Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006984

Physical Location & Seq

Genomic Coordinates Forward (+)

8336593 .. 8338827

Gene Structure 2235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGATTGTCATTCGCCAAGCTTTTTAGCAGGCTTTTTGCCAAGAAGGAGATGAGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGAGATTGTAACCACCATTCCCACTATTGGGTTCAATGTGGAGACTGTGGAGTACAAGAACATCAGTTTCACAGTGTGGGATGTCGGCGGTCAGGATAAGATCCGTCCCTTGTGGAGGCATTACTTCCAGAACACCCAAGGTCTTATCTTTGTGGTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCTAGAGATGAATTGCACCGAATGTTGAATGAGGACGAGCTGCGTGATGCTGTTCTGCTCGTATTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAGATCACGGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACTTCAGGCGAGGGGCTTTACGAAGGTCTTGACTGGTTGTCCAACAACATTGCCGGCAAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0008047 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0016004 GO:0016020 GO:0017076 GO:0019001 GO:0030234 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050790 GO:0050896 GO:0060229 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098772 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

181

Amino Acids

20.59

Weight (kDa)

6.43

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 177	1.7e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	4.8e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	8.3e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 169	6e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.6e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	45 - 111	7.9e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT2G47170 AT2G47170 AT2G47170 AT3G62290 AT3G62290 AT3G62290
prunus_persica	Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0426591
rosa_rugosa	Rorug04G0213800 Rorug04G0213900
rosa_samantha	Rh4AG268900 Rh4BG275200 Rh4CG289500
rosa_wichuraiana	Rw4G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	2 cut(s)	214, 393
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	468
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	3 cut(s)	104, 173, 461
AfiI	CCNNNNNNNGG	3 cut(s)	146, 147, 234
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	154, 334
AhdI	GACNNNNNGTC	1 cut(s)	517
AluBI	AGCT	6 cut(s)	22, 109, 115, 346, 410, 427
AluI	AGCT	6 cut(s)	22, 109, 115, 346, 410, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	155, 285, 437
AlwI	GGATC	2 cut(s)	214, 393
ApeKI	GCWGC	3 cut(s)	80, 346, 407
ApoI	RAATTY	1 cut(s)	57
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	67, 333, 419
BccI	CCATC	1 cut(s)	58
BcoDI	GTCTC	3 cut(s)	155, 285, 437
BfaI	CTAG	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	3 cut(s)	81, 347, 408
BlsI	GCNGC	3 cut(s)	82, 348, 409
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmsI	GCATC	2 cut(s)	67, 343
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	285, 437
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 147, 234
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	461, 518
Bse3DI	GCAATG	2 cut(s)	289, 528
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	2 cut(s)	205, 462
BseLI	CCNNNNNNNGG	3 cut(s)	146, 147, 234
BseMI	GCAATG	2 cut(s)	289, 528
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	461, 518
BseXI	GCAGC	3 cut(s)	67, 333, 419
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	146, 147, 234
BsmAI	GTCTC	3 cut(s)	155, 285, 437
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	409
Bso31I	GGTCTC	2 cut(s)	285, 437
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	219, 385, 414
BspACI	CCGC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	403
BspPI	GGATC	2 cut(s)	214, 393
BspTNI	GGTCTC	2 cut(s)	285, 437
BsrDI	GCAATG	2 cut(s)	289, 528
BsrFI	RCCGGY	1 cut(s)	533
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	461, 518
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	219, 385, 414
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	3 cut(s)	166, 193, 296
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	32, 535
BstDEI	CTNAG	1 cut(s)	411
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	205, 462
BstKTI	GATC	3 cut(s)	222, 388, 417
BstMAI	GTCTC	3 cut(s)	155, 285, 437
BstMBI	GATC	3 cut(s)	219, 385, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNSI	RCATGY	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	67, 333, 419
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BtsCI	GGATG	2 cut(s)	205, 462
BtsIMutI	CAGTG	2 cut(s)	198, 454
Cac8I	GCNNGC	2 cut(s)	32, 535
Cfr10I	RCCGGY	1 cut(s)	533
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	103, 172, 460
CviAII	CATG	1 cut(s)	474
CviJI	RGCY	9 cut(s)	22, 34, 109, 115, 308, 346, 410, 427, 496
CviKI_1	RGCY	9 cut(s)	22, 34, 109, 115, 308, 346, 410, 427, 496
CviQI	GTAC	3 cut(s)	103, 172, 460
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	221, 387, 416
DpnII	GATC	3 cut(s)	219, 385, 414
DraIII	CACNNNGTG	1 cut(s)	195
DriI	GACNNNNNGTC	1 cut(s)	517
Eam1105I	GACNNNNNGTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	256
Eco31I	GGTCTC	2 cut(s)	285, 437
Eco57I	CTGAAG	1 cut(s)	468
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	477
FaiI	YATR	2 cut(s)	401, 475
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	1 cut(s)	473
Fnu4HI	GCNGC	3 cut(s)	81, 347, 408
FokI	GGATG	2 cut(s)	212, 449
Fsp4HI	GCNGC	3 cut(s)	81, 347, 408
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	81, 347, 408
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	1 cut(s)	440
Hin1II	CATG	1 cut(s)	477
HindIII	AAGCTT	2 cut(s)	20, 425
HpaII	CCGG	1 cut(s)	534
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	63, 119
Hpy188III	TCNNGA	5 cut(s)	74, 212, 247, 466, 509
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	40, 497
HpyCH4III	ACNGT	3 cut(s)	166, 193, 296
HpyCH4V	TGCA	2 cut(s)	322, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	533
KroNI	GCCGGC	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	219, 385, 414
LpnPI	CCDG	9 cut(s)	16, 69, 197, 260, 368, 442, 471, 479, 499
Lsp1109I	GCAGC	3 cut(s)	67, 333, 419
LweI	GCATC	2 cut(s)	67, 343
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	127, 452
MalI	GATC	3 cut(s)	221, 387, 416
MboI	GATC	3 cut(s)	219, 385, 414
MflI	RGATCY	2 cut(s)	219, 385
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	2 cut(s)	57, 317
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	4 cut(s)	228, 298, 331, 484
MroNI	GCCGGC	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NaeI	GCCGGC	1 cut(s)	535
NdeII	GATC	3 cut(s)	219, 385, 414
NgoMIV	GCCGGC	1 cut(s)	533
NlaIII	CATG	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	477
PciI	ACATGT	1 cut(s)	473
PctI	GAATGC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	82, 348, 409
PscI	ACATGT	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	219, 385
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	104, 173, 461
RsaNI	GTAC	3 cut(s)	103, 172, 460
SatI	GCNGC	3 cut(s)	81, 347, 408
Sau3AI	GATC	3 cut(s)	219, 385, 414
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	24, 111, 117, 262, 348, 412, 429, 508
SfaNI	GCATC	2 cut(s)	67, 343
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	57, 317
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	166, 193, 296
TasI	AATT	2 cut(s)	57, 317
TatI	WGTACW	2 cut(s)	102, 171
TscAI	CASTG	2 cut(s)	198, 461
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	3 cut(s)	80, 346, 407
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	330, 416
TspGWI	ACGGA	3 cut(s)	212, 434, 434
TspRI	CASTG	2 cut(s)	198, 461
XagI	CCTNNNNNAGG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	1 cut(s)	477
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.