Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Reverse (-)

17939911 .. 17940645

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1191900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGTACCAAAACCAGCACGGAACCAGGCAGTCGGGTGGTCCTCAACGATCTTCACAGATGCTTCTCCAATCTTCCGGAGGGTACCACCCAGGTCCTGTAATGGATCCGTTCCCCGGCAATAGCGACAACAACACTGAACAGAGGGCCCCGCAGTGCCTCGTTCGCGAGCAGGATCGATACATGCCGATAGCCAACGTGATACGCATAATGCGGAGGATATTACCCCCGCATGCAAAAATATCTGACGACGCCAAGGAGACCATGCAGGAGTGTGTGTCCGAGTACATCGCCTTCATAACCGGCGAGGCCAACGAGCGCTGCCAGCCCGAGCAGCGCAAGACTGTCACTGCTGAGGATGTCCTCTGGGCCATGGGAAAGCTCGGGTTTGACAACTACGTCGAACCCCTCACCATTTACCTGCAACGCTACCGGGAGTCCGAGAGTTCCGACCGCTCTCAGTTTGTGAAGAGGGAGGAGCGCCAGCTGATGGACTATTGCCCTCCTGGGCATGCTGGGCCCCAGGTTGCAATGATGCCTCCCCCGCCACCATCTTATGGACCGGGATATTATTTCGGGCCCCAGCATGGTCTTCCCATGTATGACCCCTCGATGATGGGAATGTTTAGGGATGGTTCCTCCTCTGGTGCTGGTGGAGGCGGGTCATCGTCGGCTTCTGGGGTGCAGGGTGAGAACTCGTTGGGGGGATTTGACCCGTTTGGTGACTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

245

Amino Acids

27.02

Weight (kDa)

5.27

Isoelectric Point (pI)

64.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	47 - 125	8.6e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	61 - 125	1.9e-24	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	429
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AccB7I	CCANNNNNTGG	2 cut(s)	490, 557
AccBSI	CCGCTC	1 cut(s)	456
AccII	CGCG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	6 cut(s)	152, 214, 230, 454, 545, 660
AclWI	GGATC	3 cut(s)	101, 114, 183
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	8, 86, 287
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	116, 490, 557, 587
AgsI	TTSAA	1 cut(s)	730
AjnI	CCWGG	4 cut(s)	26, 91, 505, 522
AluBI	AGCT	2 cut(s)	382, 487
AluI	AGCT	2 cut(s)	382, 487
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	101, 114, 183
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	2 cut(s)	329, 383
Aor13HI	TCCGGA	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	5 cut(s)	147, 309, 369, 518, 578
ApaI	GGGCCC	3 cut(s)	151, 522, 582
ApeKI	GCWGC	2 cut(s)	321, 334
Asp718I	GGTACC	1 cut(s)	84
AspLEI	GCGC	3 cut(s)	321, 339, 483
AsuC2I	CCSGG	3 cut(s)	117, 434, 564
AsuHPI	GGTGA	3 cut(s)	403, 701, 734
AvaI	CYCGRG	2 cut(s)	329, 383
AvaII	GGWCC	3 cut(s)	41, 95, 560
BaeGI	GKGCMC	3 cut(s)	151, 522, 582
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	3 cut(s)	151, 522, 582
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	1 cut(s)	584
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	308, 346
BccI	CCATC	4 cut(s)	484, 559, 610, 626
BciT130I	CCWGG	4 cut(s)	28, 93, 507, 524
BcnI	CCSGG	3 cut(s)	117, 434, 564
BcoDI	GTCTC	1 cut(s)	254
BfoI	RGCGCY	2 cut(s)	322, 484
BfuAI	ACCTGC	1 cut(s)	429
BisI	GCNGC	2 cut(s)	322, 335
BlsI	GCNGC	2 cut(s)	323, 336
Bme1390I	CCNGG	7 cut(s)	28, 93, 117, 434, 507, 524, 564
Bme18I	GGWCC	3 cut(s)	41, 95, 560
BmeT110I	CYCGRG	2 cut(s)	329, 383
BmrFI	CCNGG	7 cut(s)	28, 93, 117, 434, 507, 524, 564
BmsI	GCATC	2 cut(s)	51, 525
BpiI	GAAGAC	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	354
BpuMI	CCSGG	3 cut(s)	117, 434, 564
Bsa29I	ATCGAT	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	6 cut(s)	91, 115, 255, 372, 506, 522
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 490, 557, 587
Bse118I	RCCGGY	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	4 cut(s)	28, 93, 507, 524
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	6 cut(s)	91, 115, 255, 372, 506, 522
BseGI	GGATG	2 cut(s)	364, 637
BseLI	CCNNNNNNNGG	4 cut(s)	116, 490, 557, 587
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	345, 473
BseRI	GAGGAG	2 cut(s)	491, 631
BseSI	GKGCMC	3 cut(s)	151, 522, 582
BseXI	GCAGC	2 cut(s)	308, 346
BseYI	CCCAGC	2 cut(s)	515, 582
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	5 cut(s)	149, 311, 371, 520, 580
BshNI	GGYRCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	454
BsiHKCI	CYCGRG	2 cut(s)	329, 383
BsiSI	CCGG	5 cut(s)	78, 117, 303, 433, 563
BslI	CCNNNNNNNGG	4 cut(s)	116, 490, 557, 587
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	149, 311, 371, 520, 580
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	2 cut(s)	329, 383
Bsp120I	GGGCCC	3 cut(s)	147, 518, 578
Bsp1286I	GDGCHC	3 cut(s)	151, 522, 582
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	50, 106, 175
Bsp19I	CCATGG	1 cut(s)	372
Bsp68I	TCGCGA	1 cut(s)	168
BspACI	CCGC	6 cut(s)	152, 214, 230, 454, 545, 660
BspANI	GGCC	5 cut(s)	149, 311, 371, 520, 580
BspCNI	CTCAG	2 cut(s)	346, 472
BspDI	ATCGAT	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	3 cut(s)	101, 114, 183
BspT107I	GGYRCC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	6 cut(s)	91, 115, 255, 372, 506, 522
BssMI	GATC	3 cut(s)	50, 106, 175
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	255, 372
Bst2UI	CCWGG	4 cut(s)	28, 93, 507, 524
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	5 cut(s)	170, 234, 326, 485, 513
BstDEI	CTNAG	2 cut(s)	354, 459
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	364, 637
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	2 cut(s)	322, 484
BstHHI	GCGC	3 cut(s)	321, 339, 483
BstKTI	GATC	3 cut(s)	53, 109, 178
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	50, 106, 175
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 325, 334, 517, 544
BstNI	CCWGG	4 cut(s)	28, 93, 507, 524
BstNSI	RCATGY	3 cut(s)	187, 236, 515
BstSCI	CCNGG	7 cut(s)	26, 91, 115, 432, 505, 522, 562
BstSLI	GKGCMC	3 cut(s)	151, 522, 582
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	308, 346
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	178
BsuRI	GGCC	5 cut(s)	149, 311, 371, 520, 580
BsuTUI	ATCGAT	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	364, 637
BtsI	GCAGTG	2 cut(s)	161, 348
BtsIMutI	CAGTG	3 cut(s)	135, 161, 348
BtuMI	TCGCGA	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	5 cut(s)	170, 234, 326, 485, 513
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	3 cut(s)	321, 339, 483
Cfr10I	RCCGGY	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	178
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	7, 85, 286
CviAII	CATG	7 cut(s)	184, 233, 265, 373, 512, 587, 598
CviQI	GTAC	3 cut(s)	7, 85, 286
DdeI	CTNAG	2 cut(s)	354, 459
DpnI	GATC	3 cut(s)	52, 108, 177
DpnII	GATC	3 cut(s)	50, 106, 175
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	255, 372
Eco24I	GRGCYC	3 cut(s)	151, 522, 582
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	3 cut(s)	41, 95, 560
Eco47III	AGCGCT	1 cut(s)	320
Eco88I	CYCGRG	2 cut(s)	329, 383
EcoO109I	RGGNCCY	5 cut(s)	95, 147, 148, 519, 579
EcoRII	CCWGG	4 cut(s)	26, 91, 505, 522
EcoT14I	CCWWGG	2 cut(s)	255, 372
EcoT38I	GRGCYC	3 cut(s)	151, 522, 582
ErhI	CCWWGG	2 cut(s)	255, 372
FaeI	CATG	7 cut(s)	187, 236, 268, 376, 515, 590, 601
FatI	CATG	7 cut(s)	183, 232, 264, 372, 511, 586, 597
FauI	CCCGC	4 cut(s)	159, 237, 552, 653
Fnu4HI	GCNGC	2 cut(s)	322, 335
FokI	GGATG	2 cut(s)	371, 644
FriOI	GRGCYC	3 cut(s)	151, 522, 582
Fsp4HI	GCNGC	2 cut(s)	322, 335
GlaI	GCGC	3 cut(s)	320, 338, 482
GluI	GCNGC	2 cut(s)	322, 335
GsaI	CCCAGC	2 cut(s)	519, 586
HaeII	RGCGCY	2 cut(s)	322, 484
HaeIII	GGCC	5 cut(s)	149, 311, 371, 520, 580
HapII	CCGG	5 cut(s)	78, 117, 303, 433, 563
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	3 cut(s)	321, 339, 483
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	7 cut(s)	187, 236, 268, 376, 515, 590, 601
Hin6I	GCGC	3 cut(s)	319, 337, 481
HinP1I	GCGC	3 cut(s)	319, 337, 481
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	5 cut(s)	78, 117, 303, 433, 563
HphI	GGTGA	3 cut(s)	403, 701, 734
Hpy188I	TCNGA	4 cut(s)	247, 283, 442, 451
Hpy188III	TCNNGA	2 cut(s)	78, 167
Hpy99I	CGWCG	3 cut(s)	254, 404, 673
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	198, 399
HpyCH4V	TGCA	5 cut(s)	236, 268, 424, 530, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 325, 334, 517, 544
HpyF3I	CTNAG	2 cut(s)	354, 459
HpySE526I	ACGT	2 cut(s)	198, 399
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	7 cut(s)	187, 236, 268, 376, 515, 590, 601
HspAI	GCGC	3 cut(s)	319, 337, 481
Kpn2I	TCCGGA	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	50, 106, 175
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	2 cut(s)	308, 346
LweI	GCATC	2 cut(s)	51, 525
MaeII	ACGT	2 cut(s)	198, 399
MaeIII	GTNAC	2 cut(s)	346, 722
MalI	GATC	3 cut(s)	52, 108, 177
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	3 cut(s)	50, 106, 175
MboII	GAAGA	4 cut(s)	45, 66, 481, 584
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	3 cut(s)	151, 522, 582
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	5 cut(s)	78, 117, 303, 433, 563
MspR9I	CCNGG	7 cut(s)	28, 93, 117, 434, 507, 524, 564
MvaI	CCWGG	4 cut(s)	28, 93, 507, 524
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	5 cut(s)	165, 325, 334, 517, 544
NciI	CCSGG	3 cut(s)	117, 434, 564
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	50, 106, 175
NlaIII	CATG	7 cut(s)	187, 236, 268, 376, 515, 590, 601
NmuCI	GTSAC	2 cut(s)	346, 722
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	3 cut(s)	187, 236, 515
PaeI	GCATGC	2 cut(s)	236, 515
PflMI	CCANNNNNTGG	2 cut(s)	490, 557
PkrI	GCNGC	2 cut(s)	323, 336
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	4 cut(s)	26, 91, 505, 522
PspFI	CCCAGC	2 cut(s)	515, 582
PspGI	CCWGG	4 cut(s)	26, 91, 505, 522
PspOMI	GGGCCC	3 cut(s)	147, 518, 578
PspPPI	RGGWCCY	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	487
RruI	TCGCGA	1 cut(s)	168
RsaI	GTAC	3 cut(s)	8, 86, 287
RsaNI	GTAC	3 cut(s)	7, 85, 286
SatI	GCNGC	2 cut(s)	322, 335
Sau3AI	GATC	3 cut(s)	50, 106, 175
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	7 cut(s)	28, 93, 117, 434, 507, 524, 564
SduI	GDGCHC	3 cut(s)	151, 522, 582
SetI	ASST	7 cut(s)	97, 201, 384, 402, 423, 489, 528
SfaNI	GCATC	2 cut(s)	51, 525
SinI	GGWCC	3 cut(s)	41, 95, 560
SphI	GCATGC	2 cut(s)	236, 515
SsiI	CCGC	6 cut(s)	152, 214, 230, 454, 545, 660
StyD4I	CCNGG	7 cut(s)	26, 91, 115, 432, 505, 522, 562
StyI	CCWWGG	2 cut(s)	255, 372
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	201, 402
TaqI	TCGA	3 cut(s)	178, 402, 611
TatI	WGTACW	1 cut(s)	285
TscAI	CASTG	3 cut(s)	142, 161, 355
TseFI	GTSAC	2 cut(s)	346, 722
TseI	GCWGC	2 cut(s)	321, 334
Tsp45I	GTSAC	2 cut(s)	346, 722
TspDTI	ATGAA	1 cut(s)	286
TspGWI	ACGGA	2 cut(s)	36, 99
TspRI	CASTG	3 cut(s)	142, 161, 355
Van91I	CCANNNNNTGG	2 cut(s)	490, 557
VpaK11BI	GGWCC	3 cut(s)	41, 95, 560
XceI	RCATGY	3 cut(s)	187, 236, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.