AT1G22040

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006242
Physical Location & Seq
Forward (+)
7767924 .. 7770216
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22040.1

Sequence Viewer

Length: 1428 bp
ATGGGTTCTGTTATGAGTTTGAGCTGTTCCAAGAGGAAAGCAACGAGTCAGGACGTTGAGTGTTCAAGCGAATCTCGTAAAAGACGAAAGATATCTTCAGAGAACGATGAAGAAGAGTGTTGTAGATTGATTCCAAGTCTTCCTGATGAGTTATCTATACAGATTCTTGCTAGGCTTCCTAGAATTTGTTACTCGAGTGTTCGGTTGGTTTCTCGGAGGTGGAGATCGGCTGTTTCGACTTCTGAGGTGTATAGTTTGAGGAAAGAACTTGGGAGGACTGAGGAGTGGCTCTATGTGTTGACTAAAGGTCATGAGGATAAGCTTTTGTGGTATGCTTTAGATCCTGTGTCTACTAAATGGCAGAGATTGCCTCCAATGCCGGTTGTTGTTTATGAAGAAGAGTCTAGAAAGAGTTTATCTGGTTTGTGGAATATGATTACACCGAGCTTTAATGTTGGTGCGATTGTGAGGAGCTTTCTAGGTAGGAGGGACTCCTCTGAGCAAATGCCGTTTTGTGGGTGCGCTATTGGTGCTGTTGATGGGGGTCTTTATGTTATTGGTGGACTTTCTAGGTCTAAAACAGTGAGCTGTGTTTGGCGGTTTGATCCGATTTTGAACTCTTGGAGTGAAGTTAGTTCTATGTTGGCGAGTCGGGCTTATTCCAAAACAGGTGTATTGAATAAGAAACTATATGTTGTTGGAGGGGTTGATCGGGGACGGGGAGGTTTATCTCCTCTTCAGTCAGCTGAGGTTTATGATCCAAGCACGGATGCTTGGTCAGAGGTTCCGAGCATGCCTTTCTCAAAGGCGCAAGTGTTGCCAAATGCGTTTTTGGCTGACTTACTAAAGCCTATTGCCACAGGAATGACTTGCTACAACGGTAGGTTATGTGTTCCTCAGAGTTTATACTCTTGGCCTTTCTTTGTTGATGTTGGAGGAGAGGTTTATGATCCCGAGACAAATCTCTGGGTTGAAATGCCGTCTGGTATGGGTGAAGGTTGGCCTGCGAGGCAAGCAGGTACAAAACTGAGTGTTGTGGTGGATGGTGAGTTATACGCTTTTGATCCTTCTTCTTCGATGGAGAACGGAAAGATTAAAGTGTATGATCAAAAGGAAGATACTTGGAAGGTTGTTATTGGGGAAGTCCCTGTGTATGACTTAACAGATTCAGAATCTCCTTATTTGCTTGCTGGGTTTCATGGCAAGCTTCATTTCATTACTAGAGACCCTAATCATAACGTTACAGTCTTACGAGCTGATGTCCCCAACATCCCAGTCTCCTCATCATCATCTAGCTCCAGTTCTGTTTCAATCCCACACTTAAAGACCAATGCACCTAACAAGTCAGACACTGTTACATGGAAACTCATTGCAACCAAGGACTTTGGTGCTGCTGAACTTGTTAGCTGCCAAGTTATAGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

475

Amino Acids

52.53

Weight (kDa)

6.29

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 44 - 84 6.6e-09 F-box domain
F-box-like PF12937 44 - 82 1.6e-07 F-box-like
Kelch_FKB95 PF25210 164 - 404 2e-21 FKB95, Kelch-repeats domain
Kelch_1 PF01344 170 - 214 3.5e-12 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 173 - 265 6.7e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 179 - 268 2.2e-08 Calicin, beta-propeller domain
Kelch_1 PF01344 218 - 266 8.2e-13 Kelch motif
Kelch_2 PF07646 218 - 266 5.8e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 350
AciI CCGC 1 cut(s) 598
AclI AACGTT 1 cut(s) 1239
AclWI GGATC 5 cut(s) 335, 599, 752, 944, 1058
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 2 cut(s) 81, 722
AfaI GTAC 1 cut(s) 1021
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 5 cut(s) 66, 616, 679, 974, 1311
AhdI GACNNNNNGTC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 950, 1218, 1282
AlwI GGATC 5 cut(s) 335, 599, 752, 944, 1058
AlwNI CAGNNNCTG 1 cut(s) 1352
Ama87I CYCGRG 2 cut(s) 193, 953
AoxI GGCC 2 cut(s) 914, 1001
ApeKI GCWGC 2 cut(s) 1391, 1407
ApoI RAATTY 1 cut(s) 183
AspLEI GCGC 2 cut(s) 524, 811
AsuHPI GGTGA 2 cut(s) 1004, 1058
AvaI CYCGRG 2 cut(s) 193, 953
BbsI GAAGAC 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 1378, 1394
BccI CCATC 3 cut(s) 533, 1037, 1072
BceAI ACGGC 2 cut(s) 493, 964
BclI TGATCA 1 cut(s) 1105
BcoDI GTCTC 3 cut(s) 950, 1218, 1282
BfaI CTAG 7 cut(s) 171, 180, 405, 479, 570, 1221, 1293
BfuAI ACCTGC 1 cut(s) 1007
BglI GCCNNNNNGGC 1 cut(s) 1009
BisI GCNGC 2 cut(s) 1392, 1408
BlsI GCNGC 2 cut(s) 1393, 1409
BmeRI GACNNNNNGTC 1 cut(s) 306
BmeT110I CYCGRG 2 cut(s) 193, 953
BmiI GGNNCC 1 cut(s) 786
BmrI ACTGGG 1 cut(s) 1268
BmsI GCATC 1 cut(s) 760
BmuI ACTGGG 1 cut(s) 1268
BpiI GAAGAC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpmI CTGGAG 1 cut(s) 1282
Bpu10I CCTNAGC 1 cut(s) 747
BsaI GGTCTC 1 cut(s) 1218
BsaJI CCNNGG 1 cut(s) 1377
BsaXI ACNNNNNCTCC 2 cut(s) 927, 957
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 1274, 1299
Bse3DI GCAATG 1 cut(s) 1368
BseDI CCNNGG 1 cut(s) 1377
BseGI GGATG 3 cut(s) 775, 1048, 1269
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 1368
BseMII CTCAG 6 cut(s) 234, 270, 489, 738, 911, 1019
BseNI ACTGG 2 cut(s) 1274, 1299
BseRI GAGGAG 6 cut(s) 296, 484, 484, 723, 951, 1270
BseXI GCAGC 2 cut(s) 1378, 1394
BseYI CCCAGC 1 cut(s) 1190
BshFI GGCC 2 cut(s) 916, 1003
BsiHKCI CYCGRG 2 cut(s) 193, 953
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 4 cut(s) 503, 729, 1130, 1247
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 3 cut(s) 950, 1218, 1282
BsmFI GGGAC 4 cut(s) 503, 729, 1130, 1247
BsnI GGCC 2 cut(s) 916, 1003
Bso31I GGTCTC 1 cut(s) 1218
BsoBI CYCGRG 2 cut(s) 193, 953
Bsp143I GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
BspACI CCGC 1 cut(s) 598
BspANI GGCC 2 cut(s) 916, 1003
BspCNI CTCAG 6 cut(s) 235, 271, 490, 739, 910, 1020
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 786
BspMI ACCTGC 1 cut(s) 1007
BspPI GGATC 5 cut(s) 335, 599, 752, 944, 1058
BspTNI GGTCTC 1 cut(s) 1218
BsrDI GCAATG 1 cut(s) 1368
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 2 cut(s) 1274, 1299
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 1377
BssMI GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
BssT1I CCWWGG 1 cut(s) 1377
Bst4CI ACNGT 4 cut(s) 583, 881, 1246, 1354
Bst6I CTCTTC 3 cut(s) 108, 393, 741
BstAPI GCANNNNNTGC 2 cut(s) 367, 817
BstC8I GCNNGC 5 cut(s) 794, 1005, 1014, 1188, 1205
BstDEI CTNAG 6 cut(s) 243, 279, 498, 747, 897, 1028
BstF5I GGATG 3 cut(s) 775, 1048, 1269
BstHHI GCGC 2 cut(s) 524, 811
BstKTI GATC 8 cut(s) 227, 343, 607, 712, 760, 952, 1066, 1108
BstMAI GTCTC 3 cut(s) 950, 1218, 1282
BstMBI GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
BstMWI GCNNNNNNNGC 8 cut(s) 367, 376, 530, 653, 817, 833, 1009, 1013
BstNSI RCATGY 1 cut(s) 796
BstV1I GCAGC 2 cut(s) 1378, 1394
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 2 cut(s) 916, 1003
BtsCI GGATG 3 cut(s) 775, 1048, 1269
BtsIMutI CAGTG 2 cut(s) 588, 1350
BveI ACCTGC 1 cut(s) 1007
Cac8I GCNNGC 5 cut(s) 794, 1005, 1014, 1188, 1205
CaiI CAGNNNCTG 1 cut(s) 1352
CciI TCATGA 1 cut(s) 310
CfoI GCGC 2 cut(s) 524, 811
Cfr10I RCCGGY 1 cut(s) 379
Csp6I GTAC 1 cut(s) 1020
CviAII CATG 4 cut(s) 311, 793, 1199, 1359
CviQI GTAC 1 cut(s) 1020
DdeI CTNAG 6 cut(s) 243, 279, 498, 747, 897, 1028
DpnI GATC 8 cut(s) 226, 342, 606, 711, 759, 951, 1065, 1107
DpnII GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
DriI GACNNNNNGTC 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 108, 393, 741
Eam1105I GACNNNNNGTC 1 cut(s) 306
EarI CTCTTC 3 cut(s) 108, 393, 741
Eco130I CCWWGG 1 cut(s) 1377
Eco31I GGTCTC 1 cut(s) 1218
Eco32I GATATC 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 81, 722
Eco88I CYCGRG 2 cut(s) 193, 953
EcoRV GATATC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 1377
ErhI CCWWGG 1 cut(s) 1377
FaeI CATG 4 cut(s) 314, 796, 1202, 1362
FaqI GGGAC 4 cut(s) 503, 729, 1130, 1247
FatI CATG 4 cut(s) 310, 792, 1198, 1358
FbaI TGATCA 1 cut(s) 1105
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 2 cut(s) 1392, 1408
FokI GGATG 3 cut(s) 782, 1055, 1256
Fsp4HI GCNGC 2 cut(s) 1392, 1408
FspBI CTAG 7 cut(s) 171, 180, 405, 479, 570, 1221, 1293
GlaI GCGC 2 cut(s) 523, 810
GluI GCNGC 2 cut(s) 1392, 1408
GsaI CCCAGC 1 cut(s) 1194
GsuI CTGGAG 1 cut(s) 1282
HaeIII GGCC 2 cut(s) 916, 1003
HapII CCGG 1 cut(s) 380
HhaI GCGC 2 cut(s) 524, 811
Hin1II CATG 4 cut(s) 314, 796, 1202, 1362
Hin6I GCGC 2 cut(s) 522, 809
HinP1I GCGC 2 cut(s) 522, 809
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 2 cut(s) 320, 1205
HinfI GANTC 9 cut(s) 46, 71, 130, 163, 401, 491, 649, 1166, 1172
HpaII CCGG 1 cut(s) 380
HphI GGTGA 2 cut(s) 1004, 1058
Hpy166II GTNNAC 3 cut(s) 300, 351, 563
Hpy188III TCNNGA 5 cut(s) 50, 143, 311, 405, 953
Hpy8I GTNNAC 3 cut(s) 300, 351, 563
HpyAV CCTTC 3 cut(s) 989, 1077, 1120
HpyCH4III ACNGT 4 cut(s) 583, 881, 1246, 1354
HpyCH4IV ACGT 2 cut(s) 54, 1239
HpyCH4V TGCA 2 cut(s) 1334, 1373
HpyF10VI GCNNNNNNNGC 8 cut(s) 367, 376, 530, 653, 817, 833, 1009, 1013
HpyF3I CTNAG 6 cut(s) 243, 279, 498, 747, 897, 1028
HpySE526I ACGT 2 cut(s) 54, 1239
Hsp92II CATG 4 cut(s) 314, 796, 1202, 1362
HspAI GCGC 2 cut(s) 522, 809
Ksp22I TGATCA 1 cut(s) 1105
Kzo9I GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
LmnI GCTCC 2 cut(s) 471, 1301
Lsp1109I GCAGC 2 cut(s) 1378, 1394
LweI GCATC 1 cut(s) 760
MaeI CTAG 7 cut(s) 171, 180, 405, 479, 570, 1221, 1293
MaeII ACGT 2 cut(s) 54, 1239
MaeIII GTNAC 3 cut(s) 188, 1240, 1354
MalI GATC 8 cut(s) 226, 342, 606, 711, 759, 951, 1065, 1107
MboI GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
MflI RGATCY 1 cut(s) 340
MluCI AATT 1 cut(s) 183
MlyI GAGTC 4 cut(s) 55, 410, 485, 658
MmeI TCCRAC 2 cut(s) 679, 913
MseI TTAA 4 cut(s) 450, 1095, 1160, 1322
MslI CAYNNNNRTG 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 1 cut(s) 380
MwoI GCNNNNNNNGC 8 cut(s) 367, 376, 530, 653, 817, 833, 1009, 1013
NdeII GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
NlaIII CATG 4 cut(s) 314, 796, 1202, 1362
NlaIV GGNNCC 1 cut(s) 786
NspI RCATGY 1 cut(s) 796
PaeI GCATGC 1 cut(s) 796
PaeR7I CTCGAG 1 cut(s) 193
PagI TCATGA 1 cut(s) 310
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 233
PfeI GAWTC 5 cut(s) 71, 130, 163, 1166, 1172
PkrI GCNGC 2 cut(s) 1393, 1409
PleI GAGTC 4 cut(s) 54, 409, 485, 657
PpsI GAGTC 4 cut(s) 54, 409, 485, 657
Psp1406I AACGTT 1 cut(s) 1239
PspFI CCCAGC 1 cut(s) 1190
PspN4I GGNNCC 1 cut(s) 786
PspXI VCTCGAGB 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 1352
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 1021
RsaNI GTAC 1 cut(s) 1020
RseI CAYNNNNRTG 1 cut(s) 863
SaqAI TTAA 4 cut(s) 450, 1095, 1160, 1322
SatI GCNGC 2 cut(s) 1392, 1408
Sau3AI GATC 8 cut(s) 224, 340, 604, 709, 757, 949, 1063, 1105
SchI GAGTC 4 cut(s) 55, 410, 485, 658
SfaNI GCATC 1 cut(s) 760
Sfr274I CTCGAG 1 cut(s) 193
SlaI CTCGAG 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SphI GCATGC 1 cut(s) 796
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 598
SspMI CTAG 7 cut(s) 171, 180, 405, 479, 570, 1221, 1293
StyI CCWWGG 1 cut(s) 1377
TaaI ACNGT 4 cut(s) 583, 881, 1246, 1354
TaiI ACGT 2 cut(s) 57, 1242
TaqI TCGA 3 cut(s) 194, 236, 1076
TasI AATT 1 cut(s) 183
TfiI GAWTC 5 cut(s) 71, 130, 163, 1166, 1172
Tru1I TTAA 4 cut(s) 450, 1095, 1160, 1322
Tru9I TTAA 4 cut(s) 450, 1095, 1160, 1322
TscAI CASTG 2 cut(s) 588, 1357
TseI GCWGC 2 cut(s) 1391, 1407
TspDTI ATGAA 5 cut(s) 123, 408, 1187, 1199, 1204
TspGWI ACGGA 2 cut(s) 782, 1101
TspRI CASTG 2 cut(s) 588, 1357
XapI RAATTY 1 cut(s) 183
XbaI TCTAGA 1 cut(s) 404
XceI RCATGY 1 cut(s) 796
XhoI CTCGAG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 7 cut(s) 171, 180, 405, 479, 570, 1221, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.