FvH4_5g38161

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006242
Physical Location & Seq
Forward (+)
28208078 .. 28211651
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38161.t4

Sequence Viewer

Length: 1437 bp
ATGGGGGCTATTTTGAGTTTGGGCAGTCCCAAATCTGGGACAAAAGATTATCATGAGGTCACTCAGAATGATACCTGTAAGCGGCAAAGAATGTCATCACCTACTTTTGAGGAGAGCCAAAGATTAATTCCCAATCTTCCTGATGAGCTCTCAATCCAAATTATTGCTAGACTTCCTAGAATTTGCTACCCCCATATCAGGCTGGTGTCGCAGAAGTGGAAGGGAACTGTTACAAGCTCTGAACTATTTAAGTTGAGAAAAGAGCTCGGAAAAACAGAAGAATGGCTATACTTGTTGACCAAAATTGAAGAAGATAAACTCTTGTGGCATGCTTTTGATCCCCTGTCAAGGAAGTGGCAGAGGCTACCTCGGATGCCAAATGTAGTTTATGAAGAAGAGTATACTAGAGGTTTGCCTTGGTTTTCGATATGGAATATGGTTGGGCCAAGCATCAAATTTGCTGATACTATTAGAGGCTGGCTTGGAAGAAAGAACTCATTTGATCAAATGCCATTTTGTGGTTGTGCTATTGGTGCTCTTGATGGATGCCTCTATGTTTTAGGTGGATTCTGTAAAACTTCTACTATGAAATGTGTGTGGAGATATAATCCAATTCAAAATACATGGAGCGAAGTGACAGCCATGTCCACAAGTAGAGCCTATGGTAAAACAGGCATTCTGAATAACAAGCTCTATGTTGTTGGAGGGGTTAGTCGAGGCCAAGGTGGATTAGCACCTCTTCAATCTGCTGAAGTTTTTGATCCCTCCACAAGTACGTGGTCTGAAGTACCAAGCATGCCATTCTCAAAAGCTCAAGCCTTGCCTACTGCCTTCTTGACTGACATGCTAAAGCCTATTGCCACCGGGTTGACTCCATACATGGGAAGGTTATGTGTGTCCCAGAGTCTGTACTCATGGCCCTTTTTTGTTGATGTTGGAGGAGAAATTTATGATCCTAAGACAAATTCATGGATTGAAATGCCAAATGGCATGGGAGACGGTTGGCCTGCTCGGCAAGCTGGTTCAAAGTTGAGTGTTGTGGTAGATGGTGAATTGTATGCTTTTGATCCTTCAAGTTCTATGGATAGTGGTAAGATCAAGGTGTATGATCAACAGGAAGATGCTTGGAAAGTTGTTATACGGAAACTCCCCATGTGTGATTTGGCTGGTTCAGAATCTCCATATTTACTTGCTGGTTTTCATGGAAAGCTTCATGTTATAACAAAAGATATTAATCATGAAATCGCTGTTTTGCGGGCTGATCTACGGAACGATTTGGGTTCACTGTCGTCAAGCTCGTGTTCTGTCATAGCCCGATCCTTATTAGACGAACATCCCGAGTCACTGGCAGAATCGGATACAGTTGTGTGGAAAGCCATTGGCACCAAGGATTTTGGGCCAAGTGAATTGGTCAGTTGTCAAGTTATTGACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

479

Amino Acids

53.33

Weight (kDa)

6.67

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 43 - 84 1.6e-07 F-box domain
Kelch_FKB95 PF25210 165 - 380 1.1e-17 FKB95, Kelch-repeats domain
Kelch_1 PF01344 171 - 216 8e-13 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 179 - 266 2.2e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 180 - 268 1e-07 Calicin, beta-propeller domain
Kelch_1 PF01344 219 - 267 1.9e-11 Kelch motif
Kelch_2 PF07646 224 - 267 7.9e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1220
AasI GACNNNNNNGTC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 1382
AccB7I CCANNNNNTGG 1 cut(s) 518
AccI GTMKAC 1 cut(s) 401
AciI CCGC 2 cut(s) 82, 1255
AclWI GGATC 5 cut(s) 332, 755, 947, 1061, 1311
AcsI RAATTY 4 cut(s) 180, 455, 945, 964
AcuI CTGAAG 2 cut(s) 771, 804
AfaI GTAC 3 cut(s) 775, 789, 911
AfiI CCNNNNNNNGG 7 cut(s) 35, 36, 81, 198, 348, 518, 881
AgsI TTSAA 6 cut(s) 308, 617, 743, 977, 1026, 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 8 cut(s) 148, 237, 265, 691, 812, 1019, 1210, 1296
AluI AGCT 8 cut(s) 148, 237, 265, 691, 812, 1019, 1210, 1296
Alw21I GWGCWC 3 cut(s) 150, 267, 538
Alw26I GTCTC 1 cut(s) 990
AlwI GGATC 5 cut(s) 332, 755, 947, 1061, 1311
AlwNI CAGNNNCTG 1 cut(s) 907
Ama87I CYCGRG 1 cut(s) 1337
AoxI GGCC 5 cut(s) 443, 718, 917, 1004, 1397
ApoI RAATTY 4 cut(s) 180, 455, 945, 964
AseI ATTAAT 2 cut(s) 125, 1233
AspS9I GGNCC 3 cut(s) 443, 918, 1397
AsuC2I CCSGG 1 cut(s) 865
AsuHPI GGTGA 2 cut(s) 90, 1061
AvaI CYCGRG 1 cut(s) 1337
BaeI ACNNNNGTAYC 2 cut(s) 1350, 1383
BanI GGYRCC 1 cut(s) 1382
BanII GRGCYC 2 cut(s) 150, 267
BauI CACGAG 1 cut(s) 1297
Bbv12I GWGCWC 3 cut(s) 150, 267, 538
BccI CCATC 2 cut(s) 536, 1040
BciVI GTATCC 1 cut(s) 1351
BclI TGATCA 2 cut(s) 502, 1108
BcnI CCSGG 1 cut(s) 865
BcoDI GTCTC 1 cut(s) 990
BfaI CTAG 3 cut(s) 168, 177, 405
BfuI GTATCC 1 cut(s) 1351
BglI GCCNNNNNGGC 1 cut(s) 1012
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 865
BmeT110I CYCGRG 1 cut(s) 1337
BmgT120I GGNCC 3 cut(s) 443, 918, 1397
BmiI GGNNCC 1 cut(s) 1384
BmrFI CCNGG 1 cut(s) 865
BmsI GCATC 4 cut(s) 363, 459, 536, 1111
BplI GAGNNNNNCTC 2 cut(s) 352, 384
BpuEI CTTGAG 1 cut(s) 798
BpuMI CCSGG 1 cut(s) 865
BsaAI YACGTR 1 cut(s) 777
BsaBI GATNNNNATC 1 cut(s) 1233
BsaJI CCNNGG 4 cut(s) 368, 416, 721, 1386
BsaXI ACNNNNNCTCC 2 cut(s) 1131, 1161
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 36, 81, 198, 348, 518, 881
Bse1I ACTGG 1 cut(s) 1350
Bse8I GATNNNNATC 1 cut(s) 1233
BseDI CCNNGG 4 cut(s) 368, 416, 721, 1386
BseGI GGATG 3 cut(s) 378, 551, 1333
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 7 cut(s) 35, 36, 81, 198, 348, 518, 881
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 1350
BseRI GAGGAG 2 cut(s) 125, 954
BshFI GGCC 5 cut(s) 445, 720, 919, 1006, 1399
BshNI GGYRCC 1 cut(s) 1382
BsiHKAI GWGCWC 3 cut(s) 150, 267, 538
BsiHKCI CYCGRG 1 cut(s) 1337
BsiSI CCGG 1 cut(s) 864
BslFI GGGAC 3 cut(s) 12, 52, 883
BslI CCNNNNNNNGG 7 cut(s) 35, 36, 81, 198, 348, 518, 881
BsmAI GTCTC 1 cut(s) 990
BsmBI CGTCTC 1 cut(s) 990
BsmFI GGGAC 3 cut(s) 12, 52, 883
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 5 cut(s) 445, 720, 919, 1006, 1399
BsoBI CYCGRG 1 cut(s) 1337
Bsp1286I GDGCHC 3 cut(s) 150, 267, 538
Bsp143I GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
BspACI CCGC 2 cut(s) 82, 1255
BspANI GGCC 5 cut(s) 445, 720, 919, 1006, 1399
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 2 cut(s) 52, 1237
BspLI GGNNCC 1 cut(s) 1384
BspPI GGATC 5 cut(s) 332, 755, 947, 1061, 1311
BspT107I GGYRCC 1 cut(s) 1382
BsrI ACTGG 1 cut(s) 1350
BssECI CCNNGG 4 cut(s) 368, 416, 721, 1386
BssMI GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
BssNAI GTATAC 1 cut(s) 402
BssSI CACGAG 1 cut(s) 1297
BssT1I CCWWGG 3 cut(s) 416, 721, 1386
Bst1107I GTATAC 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 1297
Bst4CI ACNGT 4 cut(s) 229, 1001, 1287, 1363
Bst6I CTCTTC 2 cut(s) 390, 744
BstBAI YACGTR 1 cut(s) 777
BstC8I GCNNGC 6 cut(s) 330, 479, 797, 1008, 1017, 1257
BstDEI CTNAG 2 cut(s) 63, 957
BstF5I GGATG 3 cut(s) 378, 551, 1333
BstKTI GATC 9 cut(s) 340, 505, 763, 955, 1069, 1098, 1111, 1264, 1319
BstMAI GTCTC 1 cut(s) 990
BstMBI GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
BstMWI GCNNNNNNNGC 4 cut(s) 208, 533, 1012, 1016
BstNSI RCATGY 3 cut(s) 332, 799, 847
BstSCI CCNGG 1 cut(s) 863
BstZ17I GTATAC 1 cut(s) 402
BsuI GTATCC 1 cut(s) 1351
BsuRI GGCC 5 cut(s) 445, 720, 919, 1006, 1399
BtsCI GGATG 3 cut(s) 378, 551, 1333
BtsIMutI CAGTG 2 cut(s) 1283, 1343
Cac8I GCNNGC 6 cut(s) 330, 479, 797, 1008, 1017, 1257
CaiI CAGNNNCTG 1 cut(s) 907
CciI TCATGA 2 cut(s) 52, 1237
Cfr13I GGNCC 3 cut(s) 443, 918, 1397
Csp6I GTAC 3 cut(s) 774, 788, 910
CviQI GTAC 3 cut(s) 774, 788, 910
DdeI CTNAG 2 cut(s) 63, 957
DpnI GATC 9 cut(s) 339, 504, 762, 954, 1068, 1097, 1110, 1263, 1318
DpnII GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
DrdI GACNNNNNNGTC 1 cut(s) 643
DseDI GACNNNNNNGTC 1 cut(s) 643
Eam1104I CTCTTC 2 cut(s) 390, 744
EarI CTCTTC 2 cut(s) 390, 744
Ecl136II GAGCTC 2 cut(s) 148, 265
Eco130I CCWWGG 3 cut(s) 416, 721, 1386
Eco24I GRGCYC 2 cut(s) 150, 267
Eco53kI GAGCTC 2 cut(s) 148, 265
Eco57I CTGAAG 2 cut(s) 771, 804
Eco88I CYCGRG 1 cut(s) 1337
EcoICRI GAGCTC 2 cut(s) 148, 265
EcoT14I CCWWGG 3 cut(s) 416, 721, 1386
EcoT38I GRGCYC 2 cut(s) 150, 267
ErhI CCWWGG 3 cut(s) 416, 721, 1386
Esp3I CGTCTC 1 cut(s) 990
FaqI GGGAC 3 cut(s) 12, 52, 883
FauI CCCGC 1 cut(s) 1248
FbaI TGATCA 2 cut(s) 502, 1108
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 3 cut(s) 385, 558, 1320
FriOI GRGCYC 2 cut(s) 150, 267
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 3 cut(s) 168, 177, 405
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 5 cut(s) 445, 720, 919, 1006, 1399
HapII CCGG 1 cut(s) 864
HincII GTYRAC 2 cut(s) 297, 870
HindII GTYRAC 2 cut(s) 297, 870
HindIII AAGCTT 1 cut(s) 1208
HinfI GANTC 6 cut(s) 567, 871, 904, 1175, 1340, 1352
HpaII CCGG 1 cut(s) 864
HphI GGTGA 2 cut(s) 90, 1061
Hpy166II GTNNAC 5 cut(s) 297, 402, 648, 870, 1283
Hpy188I TCNGA 8 cut(s) 66, 241, 269, 372, 681, 784, 1174, 1357
Hpy188III TCNNGA 6 cut(s) 53, 140, 539, 835, 1238, 1337
Hpy8I GTNNAC 5 cut(s) 297, 402, 648, 870, 1283
HpyAV CCTTC 4 cut(s) 214, 841, 879, 1080
HpyCH4III ACNGT 4 cut(s) 229, 1001, 1287, 1363
HpyCH4IV ACGT 1 cut(s) 776
HpyF10VI GCNNNNNNNGC 4 cut(s) 208, 533, 1012, 1016
HpyF3I CTNAG 2 cut(s) 63, 957
HpySE526I ACGT 1 cut(s) 776
Ksp22I TGATCA 2 cut(s) 502, 1108
Kzo9I GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
LmnI GCTCC 1 cut(s) 627
LweI GCATC 4 cut(s) 363, 459, 536, 1111
MaeI CTAG 3 cut(s) 168, 177, 405
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 4 cut(s) 58, 229, 634, 1341
MalI GATC 9 cut(s) 339, 504, 762, 954, 1068, 1097, 1110, 1263, 1318
MboI GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
MboII GAAGA 9 cut(s) 128, 290, 320, 323, 404, 407, 498, 731, 1130
MhlI GDGCHC 3 cut(s) 150, 267, 538
MlyI GAGTC 3 cut(s) 865, 913, 1349
MmeI TCCRAC 2 cut(s) 682, 916
MseI TTAA 3 cut(s) 125, 249, 1233
MspI CCGG 1 cut(s) 864
MspR9I CCNGG 1 cut(s) 865
Mva1269I GAATGC 1 cut(s) 675
MwoI GCNNNNNNNGC 4 cut(s) 208, 533, 1012, 1016
NciI CCSGG 1 cut(s) 865
NdeII GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
NlaIV GGNNCC 1 cut(s) 1384
NmeAIII GCCGAG 1 cut(s) 991
NmuCI GTSAC 3 cut(s) 58, 634, 1341
NspI RCATGY 3 cut(s) 332, 799, 847
PaeI GCATGC 2 cut(s) 332, 799
PagI TCATGA 2 cut(s) 52, 1237
PcsI WCGNNNNNNNCGW 2 cut(s) 1295, 1335
PctI GAATGC 1 cut(s) 675
PfeI GAWTC 3 cut(s) 567, 1175, 1352
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 3 cut(s) 865, 912, 1348
PpsI GAGTC 3 cut(s) 865, 912, 1348
Ppu21I YACGTR 1 cut(s) 777
PshBI ATTAAT 2 cut(s) 125, 1233
PsiI TTATAA 1 cut(s) 1220
Psp124BI GAGCTC 2 cut(s) 150, 267
PspN4I GGNNCC 1 cut(s) 1384
PspPI GGNCC 3 cut(s) 443, 918, 1397
PstNI CAGNNNCTG 1 cut(s) 907
RsaI GTAC 3 cut(s) 775, 789, 911
RsaNI GTAC 3 cut(s) 774, 788, 910
SacI GAGCTC 2 cut(s) 150, 267
SaqAI TTAA 3 cut(s) 125, 249, 1233
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 9 cut(s) 337, 502, 760, 952, 1066, 1095, 1108, 1261, 1316
Sau96I GGNCC 3 cut(s) 443, 918, 1397
SchI GAGTC 3 cut(s) 865, 913, 1349
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 3 cut(s) 150, 267, 538
SfaNI GCATC 4 cut(s) 363, 459, 536, 1111
SmlI CTYRAG 1 cut(s) 813
SmoI CTYRAG 1 cut(s) 813
SphI GCATGC 2 cut(s) 332, 799
SsiI CCGC 2 cut(s) 82, 1255
SspMI CTAG 3 cut(s) 168, 177, 405
SstI GAGCTC 2 cut(s) 150, 267
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 3 cut(s) 416, 721, 1386
TaaI ACNGT 4 cut(s) 229, 1001, 1287, 1363
TaiI ACGT 1 cut(s) 779
TaqI TCGA 2 cut(s) 425, 715
TatI WGTACW 1 cut(s) 909
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 3 cut(s) 567, 1175, 1352
Tru1I TTAA 3 cut(s) 125, 249, 1233
Tru9I TTAA 3 cut(s) 125, 249, 1233
TscAI CASTG 2 cut(s) 1290, 1350
TseFI GTSAC 3 cut(s) 58, 634, 1341
Tsp45I GTSAC 3 cut(s) 58, 634, 1341
TspDTI ATGAA 6 cut(s) 405, 602, 957, 1190, 1202, 1254
TspGWI ACGGA 2 cut(s) 1156, 1282
TspRI CASTG 2 cut(s) 1290, 1350
Van91I CCANNNNNTGG 1 cut(s) 518
VspI ATTAAT 2 cut(s) 125, 1233
XapI RAATTY 4 cut(s) 180, 455, 945, 964
XceI RCATGY 3 cut(s) 332, 799, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 1159
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 3 cut(s) 168, 177, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.