Rh7CG504100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006242
Physical Location & Seq
Forward (+)
68261838 .. 68263023
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG504100.1

Sequence Viewer

Length: 894 bp
ATGGGGGCTATTTTGAGTTTGGCTGGTCCCAAATCTAGGACAAACGATTATCTTGAGGTTTCTCAGAATGATACCTGTAAGCGGCAAAGAATGTCATCATGTACTTATGAGGAGAGCAAAAGACTATTTCCCAACCTTCCTGATGAGCTCTCAATCCAAATTATTGCTAGACTTCCTAGAATTTGCTACCCCCATATCAGGCTGGTGTCACAGAAGTGGAAGGAAACTGTTAAAAGCTCCGAACTATTTAAGTTGAGAAAAGAGCTTGGAAAAACAGAAGAATGGCTGTACTTGTTGACTAAAATCGAAGAGGATAAACTCTCGTGGCATGCTTTTGACCCCCTGTCAAGGAAGTGGCAGAGGTTACCTTGGATGCCAAACGTAGTTTATGAAGAAGAGTATGCTAGAGGTTTGCCTTGGTTTTCGATATGGAATATGGTTGGGCCAAGCATCAAAATTGCTGATACTATTAGAGGCTGGCTTGGGAGAAAGAACTCATTTGATCAAATGCCATTTTGTGGTTGTGCCATTGGTGCTCTTGATGGATGCCTCTATGTTCTAGGTGGATTTTGTAAAACTTCAACTATGAAATGTGTGTGGAGATTTGATCCAATTCAAAATGCATGGAGCGAAGTGCCAGCCATGTCCACAAGTAGAGCCTATGGTAAGACGGGCATTCTCAATAACAAGCTCTATGTCGTTGGAGGGGTTAGTCGAGGCCAAGGTGGATTGGCTCCTCTTCATTACATGAACATCCCGAGTCACTGGCAGAATCAGATACAGTTGTGTGGAAAGCCATTGGCACTAAGGATTTTGGGTCAAGTGAATTGGTCAGTTGTCAAGTTATTGACATTTAGTTTAAGGCGACTATCCCTATATGGTAAATCACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

297

Amino Acids

34.04

Weight (kDa)

9.52

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 43 - 84 9.9e-09 F-box domain
Kelch_FKB95 PF25210 164 - 238 7e-09 FKB95, Kelch-repeats domain
Kelch_1 PF01344 171 - 216 4e-13 Kelch motif
Beta-prop_Calicin PF13964 178 - 238 3.8e-07 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 179 - 256 4.5e-06 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 518
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 602
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 2 cut(s) 103, 290
AfiI CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
AgsI TTSAA 2 cut(s) 582, 617
AhdI GACNNNNNGTC 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 4 cut(s) 148, 237, 265, 691
AluI AGCT 4 cut(s) 148, 237, 265, 691
Alw21I GWGCWC 2 cut(s) 150, 538
AlwI GGATC 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 757
AoxI GGCC 2 cut(s) 443, 718
ApoI RAATTY 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 26, 443
AvaI CYCGRG 1 cut(s) 757
AvaII GGWCC 1 cut(s) 26
BaeI ACNNNNGTAYC 2 cut(s) 770, 803
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 150, 538
BccI CCATC 1 cut(s) 536
BclI TGATCA 1 cut(s) 502
BfaI CTAG 5 cut(s) 36, 168, 177, 405, 560
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 757
BmgT120I GGNCC 2 cut(s) 26, 443
BmiI GGNNCC 2 cut(s) 28, 735
BmsI GCATC 3 cut(s) 363, 459, 536
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 368, 416, 721
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
Bse1I ACTGG 1 cut(s) 770
BseDI CCNNGG 3 cut(s) 368, 416, 721
BseGI GGATG 3 cut(s) 378, 551, 753
BseLI CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 2 cut(s) 125, 726
BshFI GGCC 2 cut(s) 445, 720
BsiHKAI GWGCWC 2 cut(s) 150, 538
BsiHKCI CYCGRG 1 cut(s) 757
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 5 cut(s) 36, 81, 198, 348, 518
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 2 cut(s) 445, 720
BsoBI CYCGRG 1 cut(s) 757
Bsp1286I GDGCHC 2 cut(s) 150, 538
Bsp143I GATC 2 cut(s) 502, 607
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 445, 720
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 28, 735
BspPI GGATC 1 cut(s) 602
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 3 cut(s) 368, 416, 721
BssMI GATC 2 cut(s) 502, 607
BssSI CACGAG 1 cut(s) 322
BssT1I CCWWGG 3 cut(s) 368, 416, 721
Bst2BI CACGAG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 229, 783
Bst6I CTCTTC 3 cut(s) 303, 390, 744
BstC8I GCNNGC 3 cut(s) 330, 479, 639
BstDEI CTNAG 2 cut(s) 63, 806
BstEII GGTNACC 1 cut(s) 363
BstF5I GGATG 3 cut(s) 378, 551, 753
BstKTI GATC 2 cut(s) 505, 610
BstMBI GATC 2 cut(s) 502, 607
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNSI RCATGY 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 363
BsuRI GGCC 2 cut(s) 445, 720
BtsCI GGATG 3 cut(s) 378, 551, 753
BtsIMutI CAGTG 1 cut(s) 763
Cac8I GCNNGC 3 cut(s) 330, 479, 639
Cfr13I GGNCC 2 cut(s) 26, 443
Csp6I GTAC 2 cut(s) 102, 289
CviAII CATG 5 cut(s) 99, 329, 624, 643, 748
CviQI GTAC 2 cut(s) 102, 289
DdeI CTNAG 2 cut(s) 63, 806
DpnI GATC 2 cut(s) 504, 609
DpnII GATC 2 cut(s) 502, 607
DriI GACNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 303, 390, 744
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 3 cut(s) 303, 390, 744
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 368, 416, 721
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 757
Eco91I GGTNACC 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 363
EcoT14I CCWWGG 3 cut(s) 368, 416, 721
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 3 cut(s) 368, 416, 721
FaeI CATG 5 cut(s) 102, 332, 627, 646, 751
FaqI GGGAC 1 cut(s) 12
FatI CATG 5 cut(s) 98, 328, 623, 642, 747
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 3 cut(s) 385, 558, 740
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 5 cut(s) 36, 168, 177, 405, 560
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 445, 720
Hin1II CATG 5 cut(s) 102, 332, 627, 646, 751
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 760, 772
Hpy166II GTNNAC 2 cut(s) 297, 648
Hpy188I TCNGA 3 cut(s) 66, 241, 777
Hpy188III TCNNGA 4 cut(s) 53, 140, 539, 757
Hpy8I GTNNAC 2 cut(s) 297, 648
HpyAV CCTTC 2 cut(s) 146, 214
HpyCH4III ACNGT 2 cut(s) 229, 783
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 2 cut(s) 63, 806
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 5 cut(s) 102, 332, 627, 646, 751
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 2 cut(s) 502, 607
LmnI GCTCC 3 cut(s) 242, 627, 739
LpnPI CCDG 9 cut(s) 9, 88, 153, 184, 188, 356, 463, 651, 751
LweI GCATC 3 cut(s) 363, 459, 536
MaeI CTAG 5 cut(s) 36, 168, 177, 405, 560
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 3 cut(s) 207, 363, 761
MalI GATC 2 cut(s) 504, 609
MboI GATC 2 cut(s) 502, 607
MboII GAAGA 5 cut(s) 290, 320, 404, 407, 731
MhlI GDGCHC 2 cut(s) 150, 538
MluCI AATT 5 cut(s) 159, 180, 456, 612, 826
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 682
Mph1103I ATGCAT 1 cut(s) 625
MseI TTAA 3 cut(s) 231, 249, 860
MslI CAYNNNNRTG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeII GATC 2 cut(s) 502, 607
NlaIII CATG 5 cut(s) 102, 332, 627, 646, 751
NlaIV GGNNCC 2 cut(s) 28, 735
NmuCI GTSAC 2 cut(s) 207, 761
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 1 cut(s) 332
OliI CACNNNNGTG 1 cut(s) 214
PaeI GCATGC 1 cut(s) 332
PctI GAATGC 1 cut(s) 675
PfeI GAWTC 1 cut(s) 772
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 28, 735
PspPI GGNCC 2 cut(s) 26, 443
RsaI GTAC 2 cut(s) 103, 290
RsaNI GTAC 2 cut(s) 102, 289
RseI CAYNNNNRTG 1 cut(s) 214
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 3 cut(s) 231, 249, 860
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 502, 607
Sau96I GGNCC 2 cut(s) 26, 443
SchI GAGTC 1 cut(s) 769
SduI GDGCHC 2 cut(s) 150, 538
SfaNI GCATC 3 cut(s) 363, 459, 536
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SphI GCATGC 1 cut(s) 332
Sse9I AATT 5 cut(s) 159, 180, 456, 612, 826
SsiI CCGC 1 cut(s) 82
SspMI CTAG 5 cut(s) 36, 168, 177, 405, 560
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 3 cut(s) 368, 416, 721
TaaI ACNGT 2 cut(s) 229, 783
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 306, 425, 715
TasI AATT 5 cut(s) 159, 180, 456, 612, 826
TatI WGTACW 2 cut(s) 101, 288
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 3 cut(s) 231, 249, 860
Tru9I TTAA 3 cut(s) 231, 249, 860
TscAI CASTG 1 cut(s) 770
TseFI GTSAC 2 cut(s) 207, 761
Tsp45I GTSAC 2 cut(s) 207, 761
TspDTI ATGAA 4 cut(s) 405, 602, 731, 764
TspRI CASTG 1 cut(s) 770
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 180
XceI RCATGY 1 cut(s) 332
XspI CTAG 5 cut(s) 36, 168, 177, 405, 560
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.