Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006242

Physical Location & Seq

Genomic Coordinates Reverse (-)

27623802 .. 27624690

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1212800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGGGCTCTTTTGAGATTGGCTGGTCCGAAGTCTGAGAGAAATGAGTGCCATGAGATCTCTCAGAATGACACCTGCAAGAGGCAAAGAATGTCACCATGTACTTTTGAGGAGAGCCAAAGACTAATTCCCAATCTTCCTGATGAGCTATCGATCCAAATTATTGCTAGATTCCCTAGAATTTGTTACTTCAATATCAGGCTGGTTTCCCGGAAGTGGAAGGAAACTGTTACTAGCTCTGAACTATTTAAATTGAGAAAAGAACTTGGTACAAGTGAAGAATGGCTGTACTTGTTGACGAAAATTGAAGAGGATAAACTTTCCTGGCATACTTTTGATCCCCTGTCAAGAAGGTGGCAGAGGCTACCTCAGATGCCCAATGTAGTTTATGAAGAAGAATTCAGCAAGAGTTCTTCTAGGTTTTCGATGTGGAATATGGTGGGCCCAAGCATCGAAATTGATCATACTATTAGAGGCTGGTTAGGGAGAAAGAACGCATTTGAACGAATGCTGTTTTGTGGTGGATTTTATAAAGCTACGACCGTGAGGTGCGTCTGGAGATTTGATCCAATTCAGAATGCATGGCATGGAGTGACAATCATGTCGGCAAGTAGAGCCTATTGTAAGACAGGTATTCTGAATAACAAACTTTATGTTGTTGGAGGGGTTACTCGGGAACGAGGTGGATTGATCCCTCTTCAGTCTGCTGAAGTTTTTGAGCCCTCCACCGGTACATGGTCTGAAGTACCAAGCATGCCATTCTCAAGGGCTCGAGCGCTGCCCACTGCCTTTTTGACTGACATGGAAGGATATACCGGCGAGCTGTATGCCGCGCGAAGATTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

283

Amino Acids

32.66

Weight (kDa)

9.18

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	43 - 84	2.7e-09	F-box domain
Kelch_FKB95	PF25210	172 - 253	1.7e-08	FKB95, Kelch-repeats domain
Kelch_1	PF01344	205 - 253	2e-11	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22040
fragaria_vesca	FvH4_5g38161 FvH4_5g38161 FvH4_5g38161 FvH4_5g38161 FvH4_5g38161
malus_domestica	MD08G1176400.v1.1 MD08G1212800.v1.1 MD15G1362200.v1.1
prunus_persica	Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1
pyrus_communis	pycom08g15140 pycom15g32480
rosa_chinensis	RchiOBHm_Chr7g0240161
rosa_laevigata	RLG00000000694
rosa_multiflora	Rmu_sc0005008.1_g000006 Rmu_sc0005978.1_g000008 Rmu_sc0012732.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220360
rosa_rugosa	Rorug07G0333900
rosa_samantha	Rh7AG487500 Rh7BG460600 Rh7CG504100 Rh7DG472300
rosa_wichuraiana	Rw7G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AarI	CACCTGC	1 cut(s)	83
AasI	GACNNNNNNGTC	1 cut(s)	601
Acc36I	ACCTGC	1 cut(s)	83
AccII	CGCG	2 cut(s)	833, 835
AciI	CCGC	1 cut(s)	831
AclWI	GGATC	4 cut(s)	148, 332, 560, 685
AcsI	RAATTY	2 cut(s)	180, 398
AcuI	CTGAAG	3 cut(s)	683, 729, 762
AfaI	GTAC	5 cut(s)	103, 271, 290, 733, 747
AfeI	AGCGCT	1 cut(s)	777
AfiI	CCNNNNNNNGG	4 cut(s)	81, 216, 728, 735
AgeI	ACCGGT	1 cut(s)	728
AgsI	TTSAA	3 cut(s)	193, 308, 503
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	4 cut(s)	148, 237, 536, 823
AluI	AGCT	4 cut(s)	148, 237, 536, 823
AlwI	GGATC	4 cut(s)	148, 332, 560, 685
Ama87I	CYCGRG	2 cut(s)	672, 771
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	1 cut(s)	442
ApaI	GGGCCC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	778
ApoI	RAATTY	2 cut(s)	180, 398
AsiGI	ACCGGT	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	778, 835
AspS9I	GGNCC	3 cut(s)	26, 442, 443
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	87
AvaI	CYCGRG	2 cut(s)	672, 771
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	446
BanII	GRGCYC	4 cut(s)	10, 446, 723, 772
BbvI	GCAGC	1 cut(s)	765
BcgI	CGANNNNNNTGC	2 cut(s)	809, 843
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	4 cut(s)	168, 177, 234, 417
BfoI	RGCGCY	1 cut(s)	779
BfuAI	ACCTGC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	2 cut(s)	779, 831
BlsI	GCNGC	2 cut(s)	780, 832
Bme1390I	CCNGG	2 cut(s)	211, 325
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	2 cut(s)	672, 771
BmgT120I	GGNCC	3 cut(s)	26, 442, 443
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	2 cut(s)	211, 325
BmsI	GCATC	2 cut(s)	363, 459
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	748
BpuMI	CCSGG	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 216, 728, 735
Bse118I	RCCGGY	2 cut(s)	728, 815
BseBI	CCWGG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	152
BseLI	CCNNNNNNNGG	4 cut(s)	81, 216, 728, 735
BseMII	CTCAG	3 cut(s)	27, 77, 383
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	765
Bsh1236I	CGCG	2 cut(s)	833, 835
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	444
BshTI	ACCGGT	1 cut(s)	728
BshVI	ATCGAT	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	543
BsiHKCI	CYCGRG	2 cut(s)	672, 771
BsiSI	CCGG	3 cut(s)	211, 729, 816
BslI	CCNNNNNNNGG	4 cut(s)	81, 216, 728, 735
BsmI	GAATGC	2 cut(s)	513, 583
BsnI	GGCC	1 cut(s)	444
BsoBI	CYCGRG	2 cut(s)	672, 771
Bsp120I	GGGCCC	1 cut(s)	442
Bsp1286I	GDGCHC	4 cut(s)	10, 446, 723, 772
Bsp143I	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
BspACI	CCGC	1 cut(s)	831
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	3 cut(s)	28, 76, 382
BspDI	ATCGAT	1 cut(s)	152
BspFNI	CGCG	2 cut(s)	833, 835
BspLI	GGNNCC	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	4 cut(s)	148, 332, 560, 685
BsrFI	RCCGGY	2 cut(s)	728, 815
BssAI	RCCGGY	2 cut(s)	728, 815
BssMI	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	229, 544
Bst6I	CTCTTC	2 cut(s)	303, 702
BstC8I	GCNNGC	2 cut(s)	755, 821
BstDEI	CTNAG	3 cut(s)	36, 63, 369
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstFNI	CGCG	2 cut(s)	833, 835
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	2 cut(s)	778, 835
BstKTI	GATC	6 cut(s)	60, 156, 340, 463, 568, 693
BstMBI	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	209, 323
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	2 cut(s)	833, 835
BstV1I	GCAGC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	444
BsuTUI	ATCGAT	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	783
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	755, 821
CfoI	GCGC	2 cut(s)	778, 835
Cfr10I	RCCGGY	2 cut(s)	728, 815
Cfr13I	GGNCC	3 cut(s)	26, 442, 443
ClaI	ATCGAT	1 cut(s)	152
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	5 cut(s)	102, 270, 289, 732, 746
CspAI	ACCGGT	1 cut(s)	728
CviAII	CATG	8 cut(s)	53, 99, 582, 587, 601, 735, 754, 802
CviQI	GTAC	5 cut(s)	102, 270, 289, 732, 746
DdeI	CTNAG	3 cut(s)	36, 63, 369
DpnI	GATC	6 cut(s)	59, 155, 339, 462, 567, 692
DpnII	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
DraI	TTTAAA	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	303, 702
EarI	CTCTTC	2 cut(s)	303, 702
Eco24I	GRGCYC	4 cut(s)	10, 446, 723, 772
Eco47I	GGWCC	1 cut(s)	26
Eco47III	AGCGCT	1 cut(s)	777
Eco57I	CTGAAG	3 cut(s)	683, 729, 762
Eco88I	CYCGRG	2 cut(s)	672, 771
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	4 cut(s)	10, 446, 723, 772
FaeI	CATG	8 cut(s)	56, 102, 585, 590, 604, 738, 757, 805
FatI	CATG	8 cut(s)	52, 98, 581, 586, 600, 734, 753, 801
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	779, 831
FriOI	GRGCYC	4 cut(s)	10, 446, 723, 772
Fsp4HI	GCNGC	2 cut(s)	779, 831
FspBI	CTAG	4 cut(s)	168, 177, 234, 417
GlaI	GCGC	2 cut(s)	777, 834
GluI	GCNGC	2 cut(s)	779, 831
GsuI	CTGGAG	1 cut(s)	577
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	3 cut(s)	211, 729, 816
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	2 cut(s)	778, 835
Hin1II	CATG	8 cut(s)	56, 102, 585, 590, 604, 738, 757, 805
Hin6I	GCGC	2 cut(s)	776, 833
HinP1I	GCGC	2 cut(s)	776, 833
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	3 cut(s)	211, 729, 816
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	8 cut(s)	30, 37, 66, 241, 372, 576, 639, 742
Hpy188III	TCNNGA	4 cut(s)	140, 348, 556, 674
Hpy8I	GTNNAC	1 cut(s)	297
HpyAV	CCTTC	3 cut(s)	214, 345, 800
HpyCH4III	ACNGT	2 cut(s)	229, 544
HpyCH4V	TGCA	2 cut(s)	78, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	3 cut(s)	36, 63, 369
Hsp92II	CATG	8 cut(s)	56, 102, 585, 590, 604, 738, 757, 805
HspAI	GCGC	2 cut(s)	776, 833
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	2 cut(s)	363, 459
MaeI	CTAG	4 cut(s)	168, 177, 234, 417
MaeIII	GTNAC	5 cut(s)	93, 185, 229, 592, 667
MalI	GATC	6 cut(s)	59, 155, 339, 462, 567, 692
MboI	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
MboII	GAAGA	8 cut(s)	128, 290, 320, 404, 405, 407, 689, 849
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	4 cut(s)	10, 446, 723, 772
MluCI	AATT	8 cut(s)	126, 159, 180, 251, 303, 398, 456, 570
MmeI	TCCRAC	1 cut(s)	640
Mph1103I	ATGCAT	1 cut(s)	583
MseI	TTAA	1 cut(s)	249
MspI	CCGG	3 cut(s)	211, 729, 816
MspR9I	CCNGG	2 cut(s)	211, 325
Mva1269I	GAATGC	2 cut(s)	513, 583
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	833, 835
MwoI	GCNNNNNNNGC	1 cut(s)	614
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
NlaIII	CATG	8 cut(s)	56, 102, 585, 590, 604, 738, 757, 805
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	2 cut(s)	93, 592
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	757
PaeI	GCATGC	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	771
PaqCI	CACCTGC	1 cut(s)	83
PctI	GAATGC	2 cut(s)	513, 583
PfeI	GAWTC	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	728
PkrI	GCNGC	2 cut(s)	780, 832
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	444
PspOMI	GGGCCC	1 cut(s)	442
PspPI	GGNCC	3 cut(s)	26, 442, 443
PspXI	VCTCGAGB	1 cut(s)	771
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	5 cut(s)	103, 271, 290, 733, 747
RsaNI	GTAC	5 cut(s)	102, 270, 289, 732, 746
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	779, 831
Sau3AI	GATC	6 cut(s)	57, 153, 337, 460, 565, 690
Sau96I	GGNCC	3 cut(s)	26, 442, 443
ScrFI	CCNGG	2 cut(s)	211, 325
SduI	GDGCHC	4 cut(s)	10, 446, 723, 772
SfaNI	GCATC	2 cut(s)	363, 459
Sfr274I	CTCGAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	771
SmiI	ATTTAAAT	1 cut(s)	250
SmlI	CTYRAG	2 cut(s)	763, 771
SmoI	CTYRAG	2 cut(s)	763, 771
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	8 cut(s)	126, 159, 180, 251, 303, 398, 456, 570
SsiI	CCGC	1 cut(s)	831
SspMI	CTAG	4 cut(s)	168, 177, 234, 417
StyD4I	CCNGG	2 cut(s)	209, 323
SwaI	ATTTAAAT	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	229, 544
TaqI	TCGA	4 cut(s)	152, 425, 453, 772
TasI	AATT	8 cut(s)	126, 159, 180, 251, 303, 398, 456, 570
TatI	WGTACW	2 cut(s)	101, 288
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	93, 592
TseI	GCWGC	1 cut(s)	778
Tsp45I	GTSAC	2 cut(s)	93, 592
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	790
VpaK11BI	GGWCC	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	2 cut(s)	180, 398
XceI	RCATGY	1 cut(s)	757
XhoI	CTCGAG	1 cut(s)	771
XspI	CTAG	4 cut(s)	168, 177, 234, 417
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.