Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012711

Physical Location & Seq

Genomic Coordinates Forward (+)

22305284 .. 22307319

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACCCTATGAATGACCTCGATCGTGTTTGCAACAACATCAACAACCATGAGAAATCAATCACTGCCTCAGAGTCAGACCCAAATCAGGTCATTGATACCAACAATCCCAACGAAGTTAACATTAGTAGGGGTAACAACGTAGAAGTGGTAAGTCCACGTCAACCTGTTCAAATTGTTCATGAACATAACCAATATATGCCAATTGCCAATGTGATACGCATAATGCGGAGGATATTACCACTCTATGCAAAAATTTCTGATGACGCCAAAGAGATTGTCCAAGAGTGTGTGTCAGAATATATTAGTTTCATCACTGGAGAGGCTAACGAGCATTGCCAGCAAGAGCAGCGCAAGACGGTGACTGCAGAGGATGTGTTGTGGGCAATGGGGAAGCTAGGGTTTGATGACTACATAGAGCCCCTCAGTCTTTTTCTAACGAAGTATAGGGAGGCTGAGGGAATCAACCGCAATTCCTTTTTCATGAAGCGTGAGAGGGGAGATGGCAGGAGGAAAGAGAATGCGATGCGCGGGCATTACAGGCCGCTTGGGCTTGCTCTAGCGGAACAACAACCTGGGGTGTATGAGCCGGGGGCGATGAGTGGGTCCTATAGAGATGGTGAGGAAGGTGGGAGTGGTAGCGGAGGGGTTGGACCTATCTCACCGTTTTTGTCCCAAGGACAGGGAGAAAGTTTTGTGGGTGGTGGCTTGGATCCTTTTGCTCAATTCAAGTTACAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0104004 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

248

Amino Acids

27.57

Weight (kDa)

5.02

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	67 - 130	7.7e-24	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21970
fragaria_vesca	FvH4_3g29180
malus_domestica	MD02G1191900.v1.1 MD02G1192100.v1.1 MD03G1179600.v1.1 MD11G1199300.v1.1
prunus_persica	Prupe.4G243500_v2.0.a1
pyrus_communis	pycom11g17230
rosa_chinensis	RchiOBHm_Chr5g0053481
rosa_laevigata	RLG00000034887
rosa_multiflora	Rmu_sc0005966.1_g000020
rosa_roxburghii	Rroxscaffold_1G00026930
rosa_rugosa	Rorug05G0280200
rosa_samantha	Rh5AG351500 Rh5BG363700 Rh5CG388100 Rh5DG378400
rosa_wichuraiana	Rw5G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	531
AciI	CCGC	6 cut(s)	229, 469, 531, 545, 563, 642
AclWI	GGATC	2 cut(s)	707, 720
AcsI	RAATTY	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	88, 682
AgsI	TTSAA	2 cut(s)	173, 730
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
AlwI	GGATC	2 cut(s)	707, 720
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	255
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AspLEI	GCGC	2 cut(s)	354, 531
AspS9I	GGNCC	3 cut(s)	4, 606, 653
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	3 cut(s)	373, 632, 654
AvaII	GGWCC	3 cut(s)	4, 606, 653
BamHI	GGATCC	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	497, 611
BciT130I	CCWGG	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	591
BfaI	CTAG	2 cut(s)	398, 560
BfmI	CTRYAG	2 cut(s)	366, 610
BglI	GCCNNNNNGGC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	350, 545
BlsI	GCNGC	2 cut(s)	351, 546
Bme1390I	CCNGG	2 cut(s)	576, 591
Bme18I	GGWCC	3 cut(s)	4, 606, 653
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	4, 606, 653
BmiI	GGNNCC	3 cut(s)	6, 607, 714
BmrFI	CCNGG	2 cut(s)	576, 591
BmsI	GCATC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	575, 590, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 682
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	334, 393
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	3 cut(s)	575, 590, 676
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	88, 682
BseMI	GCAATG	2 cut(s)	334, 393
BseMII	CTCAG	3 cut(s)	84, 439, 447
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	531
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	544
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	2 cut(s)	88, 682
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	22, 712
BspACI	CCGC	6 cut(s)	229, 469, 531, 545, 563, 642
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	3 cut(s)	83, 438, 448
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	2 cut(s)	181, 483
BspLI	GGNNCC	3 cut(s)	6, 607, 714
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	707, 720
BsrDI	GCAATG	2 cut(s)	334, 393
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	575, 590, 676
BssMI	GATC	2 cut(s)	22, 712
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	361, 666
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	341, 533, 555
BstDEI	CTNAG	3 cut(s)	70, 425, 456
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	354, 531
BstKTI	GATC	2 cut(s)	25, 715
BstMBI	GATC	2 cut(s)	22, 712
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	4 cut(s)	340, 349, 541, 550
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	574, 589
BstSFI	CTRYAG	2 cut(s)	366, 610
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	544
BtgZI	GCGATG	2 cut(s)	539, 611
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 315
Cac8I	GCNNGC	3 cut(s)	341, 533, 555
CciI	TCATGA	2 cut(s)	181, 483
CfoI	GCGC	2 cut(s)	354, 531
Cfr13I	GGNCC	3 cut(s)	4, 606, 653
CseI	GACGC	1 cut(s)	275
CviAII	CATG	3 cut(s)	50, 182, 484
CviJI	RGCY	8 cut(s)	326, 397, 421, 455, 544, 553, 589, 708
CviKI_1	RGCY	8 cut(s)	326, 397, 421, 455, 544, 553, 589, 708
DdeI	CTNAG	3 cut(s)	70, 425, 456
DpnI	GATC	2 cut(s)	24, 714
DpnII	GATC	2 cut(s)	22, 712
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	3 cut(s)	4, 606, 653
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	3 cut(s)	53, 185, 487
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	3 cut(s)	49, 181, 483
FauI	CCCGC	1 cut(s)	524
Fnu4HI	GCNGC	2 cut(s)	350, 545
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	2 cut(s)	350, 545
FspBI	CTAG	2 cut(s)	398, 560
GlaI	GCGC	2 cut(s)	353, 530
GluI	GCNGC	2 cut(s)	350, 545
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	354, 531
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	53, 185, 487
Hin6I	GCGC	2 cut(s)	352, 529
HinP1I	GCGC	2 cut(s)	352, 529
HincII	GTYRAC	2 cut(s)	121, 164
HindII	GTYRAC	2 cut(s)	121, 164
HinfI	GANTC	2 cut(s)	74, 462
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	3 cut(s)	373, 632, 654
Hpy166II	GTNNAC	3 cut(s)	121, 158, 164
Hpy188I	TCNGA	4 cut(s)	73, 79, 262, 298
Hpy188III	TCNNGA	2 cut(s)	182, 484
Hpy8I	GTNNAC	3 cut(s)	121, 158, 164
HpyAV	CCTTC	1 cut(s)	620
HpyCH4III	ACNGT	2 cut(s)	361, 666
HpyCH4IV	ACGT	2 cut(s)	141, 160
HpyCH4V	TGCA	3 cut(s)	33, 251, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	340, 349, 541, 550
HpyF3I	CTNAG	3 cut(s)	70, 425, 456
HpySE526I	ACGT	2 cut(s)	141, 160
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	53, 185, 487
HspAI	GCGC	2 cut(s)	352, 529
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	22, 712
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	2 cut(s)	398, 560
MaeII	ACGT	2 cut(s)	141, 160
MaeIII	GTNAC	3 cut(s)	134, 361, 732
MalI	GATC	2 cut(s)	24, 714
MboI	GATC	2 cut(s)	22, 712
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	5 cut(s)	174, 204, 255, 472, 725
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	631
MseI	TTAA	1 cut(s)	120
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	576, 591
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	4 cut(s)	340, 349, 541, 550
NciI	CCSGG	1 cut(s)	591
NdeII	GATC	2 cut(s)	22, 712
NlaIII	CATG	3 cut(s)	53, 185, 487
NlaIV	GGNNCC	3 cut(s)	6, 607, 714
NmuCI	GTSAC	1 cut(s)	361
PagI	TCATGA	2 cut(s)	181, 483
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	462
PkrI	GCNGC	2 cut(s)	351, 546
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	3 cut(s)	6, 607, 714
PspPI	GGNCC	3 cut(s)	4, 606, 653
PspPPI	RGGWCCY	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	712
PvuI	CGATCG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	350, 545
Sau3AI	GATC	2 cut(s)	22, 712
Sau96I	GGNCC	3 cut(s)	4, 606, 653
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	576, 591
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	9 cut(s)	21, 93, 144, 163, 169, 399, 577, 631, 658
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	2 cut(s)	366, 610
SinI	GGWCC	3 cut(s)	4, 606, 653
Sse9I	AATT	5 cut(s)	174, 204, 255, 472, 725
SsiI	CCGC	6 cut(s)	229, 469, 531, 545, 563, 642
SspMI	CTAG	2 cut(s)	398, 560
StyD4I	CCNGG	2 cut(s)	574, 589
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	361, 666
TaiI	ACGT	2 cut(s)	144, 163
TaqI	TCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	174, 204, 255, 472, 725
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	70, 322
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	6 cut(s)	26, 170, 198, 301, 472, 500
TspRI	CASTG	2 cut(s)	70, 322
VpaK11BI	GGWCC	3 cut(s)	4, 606, 653
XapI	RAATTY	1 cut(s)	255
XspI	CTAG	2 cut(s)	398, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.