AT1G22050

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016524
Physical Location & Seq
Forward (+)
7771659 .. 7773154
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22050.1

Sequence Viewer

Length: 360 bp
ATGGCAGGTGAAGAAGATTGGATAGAACTAAAGTTTAGACTAGCAGATGGTACAGACATAGGTCCAAGCAAGTATAATCAATCTATGACTGTTTCTTCTCTTAAAGAGAAACTCATTTCTCAATGGCCTAAAGATAAAGAAAATACTCCAAAAACTGTAAATGATATGAAGCTCATCAATGCCGGGAAAATACTGGAGAACAATAGGACACTTGCTGAATCCAGGCTTCCTGTTTGTGAACTTCCTGGAATGATCATTACTATGCATATTGTTCTTCGCCTTCCTACGTTAGACAAAAAGAGCGAAAAACTGCAGAATGATCCACCGATGAAGAATCGCTGCGTGTGCACCATTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

119

Amino Acids

13.51

Weight (kDa)

8.45

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 6 - 117 6.5e-45 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016524)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22050
fragaria_vesca FvH4_5g38170
malus_domestica MD08G1176300.v1.1 MD15G1362100.v1.1
prunus_persica Prupe.1G510100_v2.0.a1
pyrus_communis pycom08g15130 pycom15g32470
rosa_chinensis RchiOBHm_Chr7g0240171
rosa_laevigata RLG00000000693
rosa_multiflora Rmu_sc0005008.1_g000005
rosa_roxburghii Rroxscaffold_3G00220350
rosa_rugosa Rorug07G0333900
rosa_samantha Rh7CG504200
rosa_wichuraiana Rw7G040850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 314
AfaI GTAC 1 cut(s) 52
AjnI CCWGG 2 cut(s) 221, 244
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 350
Alw44I GTGCAC 1 cut(s) 346
AlwI GGATC 1 cut(s) 314
AoxI GGCC 1 cut(s) 125
ApaLI GTGCAC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 223, 246
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 184
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 3 cut(s) 184, 223, 246
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 3 cut(s) 184, 223, 246
BoxI GACNNNNGTC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 2 cut(s) 223, 246
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 183
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 252, 319
BspANI GGCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 315
BspPI GGATC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 198
BssMI GATC 2 cut(s) 252, 319
Bst2UI CCWGG 2 cut(s) 223, 246
Bst4CI ACNGT 2 cut(s) 91, 157
BstKTI GATC 2 cut(s) 255, 322
BstMBI GATC 2 cut(s) 252, 319
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 2 cut(s) 223, 246
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 3 cut(s) 182, 221, 244
BstSFI CTRYAG 1 cut(s) 311
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 51
CviJI RGCY 3 cut(s) 127, 172, 226
CviKI_1 RGCY 3 cut(s) 127, 172, 226
CviQI GTAC 1 cut(s) 51
DpnI GATC 2 cut(s) 254, 321
DpnII GATC 2 cut(s) 252, 319
Eco47I GGWCC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 221, 244
EcoT22I ATGCAT 1 cut(s) 267
FaiI YATR 6 cut(s) 59, 75, 86, 167, 263, 267
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 340
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 183
HinfI GANTC 2 cut(s) 218, 334
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 239, 348
Hpy8I GTNNAC 2 cut(s) 239, 348
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 91, 157
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 265, 313, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 252, 319
LpnPI CCDG 7 cut(s) 179, 196, 208, 231, 235, 243, 258
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 287
MalI GATC 2 cut(s) 254, 321
MboI GATC 2 cut(s) 252, 319
MboII GAAGA 5 cut(s) 23, 26, 87, 266, 343
MhlI GDGCHC 1 cut(s) 350
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 3 cut(s) 184, 223, 246
MvaI CCWGG 2 cut(s) 223, 246
MwoI GCNNNNNNNGC 1 cut(s) 345
NciI CCSGG 1 cut(s) 184
NdeII GATC 2 cut(s) 252, 319
NsiI ATGCAT 1 cut(s) 267
PfeI GAWTC 2 cut(s) 218, 334
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 341
PshAI GACNNNNGTC 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 221, 244
PspGI CCWGG 2 cut(s) 221, 244
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 315
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 2 cut(s) 252, 319
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 3 cut(s) 184, 223, 246
SduI GDGCHC 1 cut(s) 350
SetI ASST 4 cut(s) 10, 64, 174, 290
SfcI CTRYAG 1 cut(s) 311
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 260
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 182, 221, 244
TaaI ACNGT 2 cut(s) 91, 157
TaiI ACGT 1 cut(s) 290
TfiI GAWTC 2 cut(s) 218, 334
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 339
TspDTI ATGAA 2 cut(s) 182, 344
VneI GTGCAC 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 62
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.