Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005008.1

Orthogroup ID

OG0016524

Physical Location & Seq

Genomic Coordinates Reverse (-)

24440 .. 26241

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005008.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggcaacccaagatttggttgaggtcaaattcagattatccgatggcaccgacataggtccacacaagtatagcccagctgctactgtagcatcactcaaagagaaaatacttacacaatggcccaaagagaaagaaaatggtccaaggacgataaatgatttgaagcttattaatgcgggaaagatactggaaaacaacaggacgcttgctgattctagacttccagttggtgaactcccaggaggtctcatcactatgcatgtggttgtgcgtattcctgttgcagacaaaaagagtgataaattgcagaatgattcaccggaaacacctcgatgttcatgcacaatattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rad60-SLD_2

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

8.6

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22050
fragaria_vesca	FvH4_5g38170
malus_domestica	MD08G1176300.v1.1 MD15G1362100.v1.1
prunus_persica	Prupe.1G510100_v2.0.a1
pyrus_communis	pycom08g15130 pycom15g32470
rosa_chinensis	RchiOBHm_Chr7g0240171
rosa_laevigata	RLG00000000693
rosa_multiflora	Rmu_sc0005008.1_g000005
rosa_roxburghii	Rroxscaffold_3G00220350
rosa_rugosa	Rorug07G0333900
rosa_samantha	Rh7CG504200
rosa_wichuraiana	Rw7G040850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	16
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	2 cut(s)	80, 169
AluI	AGCT	2 cut(s)	80, 169
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	174
AspS9I	GGNCC	3 cut(s)	59, 123, 143
AsuHPI	GGTGA	2 cut(s)	245, 312
AvaII	GGWCC	2 cut(s)	59, 143
BanI	GGYRCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	38
BcgI	CGANNNNNNTGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	59, 143
BmgT120I	GGNCC	3 cut(s)	59, 123, 143
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	101
BoxI	GACNNNNGTC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	146, 241
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	195, 227
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	146, 241
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	2 cut(s)	195, 227
BseXI	GCAGC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	195, 227
BssECI	CCNNGG	2 cut(s)	146, 241
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	59, 123, 143
CseI	GACGC	1 cut(s)	214
CviAII	CATG	2 cut(s)	263, 342
CviJI	RGCY	4 cut(s)	75, 80, 124, 169
CviKI_1	RGCY	4 cut(s)	75, 80, 124, 169
Eco130I	CCWWGG	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	59, 143
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	2 cut(s)	266, 345
FaiI	YATR	5 cut(s)	56, 72, 260, 264, 343
FatI	CATG	2 cut(s)	262, 341
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	266, 345
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	215, 317
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	2 cut(s)	245, 312
Hpy166II	GTNNAC	2 cut(s)	62, 236
Hpy188I	TCNGA	2 cut(s)	35, 43
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	2 cut(s)	62, 236
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	4 cut(s)	262, 287, 310, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	266, 345
LpnPI	CCDG	8 cut(s)	90, 176, 187, 228, 240, 255, 294, 336
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	219
MluCI	AATT	2 cut(s)	29, 305
MnlI	CCTC	3 cut(s)	16, 239, 342
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	257, 334
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	266, 345
NlaIV	GGNNCC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	215, 317
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	82
PshAI	GACNNNNGTC	1 cut(s)	57
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	59, 123, 143
PvuII	CAGCTG	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	257, 334
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	3 cut(s)	59, 123, 143
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	6 cut(s)	27, 61, 82, 171, 250, 334
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	59, 143
SmiMI	CAYNNNNRTG	2 cut(s)	257, 334
Sse9I	AATT	2 cut(s)	29, 305
SsiI	CCGC	1 cut(s)	179
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	334
TasI	AATT	2 cut(s)	29, 305
TfiI	GAWTC	2 cut(s)	215, 317
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	330
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	59, 143
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	218
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.