Prupe.4G243500_v2.0.a1

Nuclear transcription factor Y subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
16087429 .. 16090365
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G243500.1

Sequence Viewer

Length: 750 bp
ATGAGAGGGCCTCCTAGCAGCAGGCATGCAAAATCGAGCTCTGCACAAGTCAACAACTCCGAGAGGAGCAACTCCAAAGTCCCAATCAACGCCACCCCAGCAGCAACCAACAGCAACGCCGCTGCTGCCGCAGCCAACGCCGGTGATCCTGCACAGCTGGCCCCACAACAATCTGTTGTTCGCGAGCAGGACCAATACATGCCTATCGCGAACGTGATCCGCATAATGCGTCGTATTTTGCCACCCCATGCAAAAATATCTGACGACGCCAAGGAGACCATCCAGGAGTGTGTGTCCGAGTACATTGCCTTCATCACTGGGGAGGCCAACGAGCGCTGCCGGCGAGAGCAGCGCAAGACCGTCACTGCCGAGGACATCCTCTGGGCGATGGGGAAGCTTGGCTTCGACAACTACGTCGAGCCCCTCACTCTTTTCCTCCAGAAGCACCGGGAGTCGGAGAACAGCGACAGGTCCACTCTGAGAGCTGAGTTTATGAAGAGGGATCGTGCAGTGGATTTTGGACCTGCTGGGCCCCCGATTGCTCTAATGCCTCCTCCTCCACCGCCTTATGGGCCGGGCTATCCTTTTGGGCCCCAGCATGGTCCTGGGATGTTCGACCCATCCATGCTTGGGATGTTTAGGGATGGGTCGTCATCTGGCTCGGGCGGAGGAGCTGGGTCTTCTTCGGCTTCAGGGGATCAGGGCCAGAATTCCTTGGAGGGGTTTGATCCGTTTGCTCAGTTCAAGTGA

Protein Analysis

250

Amino Acids

26.76

Weight (kDa)

6.44

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012711)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 532
AccII CGCG 2 cut(s) 183, 209
AciI CCGC 5 cut(s) 120, 129, 220, 563, 666
AclWI GGATC 5 cut(s) 140, 211, 510, 705, 722
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 302
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 5 cut(s) 454, 569, 599, 630, 720
AgsI TTSAA 1 cut(s) 745
AjnI CCWGG 2 cut(s) 282, 604
AluBI AGCT 5 cut(s) 39, 157, 397, 485, 674
AluI AGCT 5 cut(s) 39, 157, 397, 485, 674
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 5 cut(s) 140, 211, 510, 705, 722
Ama87I CYCGRG 1 cut(s) 661
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 7 cut(s) 8, 159, 324, 530, 572, 590, 703
ApaI GGGCCC 2 cut(s) 534, 594
ApeKI GCWGC 7 cut(s) 18, 101, 122, 125, 131, 336, 349
ApoI RAATTY 1 cut(s) 709
AspLEI GCGC 2 cut(s) 336, 354
AsuC2I CCSGG 2 cut(s) 449, 576
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 4 cut(s) 190, 471, 521, 602
BaeGI GKGCMC 2 cut(s) 534, 594
BanII GRGCYC 4 cut(s) 41, 423, 534, 594
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 7 cut(s) 30, 109, 112, 113, 143, 323, 361
BccI CCATC 4 cut(s) 287, 382, 628, 638
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 2 cut(s) 284, 606
BcnI CCSGG 2 cut(s) 449, 576
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 532
BglI GCCNNNNNGGC 1 cut(s) 571
BisI GCNGC 9 cut(s) 19, 102, 120, 123, 126, 129, 132, 337, 350
BlsI GCNGC 9 cut(s) 20, 103, 121, 124, 127, 130, 133, 338, 351
Bme1390I CCNGG 4 cut(s) 284, 449, 576, 606
Bme18I GGWCC 4 cut(s) 190, 471, 521, 602
BmeT110I CYCGRG 1 cut(s) 661
BmiI GGNNCC 5 cut(s) 162, 532, 533, 592, 593
BmrFI CCNGG 4 cut(s) 284, 449, 576, 606
BmrI ACTGGG 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 672
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 449, 576
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 4 cut(s) 270, 369, 605, 714
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 5 cut(s) 454, 569, 599, 630, 720
Bse118I RCCGGY 2 cut(s) 140, 339
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 2 cut(s) 284, 606
BseDI CCNNGG 4 cut(s) 270, 369, 605, 714
BseGI GGATG 6 cut(s) 279, 375, 615, 620, 639, 649
BseLI CCNNNNNNNGG 5 cut(s) 454, 569, 599, 630, 720
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 470, 477
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 4 cut(s) 79, 543, 546, 684
BseSI GKGCMC 2 cut(s) 534, 594
BseXI GCAGC 7 cut(s) 30, 109, 112, 113, 143, 323, 361
BseYI CCCAGC 4 cut(s) 97, 527, 594, 674
BsgI GTGCAG 3 cut(s) 27, 135, 528
Bsh1236I CGCG 2 cut(s) 183, 209
BshFI GGCC 7 cut(s) 10, 161, 326, 532, 574, 592, 705
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 4 cut(s) 141, 340, 448, 575
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 5 cut(s) 454, 569, 599, 630, 720
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 7 cut(s) 10, 161, 326, 532, 574, 592, 705
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 661
Bsp120I GGGCCC 2 cut(s) 530, 590
Bsp1286I GDGCHC 4 cut(s) 41, 423, 534, 594
Bsp143I GATC 5 cut(s) 145, 216, 502, 697, 727
Bsp68I TCGCGA 2 cut(s) 183, 209
BspACI CCGC 5 cut(s) 120, 129, 220, 563, 666
BspANI GGCC 7 cut(s) 10, 161, 326, 532, 574, 592, 705
BspCNI CTCAG 2 cut(s) 471, 478
BspFNI CGCG 2 cut(s) 183, 209
BspLI GGNNCC 5 cut(s) 162, 532, 533, 592, 593
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 5 cut(s) 140, 211, 510, 705, 722
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 2 cut(s) 140, 339
BsrI ACTGG 1 cut(s) 322
BssAI RCCGGY 2 cut(s) 140, 339
BssECI CCNNGG 4 cut(s) 270, 369, 605, 714
BssMI GATC 5 cut(s) 145, 216, 502, 697, 727
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 270, 714
Bst2UI CCWGG 2 cut(s) 284, 606
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 491
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 23, 27, 159, 185, 341
BstDEI CTNAG 3 cut(s) 479, 486, 738
BstF5I GGATG 6 cut(s) 279, 375, 615, 620, 639, 649
BstFNI CGCG 2 cut(s) 183, 209
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 2 cut(s) 336, 354
BstKTI GATC 5 cut(s) 148, 219, 505, 700, 730
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 5 cut(s) 145, 216, 502, 697, 727
BstMWI GCNNNNNNNGC 9 cut(s) 98, 125, 128, 131, 137, 158, 340, 349, 571
BstNI CCWGG 2 cut(s) 284, 606
BstNSI RCATGY 2 cut(s) 29, 202
BstSCI CCNGG 4 cut(s) 282, 447, 574, 604
BstSLI GKGCMC 2 cut(s) 534, 594
BstUI CGCG 2 cut(s) 183, 209
BstV1I GCAGC 7 cut(s) 30, 109, 112, 113, 143, 323, 361
BstV2I GAAGAC 1 cut(s) 672
BsuRI GGCC 7 cut(s) 10, 161, 326, 532, 574, 592, 705
BtgZI GCGATG 1 cut(s) 401
BtsCI GGATG 6 cut(s) 279, 375, 615, 620, 639, 649
BtsI GCAGTG 2 cut(s) 363, 516
BtsIMutI CAGTG 3 cut(s) 315, 363, 516
BtuMI TCGCGA 2 cut(s) 183, 209
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 5 cut(s) 23, 27, 159, 185, 341
CfoI GCGC 2 cut(s) 336, 354
Cfr10I RCCGGY 2 cut(s) 140, 339
CseI GACGC 2 cut(s) 218, 275
Csp6I GTAC 1 cut(s) 301
CviAII CATG 5 cut(s) 26, 199, 248, 599, 625
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 479, 486, 738
DpnI GATC 5 cut(s) 147, 218, 504, 699, 729
DpnII GATC 5 cut(s) 145, 216, 502, 697, 727
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
EciI GGCGGA 1 cut(s) 681
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 270, 714
Eco24I GRGCYC 4 cut(s) 41, 423, 534, 594
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 4 cut(s) 190, 471, 521, 602
Eco47III AGCGCT 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 39
EcoO109I RGGNCCY 3 cut(s) 8, 531, 591
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 2 cut(s) 282, 604
EcoT14I CCWWGG 2 cut(s) 270, 714
EcoT38I GRGCYC 4 cut(s) 41, 423, 534, 594
ErhI CCWWGG 2 cut(s) 270, 714
FaeI CATG 5 cut(s) 29, 202, 251, 602, 628
FaiI YATR 8 cut(s) 27, 200, 224, 249, 494, 570, 600, 626
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 65
FatI CATG 5 cut(s) 25, 198, 247, 598, 624
Fnu4HI GCNGC 9 cut(s) 19, 102, 120, 123, 126, 129, 132, 337, 350
FokI GGATG 6 cut(s) 266, 362, 607, 622, 646, 656
FriOI GRGCYC 4 cut(s) 41, 423, 534, 594
Fsp4HI GCNGC 9 cut(s) 19, 102, 120, 123, 126, 129, 132, 337, 350
FspBI CTAG 1 cut(s) 15
GlaI GCGC 2 cut(s) 335, 353
GluI GCNGC 9 cut(s) 19, 102, 120, 123, 126, 129, 132, 337, 350
GsaI CCCAGC 4 cut(s) 101, 531, 598, 678
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 7 cut(s) 10, 161, 326, 532, 574, 592, 705
HapII CCGG 4 cut(s) 141, 340, 448, 575
HgaI GACGC 2 cut(s) 218, 275
HhaI GCGC 2 cut(s) 336, 354
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 29, 202, 251, 602, 628
Hin6I GCGC 2 cut(s) 334, 352
HinP1I GCGC 2 cut(s) 334, 352
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 1 cut(s) 452
HpaII CCGG 4 cut(s) 141, 340, 448, 575
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 52, 474
Hpy188I TCNGA 5 cut(s) 61, 262, 298, 457, 480
Hpy188III TCNNGA 3 cut(s) 182, 208, 439
Hpy8I GTNNAC 2 cut(s) 52, 474
Hpy99I CGWCG 3 cut(s) 234, 269, 419
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 213, 414
HpyCH4V TGCA 5 cut(s) 29, 44, 152, 251, 509
HpyF10VI GCNNNNNNNGC 9 cut(s) 98, 125, 128, 131, 137, 158, 340, 349, 571
HpyF3I CTNAG 3 cut(s) 479, 486, 738
HpySE526I ACGT 2 cut(s) 213, 414
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 29, 202, 251, 602, 628
HspAI GCGC 2 cut(s) 334, 352
KroI GCCGGC 1 cut(s) 339
KroNI GCCGGC 1 cut(s) 341
Kzo9I GATC 5 cut(s) 145, 216, 502, 697, 727
LmnI GCTCC 2 cut(s) 66, 671
Lsp1109I GCAGC 7 cut(s) 30, 109, 112, 113, 143, 323, 361
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 213, 414
MaeIII GTNAC 1 cut(s) 361
MalI GATC 5 cut(s) 147, 218, 504, 699, 729
MboI GATC 5 cut(s) 145, 216, 502, 697, 727
MboII GAAGA 3 cut(s) 508, 672, 675
MhlI GDGCHC 4 cut(s) 41, 423, 534, 594
MluCI AATT 1 cut(s) 709
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 435
MroNI GCCGGC 1 cut(s) 339
MspA1I CMGCKG 2 cut(s) 122, 157
MspI CCGG 4 cut(s) 141, 340, 448, 575
MspR9I CCNGG 4 cut(s) 284, 449, 576, 606
MvaI CCWGG 2 cut(s) 284, 606
MvnI CGCG 2 cut(s) 183, 209
MwoI GCNNNNNNNGC 9 cut(s) 98, 125, 128, 131, 137, 158, 340, 349, 571
NaeI GCCGGC 1 cut(s) 341
NciI CCSGG 2 cut(s) 449, 576
NdeII GATC 5 cut(s) 145, 216, 502, 697, 727
NgoMIV GCCGGC 1 cut(s) 339
NlaIII CATG 5 cut(s) 29, 202, 251, 602, 628
NlaIV GGNNCC 5 cut(s) 162, 532, 533, 592, 593
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 361
NruI TCGCGA 2 cut(s) 183, 209
NspI RCATGY 2 cut(s) 29, 202
PaeI GCATGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PdiI GCCGGC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 9 cut(s) 20, 103, 121, 124, 127, 130, 133, 338, 351
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 282, 604
PspFI CCCAGC 4 cut(s) 97, 527, 594, 674
PspGI CCWGG 2 cut(s) 282, 604
PspN4I GGNNCC 5 cut(s) 162, 532, 533, 592, 593
PspOMI GGGCCC 2 cut(s) 530, 590
PvuII CAGCTG 1 cut(s) 157
RruI TCGCGA 2 cut(s) 183, 209
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SacI GAGCTC 1 cut(s) 41
SatI GCNGC 9 cut(s) 19, 102, 120, 123, 126, 129, 132, 337, 350
Sau3AI GATC 5 cut(s) 145, 216, 502, 697, 727
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 4 cut(s) 284, 449, 576, 606
SduI GDGCHC 4 cut(s) 41, 423, 534, 594
SetI ASST 9 cut(s) 41, 159, 216, 399, 417, 473, 487, 526, 676
SgrAI CRCCGGYG 1 cut(s) 140
SinI GGWCC 4 cut(s) 190, 471, 521, 602
SphI GCATGC 1 cut(s) 29
Sse9I AATT 1 cut(s) 709
SsiI CCGC 5 cut(s) 120, 129, 220, 563, 666
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 282, 447, 574, 604
StyI CCWWGG 2 cut(s) 270, 714
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 2 cut(s) 216, 417
TaqI TCGA 4 cut(s) 35, 405, 417, 615
TasI AATT 1 cut(s) 709
TatI WGTACW 1 cut(s) 300
TauI GCSGC 2 cut(s) 122, 131
TscAI CASTG 3 cut(s) 322, 370, 516
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 7 cut(s) 18, 101, 122, 125, 131, 336, 349
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 301, 509
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 3 cut(s) 322, 370, 516
VpaK11BI GGWCC 4 cut(s) 190, 471, 521, 602
XapI RAATTY 1 cut(s) 709
XceI RCATGY 2 cut(s) 29, 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.