGCTCGGGCATTATGGGCCACCTGGGTTTGGTCTGGCGGCCCAGCAGCCCTGGATGTCTAAGGCTGGGGCGATGAGTGGGTATTATGGTGGAGCGGGTGGTAGTGGCAATGAAGGTGGTGGAGCTGGATCATCTTCTGCGTCCCAGAGACAGGGACAAAGTGCTATGGGTGGTGGGTTTGACCCTTTTGCTCAGTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

245

Amino Acids

26.41

Weight (kDa)

5.38

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	59 - 132	8.4e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	68 - 131	4.2e-25	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccB1I	GGYRCC	2 cut(s)	169, 339
AccBSI	CCGCTC	2 cut(s)	337, 629
AciI	CCGC	9 cut(s)	69, 129, 232, 245, 337, 346, 513, 572, 629
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	670
AcyI	GRCGYC	2 cut(s)	111, 170
AfaI	GTAC	2 cut(s)	200, 305
AfiI	CCNNNNNNNGG	6 cut(s)	14, 190, 336, 539, 563, 685
AgsI	TTSAA	1 cut(s)	524
AjnI	CCWGG	3 cut(s)	285, 556, 584
AluBI	AGCT	4 cut(s)	146, 312, 400, 659
AluI	AGCT	4 cut(s)	146, 312, 400, 659
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	272, 676
AlwI	GGATC	1 cut(s)	670
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	4 cut(s)	16, 327, 551, 573
ApeKI	GCWGC	4 cut(s)	33, 146, 352, 580
AspLEI	GCGC	4 cut(s)	85, 172, 357, 532
AspS9I	GGNCC	5 cut(s)	4, 181, 193, 551, 574
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	3 cut(s)	4, 181, 193
BaeGI	GKGCMC	1 cut(s)	467
BanI	GGYRCC	2 cut(s)	169, 339
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	540
BbvCI	CCTCAGC	2 cut(s)	372, 459
BbvI	GCAGC	4 cut(s)	45, 133, 364, 592
BccI	CCATC	2 cut(s)	503, 511
BceAI	ACGGC	3 cut(s)	98, 142, 384
BciT130I	CCWGG	3 cut(s)	287, 558, 586
BcoDI	GTCTC	2 cut(s)	272, 676
BfaI	CTAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	7 cut(s)	34, 130, 147, 245, 353, 573, 581
BlsI	GCNGC	7 cut(s)	35, 131, 148, 246, 354, 574, 582
Bme1390I	CCNGG	3 cut(s)	287, 558, 586
Bme18I	GGWCC	3 cut(s)	4, 181, 193
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	5 cut(s)	4, 181, 193, 551, 574
BmiI	GGNNCC	4 cut(s)	6, 78, 171, 341
BmrFI	CCNGG	3 cut(s)	287, 558, 586
BmsI	GCATC	1 cut(s)	85
Bpu10I	CCTNAGC	3 cut(s)	372, 440, 459
BsaHI	GRCGYC	2 cut(s)	111, 170
BsaJI	CCNNGG	3 cut(s)	72, 557, 584
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	6 cut(s)	14, 190, 336, 539, 563, 685
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	2 cut(s)	396, 649
BseBI	CCWGG	3 cut(s)	287, 558, 586
BseDI	CCNNGG	3 cut(s)	72, 557, 584
BseGI	GGATG	4 cut(s)	382, 479, 522, 594
BseLI	CCNNNNNNNGG	6 cut(s)	14, 190, 336, 539, 563, 685
BseMI	GCAATG	2 cut(s)	396, 649
BseMII	CTCAG	4 cut(s)	363, 431, 442, 450
BseNI	ACTGG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	4 cut(s)	45, 133, 364, 592
BseYI	CCCAGC	2 cut(s)	576, 599
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	4 cut(s)	18, 329, 553, 575
BshNI	GGYRCC	2 cut(s)	169, 339
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	321, 533
BslFI	GGGAC	2 cut(s)	661, 702
BslI	CCNNNNNNNGG	6 cut(s)	14, 190, 336, 539, 563, 685
BsmAI	GTCTC	2 cut(s)	272, 676
BsmFI	GGGAC	2 cut(s)	661, 702
BsnI	GGCC	4 cut(s)	18, 329, 553, 575
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	426, 467, 540
Bsp143I	GATC	3 cut(s)	22, 258, 662
BspACI	CCGC	9 cut(s)	69, 129, 232, 245, 337, 346, 513, 572, 629
BspANI	GGCC	4 cut(s)	18, 329, 553, 575
BspCNI	CTCAG	4 cut(s)	364, 432, 441, 451
BspLI	GGNNCC	4 cut(s)	6, 78, 171, 341
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	670
BspT107I	GGYRCC	2 cut(s)	169, 339
BsrBI	CCGCTC	2 cut(s)	337, 629
BsrDI	GCAATG	2 cut(s)	396, 649
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	72, 557, 584
BssMI	GATC	3 cut(s)	22, 258, 662
BssNI	GRCGYC	2 cut(s)	111, 170
Bst2UI	CCWGG	3 cut(s)	287, 558, 586
Bst4CI	ACNGT	2 cut(s)	283, 364
BstACI	GRCGYC	2 cut(s)	111, 170
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	6 cut(s)	372, 428, 440, 459, 594, 726
BstF5I	GGATG	4 cut(s)	382, 479, 522, 594
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	4 cut(s)	85, 172, 357, 532
BstKTI	GATC	3 cut(s)	25, 261, 665
BstMAI	GTCTC	2 cut(s)	272, 676
BstMBI	GATC	3 cut(s)	22, 258, 662
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 33, 169, 343, 352, 471, 550
BstNI	CCWGG	3 cut(s)	287, 558, 586
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	3 cut(s)	285, 556, 584
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	4 cut(s)	45, 133, 364, 592
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	18, 329, 553, 575
BtgZI	GCGATG	1 cut(s)	620
BtsCI	GGATG	4 cut(s)	382, 479, 522, 594
BtsIMutI	CAGTG	2 cut(s)	90, 465
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	4 cut(s)	85, 172, 357, 532
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	5 cut(s)	4, 181, 193, 551, 574
CseI	GACGC	3 cut(s)	119, 278, 663
Csp6I	GTAC	2 cut(s)	199, 304
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	3 cut(s)	178, 202, 251
CviQI	GTAC	2 cut(s)	199, 304
DdeI	CTNAG	6 cut(s)	372, 428, 440, 459, 594, 726
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	3 cut(s)	24, 260, 664
DpnII	GATC	3 cut(s)	22, 258, 662
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	3 cut(s)	4, 181, 193
Eco88I	CYCGRG	1 cut(s)	539
EcoRII	CCWGG	3 cut(s)	285, 556, 584
EcoT38I	GRGCYC	1 cut(s)	426
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
FaeI	CATG	3 cut(s)	181, 205, 254
FaiI	YATR	9 cut(s)	179, 203, 227, 252, 450, 528, 549, 621, 701
FaqI	GGGAC	2 cut(s)	661, 702
FatI	CATG	3 cut(s)	177, 201, 250
FauI	CCCGC	3 cut(s)	339, 506, 622
Fnu4HI	GCNGC	7 cut(s)	34, 130, 147, 245, 353, 573, 581
FokI	GGATG	4 cut(s)	389, 466, 529, 601
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	7 cut(s)	34, 130, 147, 245, 353, 573, 581
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	4 cut(s)	84, 171, 356, 531
GluI	GCNGC	7 cut(s)	34, 130, 147, 245, 353, 573, 581
GsaI	CCCAGC	2 cut(s)	580, 603
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	4 cut(s)	18, 329, 553, 575
HapII	CCGG	2 cut(s)	321, 533
HgaI	GACGC	3 cut(s)	119, 278, 663
HhaI	GCGC	4 cut(s)	85, 172, 357, 532
Hin1I	GRCGYC	2 cut(s)	111, 170
Hin1II	CATG	3 cut(s)	181, 205, 254
Hin6I	GCGC	4 cut(s)	83, 170, 355, 530
HinP1I	GCGC	4 cut(s)	83, 170, 355, 530
HincII	GTYRAC	2 cut(s)	118, 124
HindII	GTYRAC	2 cut(s)	118, 124
HpaI	GTTAAC	2 cut(s)	118, 124
HpaII	CCGG	2 cut(s)	321, 533
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	118, 124, 188
Hpy188I	TCNGA	4 cut(s)	76, 142, 265, 301
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	3 cut(s)	118, 124, 188
Hpy99I	CGWCG	3 cut(s)	113, 269, 272
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	2 cut(s)	283, 364
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	149, 177, 254, 491
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 33, 169, 343, 352, 471, 550
HpyF3I	CTNAG	6 cut(s)	372, 428, 440, 459, 594, 726
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	111, 170
Hsp92II	CATG	3 cut(s)	181, 205, 254
HspAI	GCGC	4 cut(s)	83, 170, 355, 530
KasI	GGCGCC	1 cut(s)	169
KspAI	GTTAAC	2 cut(s)	118, 124
Kzo9I	GATC	3 cut(s)	22, 258, 662
LmnI	GCTCC	3 cut(s)	349, 626, 656
Lsp1109I	GCAGC	4 cut(s)	45, 133, 364, 592
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	88, 364
MalI	GATC	3 cut(s)	24, 260, 664
MbiI	CCGCTC	2 cut(s)	337, 629
MboI	GATC	3 cut(s)	22, 258, 662
MboII	GAAGA	1 cut(s)	660
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	3 cut(s)	426, 467, 540
MluCI	AATT	1 cut(s)	150
Mly113I	GGCGCC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	279, 288
MseI	TTAA	3 cut(s)	117, 123, 732
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	2 cut(s)	321, 533
MspR9I	CCNGG	3 cut(s)	287, 558, 586
MvaI	CCWGG	3 cut(s)	287, 558, 586
MwoI	GCNNNNNNNGC	7 cut(s)	24, 33, 169, 343, 352, 471, 550
NarI	GGCGCC	1 cut(s)	170
NdeII	GATC	3 cut(s)	22, 258, 662
NlaIII	CATG	3 cut(s)	181, 205, 254
NlaIV	GGNNCC	4 cut(s)	6, 78, 171, 341
NmuCI	GTSAC	2 cut(s)	88, 364
NspI	RCATGY	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	7 cut(s)	35, 131, 148, 246, 354, 574, 582
Ple19I	CGATCG	1 cut(s)	25
PluTI	GGCGCC	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	285, 556, 584
PspFI	CCCAGC	2 cut(s)	576, 599
PspGI	CCWGG	3 cut(s)	285, 556, 584
PspN4I	GGNNCC	4 cut(s)	6, 78, 171, 341
PspPI	GGNCC	5 cut(s)	4, 181, 193, 551, 574
PsuI	RGATCY	1 cut(s)	258
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	200, 305
RsaNI	GTAC	2 cut(s)	199, 304
SaqAI	TTAA	3 cut(s)	117, 123, 732
SatI	GCNGC	7 cut(s)	34, 130, 147, 245, 353, 573, 581
Sau3AI	GATC	3 cut(s)	22, 258, 662
Sau96I	GGNCC	5 cut(s)	4, 181, 193, 551, 574
ScrFI	CCNGG	3 cut(s)	287, 558, 586
SduI	GDGCHC	3 cut(s)	426, 467, 540
SetI	ASST	8 cut(s)	90, 123, 148, 314, 402, 559, 652, 661
SfaNI	GCATC	1 cut(s)	85
SfoI	GGCGCC	1 cut(s)	171
SgrAI	CRCCGGYG	1 cut(s)	532
SinI	GGWCC	3 cut(s)	4, 181, 193
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	9 cut(s)	69, 129, 232, 245, 337, 346, 513, 572, 629
SspDI	GGCGCC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	3 cut(s)	285, 556, 584
TaaI	ACNGT	2 cut(s)	283, 364
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	21, 408, 420
TasI	AATT	1 cut(s)	150
TatI	WGTACW	2 cut(s)	198, 303
TauI	GCSGC	3 cut(s)	132, 247, 575
Tru1I	TTAA	3 cut(s)	117, 123, 732
Tru9I	TTAA	3 cut(s)	117, 123, 732
TscAI	CASTG	2 cut(s)	97, 472
TseFI	GTSAC	2 cut(s)	88, 364
TseI	GCWGC	4 cut(s)	33, 146, 352, 580
Tsp45I	GTSAC	2 cut(s)	88, 364
TspDTI	ATGAA	2 cut(s)	468, 660
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	97, 472
VpaK11BI	GGWCC	3 cut(s)	4, 181, 193
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.