Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006242

Physical Location & Seq

Genomic Coordinates Reverse (-)

42026338 .. 42029123

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G510200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGGGGGTATTTTGAGTTTGGTTGGTCCCAGATCTCGGACAAACGAGTACCATGAAGTCTCTCCGAATGATACCTGTAAGAGGCAAAGATTATCATCATGTACTTTCGAGGAGAGACAAAGATTAATTCCCAATCTTCCTGATGAGATATCAATCCAAATTATTGCTAGACTTCCTAGAATTTGCTACTTTGATATCAGGCTGGTTTCACGGAAGTGGAAGGAAACTGTTAGGAGCTCTGAACTTTTTAAATTGCGAAAAGAACTTGGTGGAACTGAAGAATGGCTATACATGTTGACTAAAATTGAAGAGGATAAACTTTCCTGGCATGCTTTTGACCCCCTGTCAAAAAAGTGGCTGAGGCTACCTCAGATGCCCAATGTAGTTTATGAAGAAGAATCTAGTAAGGGTTTGTCTTGGTTTTGGATGTTGAATATGGTGGGCCCAACCATCAAAATTGCTGATACTATTAGAGGCTGGCTAGGGAGAAAGAATTCATTTGATCAAATGCCATTTTGTGGTTGTGCCATTGGTGCTGTTGATGGATGCCTCTATGTTCTAGGTGGATTTTATAGATCTACGACCATGAGGTGCGTCTGGAGATTTGATCCTATTCAGAATGCATGGAGTGAAGTGAGAGCCATGTCCGCAAGTAGGGCCTATTGTAAGACAGGCATTCTGAATAACAAGCTCTATGTTGTTGGAGGGGTTAGTCGAGGACGAGGTGGATTGATCCCTCTTCAGTCTGCCGAAGTTTTTGAGCCCTCCACTGGTACATGGTCCCAAGTACCAAGCATGCCATTTGCAAGAGCTCAAGCCTTGCCGACTGCCTTTTTGACTGACATGCTAAGGCCAATTGCCACTGGGTTGACTTCATACATGGGAAGGTTATGTGTATCCCAGAGTCTCTACTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAACTTATGATCCTGAGACAAATTCATGGGATGATATGCCAATTGGCATGGGAGAGGGTTGGCCTGCTCGGCAGGCGGGTACAAAGTTGAGCGTTGTGGTTGATGGTGAATTGTATGCATTTGATCCTTCGAGTTCTTTGGATAGTGGTAAGATCAAGGTGTATGATCAAGGAGAAGATGCTTGGAAAGTTGTTATAGGAAAAGTCCCTATTCACGACTTTGCTGGTTCAGAATCTCCATATTTACTTGCTGGTTTTCATGGAAAGCTTCATGTCATCACAAAAGATGTAAATCATGAAATCACAGTTCTGCGGGCTGACCTGTGCAGTAATTTGGGGCCTTTGTCACCAAGCTCACCTTCTCTCTTACCTGGCTCCTCACTTGATCATTTTGACTCAGTGGCAGAATCAGATGCAGTTGTGTGGAAGTCCATTGGCACAAGGGATTTTGGGTCAGTTGAATTGGTTGGTTGTCAAGTCATTGACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

478

Amino Acids

53.19

Weight (kDa)

6.06

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22040
fragaria_vesca	FvH4_5g38161 FvH4_5g38161 FvH4_5g38161 FvH4_5g38161 FvH4_5g38161
malus_domestica	MD08G1176400.v1.1 MD08G1212800.v1.1 MD15G1362200.v1.1
prunus_persica	Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1 Prupe.1G510200_v2.0.a1
pyrus_communis	pycom08g15140 pycom15g32480
rosa_chinensis	RchiOBHm_Chr7g0240161
rosa_laevigata	RLG00000000694
rosa_multiflora	Rmu_sc0005008.1_g000006 Rmu_sc0005978.1_g000008 Rmu_sc0012732.1_g000003
rosa_roxburghii	Rroxscaffold_3G00220360
rosa_rugosa	Rorug07G0333900
rosa_samantha	Rh7AG487500 Rh7BG460600 Rh7CG504100 Rh7DG472300
rosa_wichuraiana	Rw7G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	518
AciI	CCGC	3 cut(s)	648, 1019, 1255
AclWI	GGATC	4 cut(s)	602, 727, 947, 1061
AcsI	RAATTY	3 cut(s)	180, 493, 964
AcuI	CTGAAG	2 cut(s)	297, 725
AfaI	GTAC	5 cut(s)	50, 103, 775, 789, 1024
AfiI	CCNNNNNNNGG	5 cut(s)	36, 81, 518, 654, 770
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	308, 433, 1403
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	323, 1312
AjuI	GAANNNNNNNTTGG	2 cut(s)	1285, 1317
AleI	CACNNNNGTG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	237, 691, 812, 1210, 1296
AluI	AGCT	5 cut(s)	237, 691, 812, 1210, 1296
Alw21I	GWGCWC	2 cut(s)	239, 814
Alw26I	GTCTC	4 cut(s)	64, 109, 911, 953
AlwI	GGATC	4 cut(s)	602, 727, 947, 1061
AoxI	GGCC	6 cut(s)	442, 657, 851, 917, 1004, 1280
ApaI	GGGCCC	1 cut(s)	446
ApoI	RAATTY	3 cut(s)	180, 493, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	817, 849
AseI	ATTAAT	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	493
AspS9I	GGNCC	7 cut(s)	26, 442, 443, 657, 780, 918, 1280
AsuHPI	GGTGA	3 cut(s)	1061, 1281, 1290
AvaII	GGWCC	2 cut(s)	26, 780
BaeGI	GKGCMC	1 cut(s)	446
BanII	GRGCYC	4 cut(s)	239, 446, 765, 814
Bbv12I	GWGCWC	2 cut(s)	239, 814
BbvCI	CCTCAGC	1 cut(s)	359
BccI	CCATC	3 cut(s)	458, 536, 1040
BciT130I	CCWGG	2 cut(s)	325, 1314
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	3 cut(s)	502, 1108, 1327
BcoDI	GTCTC	4 cut(s)	64, 109, 911, 953
BfaI	CTAG	5 cut(s)	168, 177, 402, 482, 560
BfuI	GTATCC	1 cut(s)	907
BglI	GCCNNNNNGGC	1 cut(s)	1012
BglII	AGATCT	2 cut(s)	32, 575
Bme1390I	CCNGG	2 cut(s)	325, 1314
Bme18I	GGWCC	2 cut(s)	26, 780
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	7 cut(s)	26, 442, 443, 657, 780, 918, 1280
BmiI	GGNNCC	5 cut(s)	28, 444, 782, 1281, 1318
BmrFI	CCNGG	2 cut(s)	325, 1314
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	4 cut(s)	363, 536, 1111, 1345
BmuI	ACTGGG	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	1 cut(s)	619
Bpu10I	CCTNAGC	2 cut(s)	359, 848
BpuEI	CTTGAG	1 cut(s)	798
BsaBI	GATNNNNATC	3 cut(s)	94, 152, 1233
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 81, 518, 654, 770
Bse1I	ACTGG	2 cut(s)	775, 868
Bse8I	GATNNNNATC	3 cut(s)	94, 152, 1233
BseBI	CCWGG	2 cut(s)	325, 1314
BseGI	GGATG	3 cut(s)	432, 551, 979
BseJI	GATNNNNATC	3 cut(s)	94, 152, 1233
BseLI	CCNNNNNNNGG	5 cut(s)	36, 81, 518, 654, 770
BseMII	CTCAG	4 cut(s)	350, 383, 948, 1353
BseNI	ACTGG	2 cut(s)	775, 868
BseRI	GAGGAG	2 cut(s)	125, 1309
BseSI	GKGCMC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	1288
BshFI	GGCC	6 cut(s)	444, 659, 853, 919, 1006, 1282
BsiHKAI	GWGCWC	2 cut(s)	239, 814
BslFI	GGGAC	3 cut(s)	12, 766, 1133
BslI	CCNNNNNNNGG	5 cut(s)	36, 81, 518, 654, 770
BsmAI	GTCTC	4 cut(s)	64, 109, 911, 953
BsmFI	GGGAC	3 cut(s)	12, 766, 1133
BsmI	GAATGC	2 cut(s)	625, 675
BsnI	GGCC	6 cut(s)	444, 659, 853, 919, 1006, 1282
Bsp120I	GGGCCC	1 cut(s)	442
Bsp1286I	GDGCHC	4 cut(s)	239, 446, 765, 814
BspACI	CCGC	3 cut(s)	648, 1019, 1255
BspANI	GGCC	6 cut(s)	444, 659, 853, 919, 1006, 1282
BspCNI	CTCAG	4 cut(s)	351, 382, 949, 1352
BspHI	TCATGA	1 cut(s)	1237
BspLI	GGNNCC	5 cut(s)	28, 444, 782, 1281, 1318
BspPI	GGATC	4 cut(s)	602, 727, 947, 1061
BsrI	ACTGG	2 cut(s)	775, 868
Bst2UI	CCWGG	2 cut(s)	325, 1314
Bst4CI	ACNGT	2 cut(s)	229, 1249
Bst6I	CTCTTC	2 cut(s)	303, 744
BstC8I	GCNNGC	6 cut(s)	330, 479, 797, 1008, 1017, 1257
BstDEI	CTNAG	5 cut(s)	359, 369, 848, 957, 1339
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	432, 551, 979
BstMAI	GTCTC	4 cut(s)	64, 109, 911, 953
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 647, 656, 1012, 1016
BstNI	CCWGG	2 cut(s)	325, 1314
BstNSI	RCATGY	4 cut(s)	295, 332, 799, 847
BstSCI	CCNGG	2 cut(s)	323, 1312
BstSLI	GKGCMC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	32, 575
BstYI	RGATCY	2 cut(s)	32, 575
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	6 cut(s)	444, 659, 853, 919, 1006, 1282
BtsCI	GGATG	3 cut(s)	432, 551, 979
BtsIMutI	CAGTG	3 cut(s)	768, 861, 1347
Cac8I	GCNNGC	6 cut(s)	330, 479, 797, 1008, 1017, 1257
CciI	TCATGA	1 cut(s)	1237
Cfr13I	GGNCC	7 cut(s)	26, 442, 443, 657, 780, 918, 1280
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	5 cut(s)	49, 102, 774, 788, 1023
CviQI	GTAC	5 cut(s)	49, 102, 774, 788, 1023
DdeI	CTNAG	5 cut(s)	359, 369, 848, 957, 1339
DraI	TTTAAA	1 cut(s)	250
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	303, 744
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	2 cut(s)	303, 744
Ecl136II	GAGCTC	2 cut(s)	237, 812
Eco24I	GRGCYC	4 cut(s)	239, 446, 765, 814
Eco32I	GATATC	2 cut(s)	150, 196
Eco47I	GGWCC	2 cut(s)	26, 780
Eco53kI	GAGCTC	2 cut(s)	237, 812
Eco57I	CTGAAG	2 cut(s)	297, 725
EcoICRI	GAGCTC	2 cut(s)	237, 812
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoO109I	RGGNCCY	2 cut(s)	657, 1280
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	323, 1312
EcoRV	GATATC	2 cut(s)	150, 196
EcoT22I	ATGCAT	2 cut(s)	625, 1063
EcoT38I	GRGCYC	4 cut(s)	239, 446, 765, 814
FalI	AAGNNNNNCTT	2 cut(s)	1285, 1317
FaqI	GGGAC	3 cut(s)	12, 766, 1133
FauI	CCCGC	2 cut(s)	1012, 1248
FbaI	TGATCA	3 cut(s)	502, 1108, 1327
FokI	GGATG	3 cut(s)	439, 558, 986
FriOI	GRGCYC	4 cut(s)	239, 446, 765, 814
FspBI	CTAG	5 cut(s)	168, 177, 402, 482, 560
GsuI	CTGGAG	1 cut(s)	619
HaeIII	GGCC	6 cut(s)	444, 659, 853, 919, 1006, 1282
HgaI	GACGC	1 cut(s)	583
HincII	GTYRAC	2 cut(s)	297, 870
HindII	GTYRAC	2 cut(s)	297, 870
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	5 cut(s)	398, 904, 1175, 1337, 1349
HphI	GGTGA	3 cut(s)	1061, 1281, 1290
Hpy166II	GTNNAC	2 cut(s)	297, 870
Hpy188I	TCNGA	8 cut(s)	39, 66, 241, 372, 618, 681, 1174, 1354
Hpy188III	TCNNGA	5 cut(s)	140, 598, 956, 1157, 1238
Hpy8I	GTNNAC	2 cut(s)	297, 870
HpyAV	CCTTC	4 cut(s)	214, 879, 1080, 1311
HpyCH4III	ACNGT	2 cut(s)	229, 1249
HpyCH4IV	ACGT	1 cut(s)	1428
HpyCH4V	TGCA	5 cut(s)	623, 806, 1061, 1269, 1358
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 647, 656, 1012, 1016
HpyF3I	CTNAG	5 cut(s)	359, 369, 848, 957, 1339
HpySE526I	ACGT	1 cut(s)	1428
Ksp22I	TGATCA	3 cut(s)	502, 1108, 1327
LmnI	GCTCC	2 cut(s)	234, 1322
LweI	GCATC	4 cut(s)	363, 536, 1111, 1345
MaeI	CTAG	5 cut(s)	168, 177, 402, 482, 560
MaeII	ACGT	1 cut(s)	1428
MaeIII	GTNAC	1 cut(s)	1287
MboII	GAAGA	7 cut(s)	128, 290, 320, 404, 407, 731, 1130
MfeI	CAATTG	2 cut(s)	855, 984
MflI	RGATCY	2 cut(s)	32, 575
MhlI	GDGCHC	4 cut(s)	239, 446, 765, 814
MlyI	GAGTC	2 cut(s)	913, 1331
MmeI	TCCRAC	1 cut(s)	682
Mph1103I	ATGCAT	2 cut(s)	625, 1063
MroXI	GAANNNNTTC	1 cut(s)	493
MseI	TTAA	2 cut(s)	125, 249
MslI	CAYNNNNRTG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	325, 1314
MunI	CAATTG	2 cut(s)	855, 984
Mva1269I	GAATGC	2 cut(s)	625, 675
MvaI	CCWGG	2 cut(s)	325, 1314
MwoI	GCNNNNNNNGC	5 cut(s)	533, 647, 656, 1012, 1016
NlaIV	GGNNCC	5 cut(s)	28, 444, 782, 1281, 1318
NmeAIII	GCCGAG	1 cut(s)	991
NmuCI	GTSAC	1 cut(s)	1287
NsiI	ATGCAT	2 cut(s)	625, 1063
NspI	RCATGY	4 cut(s)	295, 332, 799, 847
OliI	CACNNNNGTG	1 cut(s)	214
PaeI	GCATGC	2 cut(s)	332, 799
PagI	TCATGA	1 cut(s)	1237
PciI	ACATGT	1 cut(s)	291
PctI	GAATGC	2 cut(s)	625, 675
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	3 cut(s)	398, 1175, 1349
PflMI	CCANNNNNTGG	1 cut(s)	518
PleI	GAGTC	2 cut(s)	912, 1331
PpsI	GAGTC	2 cut(s)	912, 1331
PscI	ACATGT	1 cut(s)	291
PshBI	ATTAAT	1 cut(s)	125
Psp124BI	GAGCTC	2 cut(s)	239, 814
Psp6I	CCWGG	2 cut(s)	323, 1312
PspGI	CCWGG	2 cut(s)	323, 1312
PspN4I	GGNNCC	5 cut(s)	28, 444, 782, 1281, 1318
PspOMI	GGGCCC	1 cut(s)	442
PspPI	GGNCC	7 cut(s)	26, 442, 443, 657, 780, 918, 1280
PsuI	RGATCY	2 cut(s)	32, 575
RsaI	GTAC	5 cut(s)	50, 103, 775, 789, 1024
RsaNI	GTAC	5 cut(s)	49, 102, 774, 788, 1023
RseI	CAYNNNNRTG	1 cut(s)	214
SacI	GAGCTC	2 cut(s)	239, 814
SaqAI	TTAA	2 cut(s)	125, 249
Sau96I	GGNCC	7 cut(s)	26, 442, 443, 657, 780, 918, 1280
SchI	GAGTC	2 cut(s)	913, 1331
ScrFI	CCNGG	2 cut(s)	325, 1314
SduI	GDGCHC	4 cut(s)	239, 446, 765, 814
SfaNI	GCATC	4 cut(s)	363, 536, 1111, 1345
SinI	GGWCC	2 cut(s)	26, 780
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	813
SmoI	CTYRAG	1 cut(s)	813
SphI	GCATGC	2 cut(s)	332, 799
SsiI	CCGC	3 cut(s)	648, 1019, 1255
SspMI	CTAG	5 cut(s)	168, 177, 402, 482, 560
SstI	GAGCTC	2 cut(s)	239, 814
StyD4I	CCNGG	2 cut(s)	323, 1312
TaaI	ACNGT	2 cut(s)	229, 1249
TaiI	ACGT	1 cut(s)	1431
TaqI	TCGA	3 cut(s)	108, 715, 1073
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	3 cut(s)	398, 1175, 1349
Tru1I	TTAA	2 cut(s)	125, 249
Tru9I	TTAA	2 cut(s)	125, 249
TscAI	CASTG	3 cut(s)	775, 868, 1347
TseFI	GTSAC	1 cut(s)	1287
Tsp45I	GTSAC	1 cut(s)	1287
TspDTI	ATGAA	8 cut(s)	69, 405, 486, 864, 957, 1190, 1202, 1254
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	775, 868, 1347
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	26, 780
VspI	ATTAAT	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	3 cut(s)	180, 493, 964
XceI	RCATGY	4 cut(s)	295, 332, 799, 847
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	5 cut(s)	168, 177, 402, 482, 560
Zsp2I	ATGCAT	2 cut(s)	625, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.