Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006242

Physical Location & Seq

Genomic Coordinates Reverse (-)

36652077 .. 36655586

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATGGACCTTCGATTGATGTTGGCCAGGGACTTCCCTTTTCTAATGTTGCTCGCACTATGGTCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCAACAGGCAACAGCATTCTTGGCAAAAAAGCCTTCATATCCAAGCGTAGCTCTAGTGGTGTCACGACCGCTACTGAATTGAAGACTGCTATCTTGGGAGATGGACAACAAATTAATGTTATAGACACTCCTGGTCTTTTTGATAATTCTGCCAAATCTGACTTTATTGGCAAAGAAATTGCCCAATGCATTAAATTGGCCGAGGATGGGATCCATGCTGTTCTTGTGGTTCTCTCAATTAGAACTCGCTTTACAAAAGAAGAGGAGTCTGCACTCCGTAGCTTGGAAGCTCTATTTGGAAGTAAAATCTTTGACTATATGATTGTTGTCTTTACCGGAGGAGATGAGTTGGAAGAAAATGATGAGACTTTGGAAGATTATTTGGGCCATGATTGCCCGGAGCCTTTGAAGGGAATCCTTGGTCTGTGTGGAAATCGATGTGTGCTTTTTGATAACAAGACTACGGATAAAAGCAAGAGGGTCGAACAAGTGCAGCGGCTTCTCTCGCTTGTAAACTCGGTTATAGAACAGAATGGTGGGCGGCCATACACAGATGAGATATTTGCTGAAGCGAAGAAAGCGTCTATGAAACTTCGTGATCAACAAGAAGAGGTTGCTTCGAAGGGGTATTCCAAACGAGAAATAAATCTTTTGAATGAGCAAATGCGGCGTCAATATGATCTGCAGCTTAAACAAATTACTGAGATGCTTGAGTTAAAGATGAGAGTGCATACCATGATGCTTGAACAAAAGTTAGCAGATGAACATGTTGCACGACTAAAAGCAGAACTGCAGATTTTCCGAGAAGCTCAACAAAGGTCTGAGAATGAGATCCAACGGCTTAGATACGATCGACTAGCAGAGAAGCGGATATGCGATGGAAACAGCGGAGGCCACCGCATAGGCCTCGGAGACGTGTGTTCTTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad60-SLD_2

Protein Analysis

342

Amino Acids

38.13

Weight (kDa)

5.9

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIG1	PF04548	20 - 234	3.8e-81	AIG1 family
MMR_HSR1	PF01926	21 - 127	3.3e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22040
fragaria_vesca	FvH4_5g38161 FvH4_5g38161 FvH4_5g38161 FvH4_5g38161 FvH4_5g38161
malus_domestica	MD08G1176400.v1.1 MD08G1212800.v1.1 MD15G1362200.v1.1
prunus_persica	Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1
pyrus_communis	pycom08g15140 pycom15g32480
rosa_chinensis	RchiOBHm_Chr7g0240161
rosa_laevigata	RLG00000000694
rosa_multiflora	Rmu_sc0005008.1_g000006 Rmu_sc0005978.1_g000008 Rmu_sc0012732.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220360
rosa_rugosa	Rorug07G0333900
rosa_samantha	Rh7AG487500 Rh7BG460600 Rh7CG504100 Rh7DG472300
rosa_wichuraiana	Rw7G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	165, 592, 637, 763, 964, 984, 994
AclWI	GGATC	3 cut(s)	301, 314, 922
AcoI	YGGCCR	3 cut(s)	25, 294, 638
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	766
AfiI	CCNNNNNNNGG	3 cut(s)	303, 379, 506
AflIII	ACRYGT	2 cut(s)	862, 1011
AgsI	TTSAA	4 cut(s)	178, 505, 751, 842
AjiI	CACGTC	1 cut(s)	1012
AjnI	CCWGG	2 cut(s)	27, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	5 cut(s)	147, 378, 386, 784, 905
AluI	AGCT	5 cut(s)	147, 378, 386, 784, 905
Alw26I	GTCTC	2 cut(s)	455, 1002
AlwI	GGATC	3 cut(s)	301, 314, 922
AoxI	GGCC	6 cut(s)	25, 294, 481, 638, 988, 1000
ApeKI	GCWGC	2 cut(s)	589, 781
ArsI	GACNNNNNNTTYG	4 cut(s)	662, 694, 751, 783
AseI	ATTAAT	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	8, 481
AsuC2I	CCSGG	1 cut(s)	494
AsuII	TTCGAA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	601, 793
BccI	CCATC	3 cut(s)	191, 296, 968
BceAI	ACGGC	1 cut(s)	950
BcgI	CGANNNNNNTGC	4 cut(s)	559, 593, 985, 1019
BciT130I	CCWGG	2 cut(s)	29, 228
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	455, 1002
BfaI	CTAG	2 cut(s)	150, 953
BfmI	CTRYAG	2 cut(s)	779, 887
BisI	GCNGC	5 cut(s)	590, 593, 638, 764, 782
BlsI	GCNGC	5 cut(s)	591, 594, 639, 765, 783
Bme1390I	CCNGG	3 cut(s)	29, 228, 494
Bme18I	GGWCC	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	1012
BmgT120I	GGNCC	2 cut(s)	8, 481
BmiI	GGNNCC	2 cut(s)	308, 498
BmrFI	CCNGG	3 cut(s)	29, 228, 494
BmsI	GCATC	2 cut(s)	792, 825
BpiI	GAAGAC	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	716
BpuEI	CTTGAG	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	494
Bsa29I	ATCGAT	1 cut(s)	532
BsaHI	GRCGYC	1 cut(s)	766
BsaJI	CCNNGG	4 cut(s)	28, 297, 514, 1003
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 379, 506
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	29, 228
BseCI	ATCGAT	1 cut(s)	532
BseDI	CCNNGG	4 cut(s)	28, 297, 514, 1003
BseGI	GGATG	2 cut(s)	10, 307
BseLI	CCNNNNNNNGG	3 cut(s)	303, 379, 506
BseMII	CTCAG	2 cut(s)	789, 909
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	374, 450
BseXI	GCAGC	2 cut(s)	601, 793
BsgI	GTGCAG	2 cut(s)	351, 608
Bsh1285I	CGRYCG	2 cut(s)	165, 949
BshFI	GGCC	6 cut(s)	27, 296, 483, 640, 990, 1002
BshVI	ATCGAT	1 cut(s)	532
BsiEI	CGRYCG	2 cut(s)	165, 949
BsiSI	CCGG	2 cut(s)	432, 494
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	303, 379, 506
BsmAI	GTCTC	2 cut(s)	455, 1002
BsmBI	CGTCTC	1 cut(s)	1002
BsmFI	GGGAC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	6 cut(s)	27, 296, 483, 640, 990, 1002
Bsp119I	TTCGAA	1 cut(s)	716
Bsp143I	GATC	5 cut(s)	306, 694, 775, 927, 946
BspACI	CCGC	7 cut(s)	165, 592, 637, 763, 964, 984, 994
BspANI	GGCC	6 cut(s)	27, 296, 483, 640, 990, 1002
BspCNI	CTCAG	2 cut(s)	790, 910
BspDI	ATCGAT	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	308, 498
BspMAI	CTGCAG	2 cut(s)	783, 891
BspPI	GGATC	3 cut(s)	301, 314, 922
BspT104I	TTCGAA	1 cut(s)	716
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	4 cut(s)	28, 297, 514, 1003
BssMI	GATC	5 cut(s)	306, 694, 775, 927, 946
BssNI	GRCGYC	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	29, 228
Bst6I	CTCTTC	2 cut(s)	351, 699
BstACI	GRCGYC	1 cut(s)	766
BstBI	TTCGAA	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	4 cut(s)	67, 798, 918, 938
BstF5I	GGATG	2 cut(s)	10, 307
BstKTI	GATC	5 cut(s)	309, 697, 778, 930, 949
BstMAI	GTCTC	2 cut(s)	455, 1002
BstMBI	GATC	5 cut(s)	306, 694, 775, 927, 946
BstMCI	CGRYCG	2 cut(s)	165, 949
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 489, 601, 674, 763
BstNI	CCWGG	2 cut(s)	29, 228
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	3 cut(s)	27, 226, 492
BstSFI	CTRYAG	2 cut(s)	779, 887
BstV1I	GCAGC	2 cut(s)	601, 793
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	306, 927
BstYI	RGATCY	2 cut(s)	306, 927
Bsu15I	ATCGAT	1 cut(s)	532
BsuRI	GGCC	6 cut(s)	27, 296, 483, 640, 990, 1002
BsuTUI	ATCGAT	1 cut(s)	532
BtgZI	GCGATG	1 cut(s)	987
BtrI	CACGTC	1 cut(s)	1012
BtsCI	GGATG	2 cut(s)	10, 307
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	8, 481
ClaI	ATCGAT	1 cut(s)	532
CseI	GACGC	3 cut(s)	84, 666, 755
CviAII	CATG	4 cut(s)	311, 485, 832, 863
DdeI	CTNAG	4 cut(s)	67, 798, 918, 938
DpnI	GATC	5 cut(s)	308, 696, 777, 929, 948
DpnII	GATC	5 cut(s)	306, 694, 775, 927, 946
EaeI	YGGCCR	3 cut(s)	25, 294, 638
Eam1104I	CTCTTC	2 cut(s)	351, 699
EarI	CTCTTC	2 cut(s)	351, 699
Eco130I	CCWWGG	1 cut(s)	514
Eco147I	AGGCCT	1 cut(s)	1002
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	27, 226
EcoT14I	CCWWGG	1 cut(s)	514
EcoT22I	ATGCAT	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	1002
FaeI	CATG	4 cut(s)	314, 488, 835, 866
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	4 cut(s)	310, 484, 831, 862
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	5 cut(s)	590, 593, 638, 764, 782
FokI	GGATG	2 cut(s)	17, 314
Fsp4HI	GCNGC	5 cut(s)	590, 593, 638, 764, 782
FspBI	CTAG	2 cut(s)	150, 953
GluI	GCNGC	5 cut(s)	590, 593, 638, 764, 782
HaeIII	GGCC	6 cut(s)	27, 296, 483, 640, 990, 1002
HapII	CCGG	2 cut(s)	432, 494
HgaI	GACGC	3 cut(s)	84, 666, 755
Hin1I	GRCGYC	1 cut(s)	766
Hin1II	CATG	4 cut(s)	314, 488, 835, 866
HinfI	GANTC	2 cut(s)	362, 510
HpaII	CCGG	2 cut(s)	432, 494
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	4 cut(s)	256, 899, 919, 1007
Hpy188III	TCNNGA	2 cut(s)	160, 692
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	4 cut(s)	21, 139, 499, 712
HpyCH4IV	ACGT	1 cut(s)	1011
HpyCH4V	TGCA	8 cut(s)	98, 285, 368, 589, 781, 826, 869, 889
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 489, 601, 674, 763
HpyF3I	CTNAG	4 cut(s)	67, 798, 918, 938
HpySE526I	ACGT	1 cut(s)	1011
Hsp92I	GRCGYC	1 cut(s)	766
Hsp92II	CATG	4 cut(s)	314, 488, 835, 866
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	5 cut(s)	306, 694, 775, 927, 946
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	8 cut(s)	14, 41, 66, 87, 213, 240, 445, 507
Lsp1109I	GCAGC	2 cut(s)	601, 793
LweI	GCATC	2 cut(s)	792, 825
MaeI	CTAG	2 cut(s)	150, 953
MaeII	ACGT	1 cut(s)	1011
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	5 cut(s)	308, 696, 777, 929, 948
MboI	GATC	5 cut(s)	306, 694, 775, 927, 946
MboII	GAAGA	6 cut(s)	190, 368, 461, 482, 682, 716
MflI	RGATCY	2 cut(s)	306, 927
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	7 cut(s)	173, 207, 241, 273, 290, 333, 792
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	3 cut(s)	52, 426, 955
MnlI	CCTC	7 cut(s)	292, 352, 428, 567, 700, 980, 1013
Mox20I	TGGCCA	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	5 cut(s)	210, 288, 786, 812, 1022
Msp20I	TGGCCA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	592, 984
MspI	CCGG	2 cut(s)	432, 494
MspR9I	CCNGG	3 cut(s)	29, 228, 494
Mva1269I	GAATGC	1 cut(s)	111
MvaI	CCWGG	2 cut(s)	29, 228
MwoI	GCNNNNNNNGC	5 cut(s)	117, 489, 601, 674, 763
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	5 cut(s)	306, 694, 775, 927, 946
NlaIII	CATG	4 cut(s)	314, 488, 835, 866
NlaIV	GGNNCC	2 cut(s)	308, 498
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	287
NspI	RCATGY	1 cut(s)	866
NspV	TTCGAA	1 cut(s)	716
PceI	AGGCCT	1 cut(s)	1002
PciI	ACATGT	1 cut(s)	862
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	510
PkrI	GCNGC	5 cut(s)	591, 594, 639, 765, 783
Ple19I	CGATCG	1 cut(s)	949
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PscI	ACATGT	1 cut(s)	862
PshBI	ATTAAT	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	27, 226
PspGI	CCWGG	2 cut(s)	27, 226
PspN4I	GGNNCC	2 cut(s)	308, 498
PspPI	GGNCC	2 cut(s)	8, 481
PsrI	GAACNNNNNNTAC	2 cut(s)	331, 363
PstI	CTGCAG	2 cut(s)	783, 891
PsuI	RGATCY	2 cut(s)	306, 927
PvuI	CGATCG	1 cut(s)	949
SaqAI	TTAA	5 cut(s)	210, 288, 786, 812, 1022
SatI	GCNGC	5 cut(s)	590, 593, 638, 764, 782
Sau3AI	GATC	5 cut(s)	306, 694, 775, 927, 946
Sau96I	GGNCC	2 cut(s)	8, 481
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	29, 228, 494
SetI	ASST	9 cut(s)	13, 149, 380, 388, 711, 786, 907, 917, 1014
SfaNI	GCATC	2 cut(s)	792, 825
SfcI	CTRYAG	2 cut(s)	779, 887
SfuI	TTCGAA	1 cut(s)	716
SinI	GGWCC	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	7 cut(s)	173, 207, 241, 273, 290, 333, 792
SseBI	AGGCCT	1 cut(s)	1002
SsiI	CCGC	7 cut(s)	165, 592, 637, 763, 964, 984, 994
SspMI	CTAG	2 cut(s)	150, 953
StuI	AGGCCT	1 cut(s)	1002
StyD4I	CCNGG	3 cut(s)	27, 226, 492
StyI	CCWWGG	1 cut(s)	514
TaiI	ACGT	1 cut(s)	1014
TaqI	TCGA	5 cut(s)	14, 532, 579, 716, 949
TasI	AATT	7 cut(s)	173, 207, 241, 273, 290, 333, 792
TauI	GCSGC	3 cut(s)	595, 640, 766
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	5 cut(s)	210, 288, 786, 812, 1022
Tru9I	TTAA	5 cut(s)	210, 288, 786, 812, 1022
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	589, 781
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	121, 698, 873
TspGWI	ACGGA	2 cut(s)	362, 575
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	8
VspI	ATTAAT	1 cut(s)	210
XceI	RCATGY	1 cut(s)	866
XspI	CTAG	2 cut(s)	150, 953
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.