Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006984

Physical Location & Seq

Genomic Coordinates Reverse (-)

8728306 .. 8730893

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGGCTGTCTTTCACCAAACTGTTCAGCCGACTGTTTGCTAAGAAAGAGATGCGTATTCTTATGGTGGGTCTTGATGCTTCTGGTAAAACCACCATTTTGTACAAGCTCAAGTTAGGCGAAATTGTGACCACCATCCCTACCATTGGATTTAATGTGGAGACTGTGGAATATAAGAACATTAGCTTCACTGTCTGGGATGTTGGGGGTCAAGACAAGATTCGACCTCTATGGAGACACTACTTCCAGAACACACAAGGGCTGATCTTTGTGATCGACAGCAATGATCGAGATCGTGTTGTTGAAGCCAGAGATGAGATGCACAGGATGTTGAACGAGGACGAATTGAGGGAAGCTGTGCTTCTTGTGTTTGCAAACAAGCAAGATCTTCCCAATGCAATGAATGCTGCTGAGATCACAGATAAGCTCAACCTTCATTCTCTTCGGCAACGCCATTGGTACATCCAGAGTACATGCGCCACTTCTGGAGAAGGTTTGTACGAGGGATTGGACTGGCTTTCAAACAACATCACTAGCAAGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

183

Amino Acids

20.9

Weight (kDa)

6.43

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT2G47170 AT2G47170 AT2G47170 AT3G62290 AT3G62290 AT3G62290
prunus_persica	Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0426591
rosa_rugosa	Rorug04G0213800 Rorug04G0213900
rosa_samantha	Rh4AG268900 Rh4BG275200 Rh4CG289500
rosa_wichuraiana	Rw4G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	4 cut(s)	104, 461, 472, 500
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	305, 334, 522
AluBI	AGCT	4 cut(s)	109, 186, 356, 427
AluI	AGCT	4 cut(s)	109, 186, 356, 427
Alw26I	GTCTC	2 cut(s)	155, 229
ApeKI	GCWGC	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	7
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	155, 229
BfaI	CTAG	1 cut(s)	534
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
BmsI	GCATC	3 cut(s)	42, 67, 309
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	2 cut(s)	289, 405
Bse8I	GATNNNNATC	1 cut(s)	291
BseGI	GGATG	4 cut(s)	135, 205, 333, 462
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	289, 405
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	155, 229
BsmI	GAATGC	1 cut(s)	409
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
BspCNI	CTCAG	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	289, 405
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	518
BssMI	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
Bst4CI	ACNGT	4 cut(s)	24, 36, 166, 193
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	42, 411
BstF5I	GGATG	4 cut(s)	135, 205, 333, 462
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	6 cut(s)	267, 276, 289, 295, 388, 417
BstMAI	GTCTC	2 cut(s)	155, 229
BstMBI	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	477, 546
BstV1I	GCAGC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BtsCI	GGATG	4 cut(s)	135, 205, 333, 462
BtsIMutI	CAGTG	1 cut(s)	189
CfoI	GCGC	1 cut(s)	479
Csp6I	GTAC	4 cut(s)	103, 460, 471, 499
CviAII	CATG	2 cut(s)	474, 543
CviJI	RGCY	9 cut(s)	7, 30, 109, 186, 262, 308, 356, 427, 517
CviKI_1	RGCY	9 cut(s)	7, 30, 109, 186, 262, 308, 356, 427, 517
CviQI	GTAC	4 cut(s)	103, 460, 471, 499
DdeI	CTNAG	2 cut(s)	42, 411
DpnI	GATC	6 cut(s)	266, 275, 288, 294, 387, 416
DpnII	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
FaeI	CATG	2 cut(s)	477, 546
FaiI	YATR	5 cut(s)	65, 174, 232, 475, 544
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	2 cut(s)	473, 542
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	4 cut(s)	122, 212, 340, 449
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	507
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	477, 546
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	7
Hpy188III	TCNNGA	6 cut(s)	74, 212, 247, 290, 466, 486
HpyAV	CCTTC	2 cut(s)	443, 485
HpyCH4III	ACNGT	4 cut(s)	24, 36, 166, 193
HpyCH4V	TGCA	3 cut(s)	322, 374, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	42, 411
Hsp92II	CATG	2 cut(s)	477, 546
HspAI	GCGC	1 cut(s)	477
Kzo9I	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
LpnPI	CCDG	8 cut(s)	69, 181, 260, 310, 322, 471, 479, 499
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	3 cut(s)	42, 67, 309
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	6 cut(s)	266, 275, 288, 294, 387, 416
MboI	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
MboII	GAAGA	2 cut(s)	380, 434
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	2 cut(s)	123, 344
MnlI	CCTC	4 cut(s)	237, 331, 342, 496
MseI	TTAA	2 cut(s)	153, 547
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
NlaIII	CATG	2 cut(s)	477, 546
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	2 cut(s)	477, 546
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	4 cut(s)	104, 461, 472, 500
RsaNI	GTAC	4 cut(s)	103, 460, 471, 499
SaqAI	TTAA	2 cut(s)	153, 547
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	6 cut(s)	264, 273, 286, 292, 385, 414
SetI	ASST	7 cut(s)	111, 188, 229, 358, 429, 435, 496
SfaNI	GCATC	3 cut(s)	42, 67, 309
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	123, 344
SspMI	CTAG	1 cut(s)	534
TaaI	ACNGT	4 cut(s)	24, 36, 166, 193
TaqI	TCGA	3 cut(s)	223, 276, 289
TasI	AATT	2 cut(s)	123, 344
TatI	WGTACW	2 cut(s)	102, 470
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	153, 547
Tru9I	TTAA	2 cut(s)	153, 547
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	416, 425
TspRI	CASTG	1 cut(s)	196
XceI	RCATGY	2 cut(s)	477, 546
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.