Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Forward (+)

55937668 .. 55938234

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTCCGTGAACAGGACCAGTACATGCCTATTGCTAATGTGATACGCATAATGCGGAGGATATTGCCGCCCCATGCAAAGATCTCCGACGACGCAAAAGAGACGGTCCAGGAATGCGTGTCGGAGTACATCAGCTTTATCACCGGAGAGGCCAACGAGCGGTGCCAGCGGGAGCAGCGCAAGACTGTGACGGCTGAGGATGTGCTGTGGGCAATGAGCAAGCTAGGGTTCGACAACTACATCGAGCCCCTCAGTCTTTTCCTGAGCAAGTATAGGGAGGCTGAGGGCACTGAGCGCAGTTCATCCCTGTTTGCAAAGTGTGAGAGGGGAGATGGCGGGATGGTTGAATATGCGCCCGTGCTCGGGCATTATGGGCCACCTGGGTTTGGTCTGGCGGCCCAGCAGCCCGGGATGTATAAGGCTGGGGCGATGAGTGGTTACTATATAGGTGGGGCGGGTGGTAGTGGCAATGAAGGTGGTGGAGCTGGATCATCTTCTGCGTCCCAGCAGAGACAGGGACAGAGTGCTATGGGTGGTGGGTTTGACCCTTTTGCTCAGTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

188

Amino Acids

20.33

Weight (kDa)

5.49

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	8 - 72	2.5e-25	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	7 cut(s)	55, 68, 160, 169, 336, 395, 455
AclWI	GGATC	1 cut(s)	496
AfaI	GTAC	2 cut(s)	23, 128
AfiI	CCNNNNNNNGG	5 cut(s)	13, 159, 362, 363, 386
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	108, 379
AluBI	AGCT	3 cut(s)	135, 223, 485
AluI	AGCT	3 cut(s)	135, 223, 485
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	95, 505
AlwI	GGATC	1 cut(s)	496
Ama87I	CYCGRG	2 cut(s)	362, 407
AoxI	GGCC	3 cut(s)	150, 374, 396
ApeKI	GCWGC	2 cut(s)	175, 403
AspLEI	GCGC	3 cut(s)	180, 297, 355
AspS9I	GGNCC	5 cut(s)	4, 16, 106, 374, 397
AsuC2I	CCSGG	2 cut(s)	408, 409
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	2 cut(s)	362, 407
AvaII	GGWCC	3 cut(s)	4, 16, 106
BaeGI	GKGCMC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	2 cut(s)	195, 282
BbvI	GCAGC	2 cut(s)	187, 415
BccI	CCATC	2 cut(s)	326, 334
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	2 cut(s)	110, 381
BcnI	CCSGG	2 cut(s)	408, 409
BcoDI	GTCTC	2 cut(s)	95, 505
BfaI	CTAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	4 cut(s)	68, 176, 396, 404
BlsI	GCNGC	4 cut(s)	69, 177, 397, 405
Bme1390I	CCNGG	4 cut(s)	110, 381, 408, 409
Bme18I	GGWCC	3 cut(s)	4, 16, 106
BmeT110I	CYCGRG	2 cut(s)	362, 407
BmgT120I	GGNCC	5 cut(s)	4, 16, 106, 374, 397
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	4 cut(s)	110, 381, 408, 409
Bpu10I	CCTNAGC	3 cut(s)	195, 263, 282
BpuMI	CCSGG	2 cut(s)	408, 409
BsaJI	CCNNGG	2 cut(s)	380, 407
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 159, 362, 363, 386
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	2 cut(s)	219, 475
BseBI	CCWGG	2 cut(s)	110, 381
BseDI	CCNNGG	2 cut(s)	380, 407
BseGI	GGATG	4 cut(s)	205, 302, 345, 417
BseLI	CCNNNNNNNGG	5 cut(s)	13, 159, 362, 363, 386
BseMI	GCAATG	2 cut(s)	219, 475
BseMII	CTCAG	5 cut(s)	186, 254, 265, 273, 282
BseNI	ACTGG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	187, 415
BseYI	CCCAGC	3 cut(s)	399, 422, 504
BshFI	GGCC	3 cut(s)	152, 376, 398
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	2 cut(s)	362, 407
BsiSI	CCGG	2 cut(s)	144, 408
BslFI	GGGAC	2 cut(s)	487, 531
BslI	CCNNNNNNNGG	5 cut(s)	13, 159, 362, 363, 386
BsmAI	GTCTC	2 cut(s)	95, 505
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	487, 531
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	152, 376, 398
BsoBI	CYCGRG	2 cut(s)	362, 407
Bsp1286I	GDGCHC	3 cut(s)	249, 290, 363
Bsp143I	GATC	2 cut(s)	81, 488
BspACI	CCGC	7 cut(s)	55, 68, 160, 169, 336, 395, 455
BspANI	GGCC	3 cut(s)	152, 376, 398
BspCNI	CTCAG	5 cut(s)	187, 255, 264, 274, 283
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	219, 475
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	380, 407
BssMI	GATC	2 cut(s)	81, 488
Bst2UI	CCWGG	2 cut(s)	110, 381
Bst4CI	ACNGT	2 cut(s)	106, 187
BstC8I	GCNNGC	2 cut(s)	167, 221
BstDEI	CTNAG	6 cut(s)	195, 251, 263, 282, 291, 555
BstF5I	GGATG	4 cut(s)	205, 302, 345, 417
BstHHI	GCGC	3 cut(s)	180, 297, 355
BstKTI	GATC	2 cut(s)	84, 491
BstMAI	GTCTC	2 cut(s)	95, 505
BstMBI	GATC	2 cut(s)	81, 488
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 175, 294, 373
BstNI	CCWGG	2 cut(s)	110, 381
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	4 cut(s)	108, 379, 406, 407
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	187, 415
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	152, 376, 398
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	4 cut(s)	205, 302, 345, 417
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	167, 221
CfoI	GCGC	3 cut(s)	180, 297, 355
Cfr13I	GGNCC	5 cut(s)	4, 16, 106, 374, 397
Cfr9I	CCCGGG	1 cut(s)	407
CseI	GACGC	2 cut(s)	101, 489
Csp6I	GTAC	2 cut(s)	22, 127
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	2 cut(s)	25, 74
CviQI	GTAC	2 cut(s)	22, 127
DdeI	CTNAG	6 cut(s)	195, 251, 263, 282, 291, 555
DpnI	GATC	2 cut(s)	83, 490
DpnII	GATC	2 cut(s)	81, 488
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	3 cut(s)	4, 16, 106
Eco88I	CYCGRG	2 cut(s)	362, 407
EcoRII	CCWGG	2 cut(s)	108, 379
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	28, 77
FaqI	GGGAC	2 cut(s)	487, 531
FatI	CATG	2 cut(s)	24, 73
FauI	CCCGC	3 cut(s)	162, 329, 448
Fnu4HI	GCNGC	4 cut(s)	68, 176, 396, 404
FokI	GGATG	4 cut(s)	212, 289, 352, 424
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	68, 176, 396, 404
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	3 cut(s)	179, 296, 354
GluI	GCNGC	4 cut(s)	68, 176, 396, 404
GsaI	CCCAGC	3 cut(s)	403, 426, 508
HaeIII	GGCC	3 cut(s)	152, 376, 398
HapII	CCGG	2 cut(s)	144, 408
HgaI	GACGC	2 cut(s)	101, 489
HhaI	GCGC	3 cut(s)	180, 297, 355
Hin1II	CATG	2 cut(s)	28, 77
Hin6I	GCGC	3 cut(s)	178, 295, 353
HinP1I	GCGC	3 cut(s)	178, 295, 353
HpaII	CCGG	2 cut(s)	144, 408
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	88, 124
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	106, 187
HpyCH4V	TGCA	2 cut(s)	77, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 175, 294, 373
HpyF3I	CTNAG	6 cut(s)	195, 251, 263, 282, 291, 555
Hsp92II	CATG	2 cut(s)	28, 77
HspAI	GCGC	3 cut(s)	178, 295, 353
Kzo9I	GATC	2 cut(s)	81, 488
LmnI	GCTCC	2 cut(s)	172, 482
Lsp1109I	GCAGC	2 cut(s)	187, 415
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	187, 437
MalI	GATC	2 cut(s)	83, 490
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	2 cut(s)	81, 488
MboII	GAAGA	1 cut(s)	486
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	3 cut(s)	249, 290, 363
MmeI	TCCRAC	2 cut(s)	102, 111
MnlI	CCTC	7 cut(s)	51, 142, 190, 260, 271, 277, 318
MseI	TTAA	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	2 cut(s)	144, 408
MspR9I	CCNGG	4 cut(s)	110, 381, 408, 409
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	110, 381
MwoI	GCNNNNNNNGC	4 cut(s)	166, 175, 294, 373
NciI	CCSGG	2 cut(s)	408, 409
NdeII	GATC	2 cut(s)	81, 488
NlaIII	CATG	2 cut(s)	28, 77
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	28
PctI	GAATGC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	69, 177, 397, 405
Psp6I	CCWGG	2 cut(s)	108, 379
PspFI	CCCAGC	3 cut(s)	399, 422, 504
PspGI	CCWGG	2 cut(s)	108, 379
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	5 cut(s)	4, 16, 106, 374, 397
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	23, 128
RsaNI	GTAC	2 cut(s)	22, 127
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	4 cut(s)	68, 176, 396, 404
Sau3AI	GATC	2 cut(s)	81, 488
Sau96I	GGNCC	5 cut(s)	4, 16, 106, 374, 397
ScrFI	CCNGG	4 cut(s)	110, 381, 408, 409
SduI	GDGCHC	3 cut(s)	249, 290, 363
SetI	ASST	6 cut(s)	137, 225, 382, 451, 478, 487
SinI	GGWCC	3 cut(s)	4, 16, 106
SmaI	CCCGGG	1 cut(s)	409
SsiI	CCGC	7 cut(s)	55, 68, 160, 169, 336, 395, 455
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	4 cut(s)	108, 379, 406, 407
TaaI	ACNGT	2 cut(s)	106, 187
TaqI	TCGA	2 cut(s)	231, 243
TatI	WGTACW	2 cut(s)	21, 126
TauI	GCSGC	2 cut(s)	70, 398
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	175, 403
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	291, 486
TspMI	CCCGGG	1 cut(s)	407
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	3 cut(s)	4, 16, 106
XceI	RCATGY	1 cut(s)	28
XmaI	CCCGGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.