Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Forward (+)

19336068 .. 19336619

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCCGATAGCCAACGTGATACGCATAATGCGGAGGATATTACCCCCGCATGCAAAAATATCTGACGACGCCAAGGAGACTATGCAGGAGTGTGTGTCCGAGTACATCGCCTTCATAACCGGTGAGGCCAACGAGCGCTGCCAGCGCGAGCAGCGCAAGACTGTCACTGCTGAGGATGTCCTCTGGGCCATGGGAAAGCTCGGGTTTGACAACTACGTCGAACCCCTCACCATTTACCTCCAACGCTACCGGGAGTCTGAGAGTTCCGACCGCTCTCAGTTTGTGAAGAGGGAGGAGCGCCAGCCAACGGACTATTGCCCTCCTGGGCATGCTGTGCCCCAGGTTGCAATGATGTCTCCCCCGCCACCATCTTATGGGCCGGGATATTATTTCGGGCCCCAGCATGGTCCTCCCATGTATGACCCCTCGATGATGGGAATGTTTAGGGATGGTTCCTCCTCTGGTGCTGGTGGAGGCGGGTCATCGTCGGCTTCTGGGGCGCAGGGTGAGAACTCGTTGGGGCGATTTGACCCGTTTGATCACTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

184

Amino Acids

20.34

Weight (kDa)

5.38

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	1 - 64	7.9e-25	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccBSI	CCGCTC	1 cut(s)	273
AccII	CGCG	1 cut(s)	147
AciI	CCGC	5 cut(s)	31, 47, 271, 362, 477
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	104
AfeI	AGCGCT	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	307, 374, 404
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	547
AjnI	CCWGG	2 cut(s)	322, 339
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	71, 360
Ama87I	CYCGRG	1 cut(s)	200
Aor51HI	AGCGCT	1 cut(s)	137
AoxI	GGCC	4 cut(s)	126, 186, 377, 395
ApaI	GGGCCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	138, 151
AsiGI	ACCGGT	1 cut(s)	119
AspLEI	GCGC	5 cut(s)	138, 147, 156, 300, 502
AspS9I	GGNCC	5 cut(s)	186, 377, 395, 396, 407
AsuC2I	CCSGG	2 cut(s)	251, 381
AsuHPI	GGTGA	3 cut(s)	134, 220, 518
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	407
BaeGI	GKGCMC	2 cut(s)	339, 399
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	125, 163
BccI	CCATC	3 cut(s)	376, 427, 443
BciT130I	CCWGG	2 cut(s)	324, 341
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	2 cut(s)	251, 381
BcoDI	GTCTC	2 cut(s)	71, 360
BfoI	RGCGCY	2 cut(s)	139, 301
BisI	GCNGC	2 cut(s)	139, 152
BlsI	GCNGC	2 cut(s)	140, 153
Bme1390I	CCNGG	4 cut(s)	251, 324, 341, 381
Bme18I	GGWCC	1 cut(s)	407
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	5 cut(s)	186, 377, 395, 396, 407
BmiI	GGNNCC	3 cut(s)	397, 398, 454
BmrFI	CCNGG	4 cut(s)	251, 324, 341, 381
Bpu10I	CCTNAGC	1 cut(s)	171
BpuMI	CCSGG	2 cut(s)	251, 381
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	4 cut(s)	72, 189, 323, 339
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 374, 404
Bse118I	RCCGGY	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	324, 341
BseDI	CCNNGG	4 cut(s)	72, 189, 323, 339
BseGI	GGATG	2 cut(s)	181, 454
BseLI	CCNNNNNNNGG	3 cut(s)	307, 374, 404
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	162, 249, 290
BseRI	GAGGAG	2 cut(s)	308, 448
BseSI	GKGCMC	2 cut(s)	339, 399
BseXI	GCAGC	2 cut(s)	125, 163
BseYI	CCCAGC	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	4 cut(s)	128, 188, 379, 397
BshTI	ACCGGT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	120, 250, 380
BslI	CCNNNNNNNGG	3 cut(s)	307, 374, 404
BsmAI	GTCTC	2 cut(s)	71, 360
BsnI	GGCC	4 cut(s)	128, 188, 379, 397
BsoBI	CYCGRG	1 cut(s)	200
Bsp120I	GGGCCC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	339, 399
Bsp143I	GATC	1 cut(s)	538
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	5 cut(s)	31, 47, 271, 362, 477
BspANI	GGCC	4 cut(s)	128, 188, 379, 397
BspCNI	CTCAG	3 cut(s)	163, 250, 289
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	397, 398, 454
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	4 cut(s)	72, 189, 323, 339
BssMI	GATC	1 cut(s)	538
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	2 cut(s)	72, 189
Bst2UI	CCWGG	2 cut(s)	324, 341
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	5 cut(s)	51, 143, 149, 302, 330
BstDEI	CTNAG	3 cut(s)	171, 258, 276
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	181, 454
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	2 cut(s)	139, 301
BstHHI	GCGC	5 cut(s)	138, 147, 156, 300, 502
BstKTI	GATC	1 cut(s)	541
BstMAI	GTCTC	2 cut(s)	71, 360
BstMBI	GATC	1 cut(s)	538
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 144, 151, 153, 334, 497
BstNI	CCWGG	2 cut(s)	324, 341
BstNSI	RCATGY	2 cut(s)	53, 332
BstSCI	CCNGG	4 cut(s)	249, 322, 339, 379
BstSLI	GKGCMC	2 cut(s)	339, 399
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	125, 163
BsuRI	GGCC	4 cut(s)	128, 188, 379, 397
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	181, 454
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	5 cut(s)	51, 143, 149, 302, 330
CfoI	GCGC	5 cut(s)	138, 147, 156, 300, 502
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	5 cut(s)	186, 377, 395, 396, 407
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	103
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	5 cut(s)	50, 190, 329, 404, 415
CviJI	RGCY	8 cut(s)	11, 128, 188, 199, 304, 379, 397, 491
CviKI_1	RGCY	8 cut(s)	11, 128, 188, 199, 304, 379, 397, 491
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	171, 258, 276
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	72, 189
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	407
Eco47III	AGCGCT	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	322, 339
EcoT14I	CCWWGG	2 cut(s)	72, 189
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	2 cut(s)	72, 189
FaeI	CATG	5 cut(s)	53, 193, 332, 407, 418
FatI	CATG	5 cut(s)	49, 189, 328, 403, 414
FauI	CCCGC	3 cut(s)	54, 369, 470
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	139, 152
FokI	GGATG	2 cut(s)	188, 461
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	139, 152
GlaI	GCGC	5 cut(s)	137, 146, 155, 299, 501
GluI	GCNGC	2 cut(s)	139, 152
GsaI	CCCAGC	1 cut(s)	403
HaeII	RGCGCY	2 cut(s)	139, 301
HaeIII	GGCC	4 cut(s)	128, 188, 379, 397
HapII	CCGG	3 cut(s)	120, 250, 380
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	5 cut(s)	138, 147, 156, 300, 502
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	53, 193, 332, 407, 418
Hin6I	GCGC	5 cut(s)	136, 145, 154, 298, 500
HinP1I	GCGC	5 cut(s)	136, 145, 154, 298, 500
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	3 cut(s)	120, 250, 380
HphI	GGTGA	3 cut(s)	134, 220, 518
Hpy188I	TCNGA	4 cut(s)	64, 100, 259, 268
Hpy99I	CGWCG	3 cut(s)	71, 221, 490
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	2 cut(s)	15, 216
HpyCH4V	TGCA	3 cut(s)	53, 85, 347
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 144, 151, 153, 334, 497
HpyF3I	CTNAG	3 cut(s)	171, 258, 276
HpySE526I	ACGT	2 cut(s)	15, 216
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	53, 193, 332, 407, 418
HspAI	GCGC	5 cut(s)	136, 145, 154, 298, 500
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	1 cut(s)	538
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	125, 163
MaeII	ACGT	2 cut(s)	15, 216
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	540
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	1 cut(s)	538
MboII	GAAGA	1 cut(s)	298
MfeI	CAATTG	1 cut(s)	547
MhlI	GDGCHC	2 cut(s)	339, 399
MluCI	AATT	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	265, 291
MspI	CCGG	3 cut(s)	120, 250, 380
MspR9I	CCNGG	4 cut(s)	251, 324, 341, 381
MunI	CAATTG	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	324, 341
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	6 cut(s)	142, 144, 151, 153, 334, 497
NciI	CCSGG	2 cut(s)	251, 381
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	538
NlaIII	CATG	5 cut(s)	53, 193, 332, 407, 418
NlaIV	GGNNCC	3 cut(s)	397, 398, 454
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	2 cut(s)	53, 332
PaeI	GCATGC	2 cut(s)	53, 332
PflMI	CCANNNNNTGG	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	140, 153
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	322, 339
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	2 cut(s)	322, 339
PspN4I	GGNNCC	3 cut(s)	397, 398, 454
PspOMI	GGGCCC	1 cut(s)	395
PspPI	GGNCC	5 cut(s)	186, 377, 395, 396, 407
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	2 cut(s)	139, 152
Sau3AI	GATC	1 cut(s)	538
Sau96I	GGNCC	5 cut(s)	186, 377, 395, 396, 407
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	4 cut(s)	251, 324, 341, 381
SduI	GDGCHC	2 cut(s)	339, 399
SetI	ASST	5 cut(s)	18, 201, 219, 240, 345
SinI	GGWCC	1 cut(s)	407
SphI	GCATGC	2 cut(s)	53, 332
Sse9I	AATT	1 cut(s)	547
SsiI	CCGC	5 cut(s)	31, 47, 271, 362, 477
StyD4I	CCNGG	4 cut(s)	249, 322, 339, 379
StyI	CCWWGG	2 cut(s)	72, 189
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	2 cut(s)	18, 219
TaqI	TCGA	2 cut(s)	219, 428
TasI	AATT	1 cut(s)	547
TatI	WGTACW	1 cut(s)	102
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	138, 151
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	407
XceI	RCATGY	2 cut(s)	53, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.