Rw7G040850

Membrane-anchored ubiquitin-fold protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016524
Physical Location & Seq
Forward (+)
63721607 .. 63724116
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040850.1

Sequence Viewer

Length: 330 bp
ATGGCAACCCAAGATTTGGTTGAGGTCAAATTCAGATTATCCGATGGCACCGACATAGGTCCACACAAGTATAGCCCAGCTGCTACTGTAGCATCACTCAAAGAGAAAATACTTACACAATGGCCCAAAGAGAAAGAAAATGGTCCAAGGACGATAAATGATTTGAAGCTTATTAATGCGGGAAAGATACTGGAAAACAACAGGACGCTTGCTGATTCTAGACTTCCAGTTGGTGAACTCCCAGGAGGTCTCATCACTATGCATGTGGTTGTGCGTATTCCTGTTGCAGACAAAAAGAGTGTATACAAGCAAGCTGAGAGTAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

109

Amino Acids

11.99

Weight (kDa)

9.26

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 104 4.5e-40 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016524)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22050
fragaria_vesca FvH4_5g38170
malus_domestica MD08G1176300.v1.1 MD15G1362100.v1.1
prunus_persica Prupe.1G510100_v2.0.a1
pyrus_communis pycom08g15130 pycom15g32470
rosa_chinensis RchiOBHm_Chr7g0240171
rosa_laevigata RLG00000000693
rosa_multiflora Rmu_sc0005008.1_g000005
rosa_roxburghii Rroxscaffold_3G00220350
rosa_rugosa Rorug07G0333900
rosa_samantha Rh7CG504200
rosa_wichuraiana Rw7G040850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 303
AciI CCGC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 3 cut(s) 80, 169, 314
AluI AGCT 3 cut(s) 80, 169, 314
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 29
AseI ATTAAT 1 cut(s) 174
AspS9I GGNCC 3 cut(s) 59, 123, 143
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 59, 143
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 2 cut(s) 59, 143
BmgT120I GGNCC 3 cut(s) 59, 123, 143
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 146, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 195, 227
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 146, 241
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 195, 227
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 254
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 254
BsrI ACTGG 2 cut(s) 195, 227
BssECI CCNNGG 2 cut(s) 146, 241
BssNAI GTATAC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 146
Bst1107I GTATAC 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 210, 312
BstDEI CTNAG 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 266
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 67
BstZ17I GTATAC 1 cut(s) 304
BsuRI GGCC 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 210, 312
Cfr13I GGNCC 3 cut(s) 59, 123, 143
CseI GACGC 1 cut(s) 214
CviAII CATG 1 cut(s) 263
CviJI RGCY 5 cut(s) 75, 80, 124, 169, 314
CviKI_1 RGCY 5 cut(s) 75, 80, 124, 169, 314
DdeI CTNAG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 2 cut(s) 59, 143
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 266
FaiI YATR 7 cut(s) 56, 72, 260, 264, 304, 326, 328
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 124
HgaI GACGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 215
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 62, 236, 304
Hpy188I TCNGA 2 cut(s) 35, 43
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 3 cut(s) 62, 236, 304
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 262, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 1 cut(s) 266
LpnPI CCDG 7 cut(s) 90, 176, 187, 228, 240, 255, 294
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 219
MluCI AATT 1 cut(s) 29
MnlI CCTC 2 cut(s) 16, 239
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 266
PfeI GAWTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 1 cut(s) 82
PshAI GACNNNNGTC 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 3 cut(s) 59, 123, 143
PvuII CAGCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 81
Sau96I GGNCC 3 cut(s) 59, 123, 143
ScrFI CCNGG 1 cut(s) 243
SetI ASST 6 cut(s) 27, 61, 82, 171, 250, 316
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 2 cut(s) 59, 143
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 1 cut(s) 29
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 88
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 59, 143
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 29
XbaI TCTAGA 1 cut(s) 218
XceI RCATGY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.