FvH4_5g38170

Membrane-anchored ubiquitin-fold protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016524
Physical Location & Seq
Forward (+)
28214095 .. 28215831
1737 bp
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UTR
Exon/CDS
Intron
FvH4_5g38170.t1

Sequence Viewer

Length: 387 bp
ATGGCAGCAACCCAAGATTTGATTGAGGTCAAATTCAGATTATCAGATGGCACCGACATAGGTCCACACAAGTACAGCCCAGCTGCCACTGTTGCATCACTCAAAGAGAAAATACTTACACAATGGCCCAAAGAGAAAGAAAATGGTCCAAGGATGATAAATGATTTGAAGCTTATTAATGCGGGAAAGATACTGGAAAACAACAGGACACTTGCTGATTCTAGACTTCCAGTTGGTGAACTCCCAGGAGGTCTCATCACTATGCATGTGGTTGTGCGTATTCCTGTTGCAGACAAAAAGAGTGGTAATTATGTTTCTATTTTTGGGCATGATAAGTTGCAGAATGATTCACCGGAGACGCCTAGATGTTCATGCACAATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

129

Amino Acids

14.05

Weight (kDa)

8.58

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 6 - 125 4.1e-40 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016524)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22050
fragaria_vesca FvH4_5g38170
malus_domestica MD08G1176300.v1.1 MD15G1362100.v1.1
prunus_persica Prupe.1G510100_v2.0.a1
pyrus_communis pycom08g15130 pycom15g32470
rosa_chinensis RchiOBHm_Chr7g0240171
rosa_laevigata RLG00000000693
rosa_multiflora Rmu_sc0005008.1_g000005
rosa_roxburghii Rroxscaffold_3G00220350
rosa_rugosa Rorug07G0333900
rosa_samantha Rh7CG504200
rosa_wichuraiana Rw7G040850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 83, 172
AluI AGCT 2 cut(s) 83, 172
Alw26I GTCTC 2 cut(s) 257, 350
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 5, 83
ApoI RAATTY 1 cut(s) 32
AseI ATTAAT 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 62, 126, 146
AsuHPI GGTGA 2 cut(s) 248, 342
AvaII GGWCC 2 cut(s) 62, 146
BanI GGYRCC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 17, 70
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 257, 350
BfaI CTAG 2 cut(s) 222, 363
BisI GCNGC 2 cut(s) 6, 84
BlsI GCNGC 2 cut(s) 7, 85
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 62, 146
BmgT120I GGNCC 3 cut(s) 62, 126, 146
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 104
BoxI GACNNNNGTC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 149, 244
BsaWI WCCGGW 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 198, 230
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 149, 244
BseGI GGATG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 198, 230
BseXI GCAGC 2 cut(s) 17, 70
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 257, 350
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 257
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 2 cut(s) 198, 230
BssECI CCNNGG 2 cut(s) 149, 244
BssNI GRCGYC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 359
BstF5I GGATG 1 cut(s) 159
BstMAI GTCTC 2 cut(s) 257, 350
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 269
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 17, 70
BsuRI GGCC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 62, 126, 146
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 3 cut(s) 266, 329, 372
CviJI RGCY 4 cut(s) 78, 83, 127, 172
CviKI_1 RGCY 4 cut(s) 78, 83, 127, 172
CviQI GTAC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 62, 146
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 269, 332, 375
FaiI YATR 6 cut(s) 59, 263, 267, 312, 330, 373
FatI CATG 3 cut(s) 265, 328, 371
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 6, 84
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 6, 84
FspBI CTAG 2 cut(s) 222, 363
GluI GCNGC 2 cut(s) 6, 84
GsaI CCCAGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 353
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 3 cut(s) 269, 332, 375
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 218, 347
HpaII CCGG 1 cut(s) 353
HphI GGTGA 2 cut(s) 248, 342
Hpy166II GTNNAC 2 cut(s) 65, 239
Hpy188I TCNGA 2 cut(s) 38, 46
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 2 cut(s) 65, 239
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 95, 265, 290, 340, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 269, 332, 375
LpnPI CCDG 8 cut(s) 93, 179, 190, 231, 243, 258, 297, 366
Lsp1109I GCAGC 2 cut(s) 17, 70
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 222, 363
MluCI AATT 2 cut(s) 32, 307
MnlI CCTC 2 cut(s) 19, 242
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 269, 332, 375
NlaIV GGNNCC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PfeI GAWTC 2 cut(s) 218, 347
PkrI GCNGC 2 cut(s) 7, 85
PshAI GACNNNNGTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 3 cut(s) 62, 126, 146
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 6, 84
Sau96I GGNCC 3 cut(s) 62, 126, 146
ScrFI CCNGG 1 cut(s) 246
SetI ASST 5 cut(s) 30, 64, 85, 174, 253
SfaNI GCATC 1 cut(s) 104
SinI GGWCC 2 cut(s) 62, 146
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 2 cut(s) 32, 307
SsiI CCGC 1 cut(s) 182
SspI AATATT 1 cut(s) 381
SspMI CTAG 2 cut(s) 222, 363
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 91
TasI AATT 2 cut(s) 32, 307
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 2 cut(s) 218, 347
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 94
TseI GCWGC 2 cut(s) 5, 83
TspDTI ATGAA 1 cut(s) 360
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 62, 146
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 1 cut(s) 269
XspI CTAG 2 cut(s) 222, 363
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.