Prupe.1G510100_v2.0.a1

Membrane-anchored ubiquitin-fold protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016524
Physical Location & Seq
Reverse (-)
42021168 .. 42023731
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G510100.1

Sequence Viewer

Length: 360 bp
ATGGCAGCAGGTCAAGATTTGATTGAGCTCAAATTCAGGCTATCTGATGGCACCGACATAGGTCCACACAAGTATAGCCCATCTACCACTGTACAATCACTTAAAGAGAAAATACTTGCACAATGGCCTAAAGAGAAAGAAAATGGTCCAAGGACAATAAATGATTTGAAGCTTATTAATGCGGGAAAGATACTGGAAAACAACAGGACCCTAGCTGATTCCAGACTTCCAGTCGGTGAACTACCAGGAGGTCTCATCACTATGCATGTGGTTGTGCGTCCTCCTATTGCAGACAAAAAGAATGATAAATTGCTGAATGATTCTCCAGAGAAGCCTCGATGTTCATGTTCAATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

120

Amino Acids

13.11

Weight (kDa)

8.95

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016524)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22050
fragaria_vesca FvH4_5g38170
malus_domestica MD08G1176300.v1.1 MD15G1362100.v1.1
prunus_persica Prupe.1G510100_v2.0.a1
pyrus_communis pycom08g15130 pycom15g32470
rosa_chinensis RchiOBHm_Chr7g0240171
rosa_laevigata RLG00000000693
rosa_multiflora Rmu_sc0005008.1_g000005
rosa_roxburghii Rroxscaffold_3G00220350
rosa_rugosa Rorug07G0333900
rosa_samantha Rh7CG504200
rosa_wichuraiana Rw7G040850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 2 cut(s) 169, 351
AhdI GACNNNNNGTC 1 cut(s) 230
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 28, 172, 215
AluI AGCT 3 cut(s) 28, 172, 215
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 32
AseI ATTAAT 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 62, 146, 207
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 3 cut(s) 62, 146, 207
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 41, 88
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 3 cut(s) 62, 146, 207
BmeRI GACNNNNNGTC 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 62, 146, 207
BmiI GGNNCC 2 cut(s) 52, 209
BmrFI CCNGG 1 cut(s) 246
BoxI GACNNNNGTC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 198, 230
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 198, 230
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 91
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 52, 209
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 2 cut(s) 198, 230
BssECI CCNNGG 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 269
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 62, 146, 207
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 92
CviAII CATG 2 cut(s) 266, 345
CviJI RGCY 7 cut(s) 28, 40, 78, 127, 172, 215, 334
CviKI_1 RGCY 7 cut(s) 28, 40, 78, 127, 172, 215, 334
CviQI GTAC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 230
Eam1105I GACNNNNNGTC 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 3 cut(s) 62, 146, 207
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 269, 348
FaiI YATR 5 cut(s) 59, 75, 263, 267, 346
FatI CATG 2 cut(s) 265, 344
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 127
HgaI GACGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 269, 348
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 218, 320
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 65, 239
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 14, 222, 326
Hpy8I GTNNAC 2 cut(s) 65, 239
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 119, 265, 290
Hsp92II CATG 2 cut(s) 269, 348
LpnPI CCDG 8 cut(s) 22, 179, 190, 231, 235, 243, 258, 339
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 32, 308
MnlI CCTC 3 cut(s) 242, 291, 345
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 2 cut(s) 102, 177
MslI CAYNNNNRTG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
NlaIII CATG 2 cut(s) 269, 348
NlaIV GGNNCC 2 cut(s) 52, 209
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PfeI GAWTC 2 cut(s) 218, 320
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 207
PshAI GACNNNNGTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 52, 209
PspPI GGNCC 3 cut(s) 62, 146, 207
PspPPI RGGWCCY 1 cut(s) 207
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 102, 177
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 3 cut(s) 62, 146, 207
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 30
SetI ASST 6 cut(s) 13, 30, 64, 174, 217, 253
SinI GGWCC 3 cut(s) 62, 146, 207
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 2 cut(s) 32, 308
SsiI CCGC 1 cut(s) 182
SspI AATATT 1 cut(s) 354
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 337
TasI AATT 2 cut(s) 32, 308
TatI WGTACW 1 cut(s) 91
TfiI GAWTC 2 cut(s) 218, 320
Tru1I TTAA 2 cut(s) 102, 177
Tru9I TTAA 2 cut(s) 102, 177
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 3 cut(s) 62, 146, 207
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 269
XspI CTAG 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.