Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Forward (+)

51134630 .. 51136514

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGACCCTGTGAGTGGCCTCGATCGCTTTCGCAGCAACAACAACAACAGGCAGGAAAAATCAACCACCGCCTCGGACCCAGCGCAGGTCACTGATGCCGTTAACGTTAACGGCGGCAACAACTCGGAAGCTGCAATTCCTCGTCTGCCTGTGGCGCCGTGCATGGTCCGTGAACAGGACCAGTACATGCCTATTGCTAATGTGATACGCATAATGCGGAGGATATTGCCGCCCCATGCAAAGATCTCCGATGACGCAAAAGAGACGGTCCAGGAGTGCGTGTCGGAGTACATCAGCTTTATCACAGGAGAGGCCAACGAGCGGTGCCAGCGGGAGCAGCGCAAGACTGTGACGGCTGAGGATGTGCTGTGGGCAATGAGCAAGCTAGGGTTCGACAACTACATCGAGCCCCTCAGTCTTTTCCTGAGCAAGTATAGGGAGGCTGAGGGCACTGAGCGCAGTTCATCCCTGTTTGCAAAGTGTGAGAGGGGAGATGGCGGGATGGTTGAATATGCGCCGGTGCTCGGGCATTATGGGCCACCTGGGTTTGGTCTGGCGGCCCAGCAGCCCTGGATGTATAAGGCTGGGGCGATGATGAGTGGGTACTATGGTGGGGCGGGTGGTAGTGGCAATGAAGGTGGTGGAGCTGGATCATCTTCTGCGTCCCAGAGACAGGGACAGAGTGCTATGGGTGGTGGGTTTGACCCTTTTGCTCAGTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

241

Amino Acids

26.03

Weight (kDa)

5.36

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	63 - 126	4.1e-25	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccB1I	GGYRCC	2 cut(s)	154, 324
AccBSI	CCGCTC	1 cut(s)	322
AciI	CCGC	9 cut(s)	69, 114, 217, 230, 322, 331, 498, 557, 617
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	185, 290, 605
AfiI	CCNNNNNNNGG	7 cut(s)	14, 85, 175, 321, 524, 548, 673
AgsI	TTSAA	1 cut(s)	509
AjnI	CCWGG	3 cut(s)	270, 541, 569
AluBI	AGCT	4 cut(s)	131, 297, 385, 647
AluI	AGCT	4 cut(s)	131, 297, 385, 647
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	2 cut(s)	257, 664
AlwI	GGATC	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	4 cut(s)	16, 312, 536, 558
ApeKI	GCWGC	4 cut(s)	33, 131, 337, 565
AspLEI	GCGC	5 cut(s)	85, 157, 342, 459, 517
AspS9I	GGNCC	7 cut(s)	4, 76, 166, 178, 268, 536, 559
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	5 cut(s)	4, 76, 166, 178, 268
BaeGI	GKGCMC	1 cut(s)	452
BaeI	ACNNNNGTAYC	2 cut(s)	595, 628
BanI	GGYRCC	2 cut(s)	154, 324
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	525
BbvCI	CCTCAGC	2 cut(s)	357, 444
BbvI	GCAGC	4 cut(s)	45, 118, 349, 577
BccI	CCATC	2 cut(s)	488, 496
BceAI	ACGGC	4 cut(s)	83, 127, 142, 369
BciT130I	CCWGG	3 cut(s)	272, 543, 571
BcoDI	GTCTC	2 cut(s)	257, 664
BfaI	CTAG	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	7 cut(s)	34, 115, 132, 230, 338, 558, 566
BlsI	GCNGC	7 cut(s)	35, 116, 133, 231, 339, 559, 567
Bme1390I	CCNGG	3 cut(s)	272, 543, 571
Bme18I	GGWCC	5 cut(s)	4, 76, 166, 178, 268
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	7 cut(s)	4, 76, 166, 178, 268, 536, 559
BmiI	GGNNCC	4 cut(s)	6, 78, 156, 326
BmrFI	CCNGG	3 cut(s)	272, 543, 571
BmsI	GCATC	1 cut(s)	85
Bpu10I	CCTNAGC	3 cut(s)	357, 425, 444
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	72, 542, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 85, 175, 321, 524, 548, 673
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	2 cut(s)	381, 637
BseBI	CCWGG	3 cut(s)	272, 543, 571
BseDI	CCNNGG	3 cut(s)	72, 542, 569
BseGI	GGATG	4 cut(s)	367, 464, 507, 579
BseLI	CCNNNNNNNGG	7 cut(s)	14, 85, 175, 321, 524, 548, 673
BseMI	GCAATG	2 cut(s)	381, 637
BseMII	CTCAG	5 cut(s)	348, 416, 427, 435, 444
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	45, 118, 349, 577
BseYI	CCCAGC	3 cut(s)	79, 561, 584
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	4 cut(s)	18, 314, 538, 560
BshNI	GGYRCC	2 cut(s)	154, 324
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	2 cut(s)	649, 690
BslI	CCNNNNNNNGG	7 cut(s)	14, 85, 175, 321, 524, 548, 673
BsmAI	GTCTC	2 cut(s)	257, 664
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	2 cut(s)	649, 690
BsnI	GGCC	4 cut(s)	18, 314, 538, 560
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	411, 452, 525
Bsp143I	GATC	3 cut(s)	22, 243, 650
BspACI	CCGC	9 cut(s)	69, 114, 217, 230, 322, 331, 498, 557, 617
BspANI	GGCC	4 cut(s)	18, 314, 538, 560
BspCNI	CTCAG	5 cut(s)	349, 417, 426, 436, 445
BspLI	GGNNCC	4 cut(s)	6, 78, 156, 326
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	658
BspT107I	GGYRCC	2 cut(s)	154, 324
BsrBI	CCGCTC	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	381, 637
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	72, 542, 569
BssMI	GATC	3 cut(s)	22, 243, 650
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	3 cut(s)	272, 543, 571
Bst4CI	ACNGT	2 cut(s)	268, 349
BstACI	GRCGYC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	329, 383
BstDEI	CTNAG	6 cut(s)	357, 413, 425, 444, 453, 714
BstF5I	GGATG	4 cut(s)	367, 464, 507, 579
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	5 cut(s)	85, 157, 342, 459, 517
BstKTI	GATC	3 cut(s)	25, 246, 653
BstMAI	GTCTC	2 cut(s)	257, 664
BstMBI	GATC	3 cut(s)	22, 243, 650
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 33, 154, 328, 337, 456, 535
BstNI	CCWGG	3 cut(s)	272, 543, 571
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	270, 541, 569
BstSLI	GKGCMC	1 cut(s)	452
BstV1I	GCAGC	4 cut(s)	45, 118, 349, 577
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	4 cut(s)	18, 314, 538, 560
BtgZI	GCGATG	1 cut(s)	605
BtsCI	GGATG	4 cut(s)	367, 464, 507, 579
BtsIMutI	CAGTG	2 cut(s)	90, 450
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	329, 383
CfoI	GCGC	5 cut(s)	85, 157, 342, 459, 517
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	7 cut(s)	4, 76, 166, 178, 268, 536, 559
CseI	GACGC	2 cut(s)	263, 651
Csp6I	GTAC	3 cut(s)	184, 289, 604
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	3 cut(s)	163, 187, 236
CviQI	GTAC	3 cut(s)	184, 289, 604
DdeI	CTNAG	6 cut(s)	357, 413, 425, 444, 453, 714
DinI	GGCGCC	1 cut(s)	156
DpnI	GATC	3 cut(s)	24, 245, 652
DpnII	GATC	3 cut(s)	22, 243, 650
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	5 cut(s)	4, 76, 166, 178, 268
Eco88I	CYCGRG	1 cut(s)	524
EcoRII	CCWGG	3 cut(s)	270, 541, 569
EcoT38I	GRGCYC	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	3 cut(s)	166, 190, 239
FaqI	GGGAC	2 cut(s)	649, 690
FatI	CATG	3 cut(s)	162, 186, 235
FauI	CCCGC	3 cut(s)	324, 491, 610
Fnu4HI	GCNGC	7 cut(s)	34, 115, 132, 230, 338, 558, 566
FokI	GGATG	4 cut(s)	374, 451, 514, 586
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	7 cut(s)	34, 115, 132, 230, 338, 558, 566
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	5 cut(s)	84, 156, 341, 458, 516
GluI	GCNGC	7 cut(s)	34, 115, 132, 230, 338, 558, 566
GsaI	CCCAGC	3 cut(s)	83, 565, 588
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	4 cut(s)	18, 314, 538, 560
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	2 cut(s)	263, 651
HhaI	GCGC	5 cut(s)	85, 157, 342, 459, 517
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	166, 190, 239
Hin6I	GCGC	5 cut(s)	83, 155, 340, 457, 515
HinP1I	GCGC	5 cut(s)	83, 155, 340, 457, 515
HincII	GTYRAC	2 cut(s)	103, 109
HindII	GTYRAC	2 cut(s)	103, 109
HpaI	GTTAAC	2 cut(s)	103, 109
HpaII	CCGG	1 cut(s)	518
Hpy166II	GTNNAC	3 cut(s)	103, 109, 173
Hpy188I	TCNGA	4 cut(s)	76, 127, 250, 286
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	3 cut(s)	103, 109, 173
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	2 cut(s)	268, 349
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	134, 162, 239, 476
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 33, 154, 328, 337, 456, 535
HpyF3I	CTNAG	6 cut(s)	357, 413, 425, 444, 453, 714
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	166, 190, 239
HspAI	GCGC	5 cut(s)	83, 155, 340, 457, 515
KasI	GGCGCC	1 cut(s)	154
KspAI	GTTAAC	2 cut(s)	103, 109
Kzo9I	GATC	3 cut(s)	22, 243, 650
LmnI	GCTCC	2 cut(s)	334, 644
Lsp1109I	GCAGC	4 cut(s)	45, 118, 349, 577
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	88, 349
MalI	GATC	3 cut(s)	24, 245, 652
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	3 cut(s)	22, 243, 650
MboII	GAAGA	1 cut(s)	648
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	3 cut(s)	411, 452, 525
MluCI	AATT	1 cut(s)	135
Mly113I	GGCGCC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	264
MseI	TTAA	3 cut(s)	102, 108, 720
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	3 cut(s)	272, 543, 571
MvaI	CCWGG	3 cut(s)	272, 543, 571
MwoI	GCNNNNNNNGC	7 cut(s)	24, 33, 154, 328, 337, 456, 535
NarI	GGCGCC	1 cut(s)	155
NdeII	GATC	3 cut(s)	22, 243, 650
NlaIII	CATG	3 cut(s)	166, 190, 239
NlaIV	GGNNCC	4 cut(s)	6, 78, 156, 326
NmuCI	GTSAC	2 cut(s)	88, 349
NspI	RCATGY	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	7 cut(s)	35, 116, 133, 231, 339, 559, 567
Ple19I	CGATCG	1 cut(s)	25
PluTI	GGCGCC	1 cut(s)	158
Psp1406I	AACGTT	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	270, 541, 569
PspFI	CCCAGC	3 cut(s)	79, 561, 584
PspGI	CCWGG	3 cut(s)	270, 541, 569
PspN4I	GGNNCC	4 cut(s)	6, 78, 156, 326
PspPI	GGNCC	7 cut(s)	4, 76, 166, 178, 268, 536, 559
PsuI	RGATCY	1 cut(s)	243
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	3 cut(s)	185, 290, 605
RsaNI	GTAC	3 cut(s)	184, 289, 604
SaqAI	TTAA	3 cut(s)	102, 108, 720
SatI	GCNGC	7 cut(s)	34, 115, 132, 230, 338, 558, 566
Sau3AI	GATC	3 cut(s)	22, 243, 650
Sau96I	GGNCC	7 cut(s)	4, 76, 166, 178, 268, 536, 559
ScrFI	CCNGG	3 cut(s)	272, 543, 571
SduI	GDGCHC	3 cut(s)	411, 452, 525
SetI	ASST	8 cut(s)	90, 108, 133, 299, 387, 544, 640, 649
SfaNI	GCATC	1 cut(s)	85
SfoI	GGCGCC	1 cut(s)	156
SgrAI	CRCCGGYG	1 cut(s)	517
SinI	GGWCC	5 cut(s)	4, 76, 166, 178, 268
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	9 cut(s)	69, 114, 217, 230, 322, 331, 498, 557, 617
SspDI	GGCGCC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	270, 541, 569
TaaI	ACNGT	2 cut(s)	268, 349
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	21, 393, 405
TasI	AATT	1 cut(s)	135
TatI	WGTACW	2 cut(s)	183, 288
TauI	GCSGC	3 cut(s)	117, 232, 560
Tru1I	TTAA	3 cut(s)	102, 108, 720
Tru9I	TTAA	3 cut(s)	102, 108, 720
TscAI	CASTG	2 cut(s)	97, 457
TseFI	GTSAC	2 cut(s)	88, 349
TseI	GCWGC	4 cut(s)	33, 131, 337, 565
Tsp45I	GTSAC	2 cut(s)	88, 349
TspDTI	ATGAA	2 cut(s)	453, 648
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	97, 457
VpaK11BI	GGWCC	5 cut(s)	4, 76, 166, 178, 268
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.