Rh7DG472300

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006242
Physical Location & Seq
Forward (+)
67542619 .. 67547622
5004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG472300.1

Sequence Viewer

Length: 879 bp
ATGGGGGCTATTTTGAGTTTGGCTGGTCCCAAATCTAGGACAAACGATTATCTTGAGGTTTCTCAGAATGATACCTGTAAGCGGCAAAGAATGTCATCATGTACTTATGAGGAGAGCAAAAGACTATTTCCCAACCTTCCTGATGAGCTCTCAATCCAAATTATTGCTAGACTTCCTAGAATTTGCTACCCCCATATCAGGCTGGTGTCACAGAAGTGGAAGGAAACTGTTAAAAGCTCCGAACTATTTAAGTTGAGAAAAGAGCTTGGAAAAACAGAAGAATGGCTGTACTTGTTGACTAAAATCGAAGAGGATAAACTCTCGTGGCATGCTTTTGACCCCCTGTCAAGGAAGTGGCAGAGGTTACCTTGGATGCCAAACGTAGTTTATGAAGAAGAGTATGCTAGAGGTTTGCCTTGGTTTTCGATATGGAATATGGTTGGGCCAAGCATCAAAATTGCTGATACTATTAGAGGCTGGCTTGGGAGAAAGAACTCATTTGATCAAATGCCATTTTGTGGTTGTGCCATTGGTGCTCTTGATGGATGCCTCTATGTTCTAGGTGGATTTTGTAAAACTTCAACTATGAAATGTGTGTGGAGATTTGATCCAATTCAAAATGCATGGAGCGAAGTGCCAGCCATGTCCACAAGTAGAGCCTATGGTAAGACGGGCATTCTCAATAACAAGCTCTATGTCGTTGGAGGGGTTAGTCGAGGCCAAGGTGGATTGGCTCCTCTTCATTACATGAACATCCCGAGTCACTGGCAGAATCAGATACAGTTGTGTGGAAAGCCATTGGCACTAAGGATTTTGGGTCAAGTGAATTGGTCAGTTGTCAAGTTATTGACATTTAGTTTAAGGCGACTATCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

292

Amino Acids

33.5

Weight (kDa)

9.49

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 43 - 84 9.6e-09 F-box domain
Kelch_FKB95 PF25210 164 - 238 6.7e-09 FKB95, Kelch-repeats domain
Kelch_1 PF01344 171 - 216 3.9e-13 Kelch motif
Beta-prop_Calicin PF13964 178 - 238 3.6e-07 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 179 - 256 4.4e-06 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 518
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 602
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 2 cut(s) 103, 290
AfiI CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
AgsI TTSAA 2 cut(s) 582, 617
AhdI GACNNNNNGTC 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 4 cut(s) 148, 237, 265, 691
AluI AGCT 4 cut(s) 148, 237, 265, 691
Alw21I GWGCWC 2 cut(s) 150, 538
AlwI GGATC 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 757
AoxI GGCC 2 cut(s) 443, 718
ApoI RAATTY 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 26, 443
AvaI CYCGRG 1 cut(s) 757
AvaII GGWCC 1 cut(s) 26
BaeI ACNNNNGTAYC 2 cut(s) 770, 803
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 150, 538
BccI CCATC 1 cut(s) 536
BclI TGATCA 1 cut(s) 502
BfaI CTAG 5 cut(s) 36, 168, 177, 405, 560
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 757
BmgT120I GGNCC 2 cut(s) 26, 443
BmiI GGNNCC 2 cut(s) 28, 735
BmsI GCATC 3 cut(s) 363, 459, 536
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 368, 416, 721
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
Bse1I ACTGG 1 cut(s) 770
BseDI CCNNGG 3 cut(s) 368, 416, 721
BseGI GGATG 3 cut(s) 378, 551, 753
BseLI CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 2 cut(s) 125, 726
BshFI GGCC 2 cut(s) 445, 720
BsiHKAI GWGCWC 2 cut(s) 150, 538
BsiHKCI CYCGRG 1 cut(s) 757
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 2 cut(s) 445, 720
BsoBI CYCGRG 1 cut(s) 757
Bsp1286I GDGCHC 2 cut(s) 150, 538
Bsp143I GATC 2 cut(s) 502, 607
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 445, 720
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 28, 735
BspPI GGATC 1 cut(s) 602
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 3 cut(s) 368, 416, 721
BssMI GATC 2 cut(s) 502, 607
BssSI CACGAG 1 cut(s) 322
BssT1I CCWWGG 3 cut(s) 368, 416, 721
Bst2BI CACGAG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 229, 783
Bst6I CTCTTC 3 cut(s) 303, 390, 744
BstC8I GCNNGC 3 cut(s) 330, 479, 639
BstDEI CTNAG 2 cut(s) 63, 806
BstEII GGTNACC 1 cut(s) 363
BstF5I GGATG 3 cut(s) 378, 551, 753
BstKTI GATC 2 cut(s) 505, 610
BstMBI GATC 2 cut(s) 502, 607
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNSI RCATGY 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 363
BsuRI GGCC 2 cut(s) 445, 720
BtsCI GGATG 3 cut(s) 378, 551, 753
BtsIMutI CAGTG 1 cut(s) 763
Cac8I GCNNGC 3 cut(s) 330, 479, 639
Cfr13I GGNCC 2 cut(s) 26, 443
Csp6I GTAC 2 cut(s) 102, 289
CviAII CATG 5 cut(s) 99, 329, 624, 643, 748
CviQI GTAC 2 cut(s) 102, 289
DdeI CTNAG 2 cut(s) 63, 806
DpnI GATC 2 cut(s) 504, 609
DpnII GATC 2 cut(s) 502, 607
DriI GACNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 303, 390, 744
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 3 cut(s) 303, 390, 744
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 368, 416, 721
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 757
Eco91I GGTNACC 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 363
EcoT14I CCWWGG 3 cut(s) 368, 416, 721
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 3 cut(s) 368, 416, 721
FaeI CATG 5 cut(s) 102, 332, 627, 646, 751
FaqI GGGAC 1 cut(s) 12
FatI CATG 5 cut(s) 98, 328, 623, 642, 747
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 3 cut(s) 385, 558, 740
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 5 cut(s) 36, 168, 177, 405, 560
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 445, 720
Hin1II CATG 5 cut(s) 102, 332, 627, 646, 751
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 760, 772
Hpy166II GTNNAC 2 cut(s) 297, 648
Hpy188I TCNGA 3 cut(s) 66, 241, 777
Hpy188III TCNNGA 4 cut(s) 53, 140, 539, 757
Hpy8I GTNNAC 2 cut(s) 297, 648
HpyAV CCTTC 2 cut(s) 146, 214
HpyCH4III ACNGT 2 cut(s) 229, 783
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 2 cut(s) 63, 806
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 5 cut(s) 102, 332, 627, 646, 751
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 2 cut(s) 502, 607
LmnI GCTCC 3 cut(s) 242, 627, 739
LpnPI CCDG 9 cut(s) 9, 88, 153, 184, 188, 356, 463, 651, 751
LweI GCATC 3 cut(s) 363, 459, 536
MaeI CTAG 5 cut(s) 36, 168, 177, 405, 560
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 3 cut(s) 207, 363, 761
MalI GATC 2 cut(s) 504, 609
MboI GATC 2 cut(s) 502, 607
MboII GAAGA 5 cut(s) 290, 320, 404, 407, 731
MhlI GDGCHC 2 cut(s) 150, 538
MluCI AATT 5 cut(s) 159, 180, 456, 612, 826
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 682
Mph1103I ATGCAT 1 cut(s) 625
MseI TTAA 3 cut(s) 231, 249, 860
MslI CAYNNNNRTG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeII GATC 2 cut(s) 502, 607
NlaIII CATG 5 cut(s) 102, 332, 627, 646, 751
NlaIV GGNNCC 2 cut(s) 28, 735
NmuCI GTSAC 2 cut(s) 207, 761
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 1 cut(s) 332
OliI CACNNNNGTG 1 cut(s) 214
PaeI GCATGC 1 cut(s) 332
PctI GAATGC 1 cut(s) 675
PfeI GAWTC 1 cut(s) 772
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 28, 735
PspPI GGNCC 2 cut(s) 26, 443
RsaI GTAC 2 cut(s) 103, 290
RsaNI GTAC 2 cut(s) 102, 289
RseI CAYNNNNRTG 1 cut(s) 214
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 3 cut(s) 231, 249, 860
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 502, 607
Sau96I GGNCC 2 cut(s) 26, 443
SchI GAGTC 1 cut(s) 769
SduI GDGCHC 2 cut(s) 150, 538
SfaNI GCATC 3 cut(s) 363, 459, 536
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SphI GCATGC 1 cut(s) 332
Sse9I AATT 5 cut(s) 159, 180, 456, 612, 826
SsiI CCGC 1 cut(s) 82
SspMI CTAG 5 cut(s) 36, 168, 177, 405, 560
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 3 cut(s) 368, 416, 721
TaaI ACNGT 2 cut(s) 229, 783
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 306, 425, 715
TasI AATT 5 cut(s) 159, 180, 456, 612, 826
TatI WGTACW 2 cut(s) 101, 288
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 3 cut(s) 231, 249, 860
Tru9I TTAA 3 cut(s) 231, 249, 860
TscAI CASTG 1 cut(s) 770
TseFI GTSAC 2 cut(s) 207, 761
Tsp45I GTSAC 2 cut(s) 207, 761
TspDTI ATGAA 4 cut(s) 405, 602, 731, 764
TspRI CASTG 1 cut(s) 770
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 180
XceI RCATGY 1 cut(s) 332
XspI CTAG 5 cut(s) 36, 168, 177, 405, 560
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.