Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006984

Physical Location & Seq

Genomic Coordinates Forward (+)

37112372 .. 37115365

Gene Structure 2994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGCGATACTCAAAACTTTTTTCCTTTCCACTCTTCTCCTCGCCTCAATCTCCTTCTCTCTTGCTTATCATCATGAGGATCCTTCCCAGCAGTTGGAGCAATGCCAGCGGCGATGCCGGGAGGAGATGCCGCGCGGACTTCAACAGCAGCAGTGCCAGCAAGAATGCAGAGAGCGGATGCAGCAGCAGGGAGGCCGCGGTGGCGGTAGCAGAACCCCGTTCTCTCGTGATCCTGAGCAGAAGTTTGAGCAGTGCGTGGAGAGTTGCCAGTCGAGGCAACACGGCCAGCAACAGCAGCAGCAATGCCGCCAACAATGCGGTCAACAAATGAGCCAGCACGAGCGCCAACAAATGTGCCAAAGACGTTGTCAGATGCAAGACAGTGGTCAGCAACAGTGCCAAAGAAGGTGCATGCAGCAGCTCGAGCAAGGAGAACTAGACATTAATACATCAAGAGATCCCGAACAAAAACTTGAGCAATGCCAACAGAGTTGCCAATCGAGGCAACAAGGCCAACAACAGCACCAGCAGTGCCGTCAACAATGCGCACAGCAATTGAGCCAGCGAGAGCGTCAACAAATCTGCCAAAGACGTTGTCAGATGCAAGACAGTGGTCAGCAACAGTGCCAAAAAAGGTGCATGCAGCAGCTCGAGCAAGGAGAACTAGACATTAACACATCAAGAGATCCCGAACAAAAACTTGAGCAGTGCCAACAGGGTTGCCAATCAAGGCAACAGGGCCAACAAGAGCAGCAGCAGCAGTGCCGTCAGCAATGTGCACAGCAATTGAGCCAGCGAGAGCGTCAACAAATCTGTGAGCAACGCTGCCAGAGGCAACAACGTGGGGATCAACAACAGAAACAACAGTGCCAAAGAAGGTGCCAGCAACAACTTGAGCAGGGTCAACAGGGTGAGGACCAGAACTACCGACGAGAAAGGGAGGACCAGCAAATTCGGGGTCAGAGCCAAATGAACAACCCTTACTACTTCCCCTCGGACATGTTTCAGCAAAAATTCAGGTCTCAAGAAGGTGGGATGTATGTTCTTGAGAGGTTCACCGAGAATGAAAATAAGCTTCTTCGCGGCATTAGGAACTACCGATTAGCCATCATCGAGGCCAAGCCCAACACTTTCGTCCTCCCACACCATTGTGATGCTGAATCTATTTTCGTTGTTATCAATGGACGTTGCACCTGTACAATGTTGATGCAAGACAACAAAGAGTCGTTCAACATGGAAATGGGTGATGTCCTCAGAGTTCCTGCAGGGGCTATCGTCTACCTTGTTAACAACAACAATGATCAGACTCTAAGAATTGCAAAGCTCAAGCAGCCAGTCAACACTCCTGGACGATTTGAGGAGTTCTTCCCTGCAAGTTCTCAAGACCTAGACTCATACTTCAACGTTTTCAGCGATGACATTCTTGAATCAGCCTTCAATACCCCAAGCGATCAGCTACAGAGGGTGTTTGGACAACAACAGCAGAAGAGGCAAGGCATGGTGATGAGGGCATCACCACAACAACTCCAGGCATTGAGTCAGCACGCTTCTTCGCCCAGGAGCAAAGGCCGTCAGTCTGGCAAGGGTCCATTCAATCTTCGAAACCAAAAGCCCATCCAGGCCAACAAGTTCGGCAAATTATTCGAAGCTCGCCCTGAGAAGTTCGATCAGCTCCAGGACATGGATGTCTCAGTCACTTGCGTTGAAGTCAACAATGAAGCTATGATGCTGCCACACTACAATTCTAAAGCAATATTCGTGGTGCTGGTTGTGGAAGGAAGCGGACGGGTCGAGATGGCATGCCCACACATGGCAAGCCAGAGCCAAATGGGTGAGGAAGAAGTAGAACAACATGGAGAACAGATGAAGGTCACAGCTGATGTATCAGAGGGTGATGTTTTCGTTATCCCAGCAGGTCATCCCATTGCCATAGTTGCCCAAAACCAACAATTGAAAATGTTGGGATTTGGAATCAATGCCCAAAACAACAAGAGGAACTTCATTGCAGGGAGAGAGGCTAACCCGATTAGGGAGATGGAGAGAGAGGCTAAGCAACTGACCTTCGGGCAAGAGATGGAGCAGATCATCAACAGGCAGAGGGAATCTTATTTCGCCCCGACAGGGCAGAGCCAGCAGCAGAGAGGAGGCAGAGACGAGCCCTTATCTTCAATTTTGGCATTTGCAGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

730

Amino Acids

84.75

Weight (kDa)

7.83

Isoelectric Point (pI)

69.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vicilin_N	PF04702	25 - 142	3.2e-07	Vicilin N terminal region
Cupin_1	PF00190	356 - 444	6.1e-08	Cupin
Cupin_1	PF00190	531 - 670	1.4e-23	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT2G47170 AT2G47170 AT2G47170 AT3G62290 AT3G62290 AT3G62290
prunus_persica	Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0426591
rosa_rugosa	Rorug04G0213800 Rorug04G0213900
rosa_samantha	Rh4AG268900 Rh4BG275200 Rh4CG289500
rosa_wichuraiana	Rw4G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1685
Acc16I	TGCGCA	1 cut(s)	547
Acc36I	ACCTGC	1 cut(s)	1904
AccB1I	GGYRCC	1 cut(s)	879
AccB7I	CCANNNNNTGG	2 cut(s)	94, 1681
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	1278
AccII	CGCG	4 cut(s)	133, 135, 198, 1083
AclI	AACGTT	1 cut(s)	1404
AclWI	GGATC	6 cut(s)	74, 87, 224, 452, 680, 855
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	951, 1013
AfaI	GTAC	1 cut(s)	1198
AfiI	CCNNNNNNNGG	5 cut(s)	94, 1681, 1810, 2029, 2121
AflIII	ACRYGT	1 cut(s)	999
AgsI	TTSAA	9 cut(s)	143, 1231, 1402, 1427, 1438, 1594, 1706, 1954, 2169
AjnI	CCWGG	5 cut(s)	1345, 1527, 1556, 1617, 1674
AleI	CACNNNNGTG	1 cut(s)	1149
AluBI	AGCT	9 cut(s)	421, 649, 1075, 1324, 1456, 1649, 1672, 1721, 1877
AluI	AGCT	9 cut(s)	421, 649, 1075, 1324, 1456, 1649, 1672, 1721, 1877
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	3 cut(s)	1026, 1693, 2145
Alw44I	GTGCAC	1 cut(s)	777
AlwI	GGATC	6 cut(s)	74, 87, 224, 452, 680, 855
Ama87I	CYCGRG	2 cut(s)	422, 650
AoxI	GGCC	7 cut(s)	193, 283, 511, 739, 1116, 1567, 1620
ApaLI	GTGCAC	1 cut(s)	777
ApoI	RAATTY	2 cut(s)	951, 1013
ArsI	GACNNNNNNTTYG	6 cut(s)	352, 384, 580, 612, 943, 975
AseI	ATTAAT	1 cut(s)	444
AspLEI	GCGC	3 cut(s)	135, 345, 548
AspS9I	GGNCC	4 cut(s)	739, 916, 943, 1586
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	7 cut(s)	923, 1048, 1256, 1506, 1513, 1844, 1904
AsuII	TTCGAA	2 cut(s)	1600, 1644
AvaI	CYCGRG	2 cut(s)	422, 650
AvaII	GGWCC	3 cut(s)	916, 943, 1586
BaeGI	GKGCMC	1 cut(s)	781
BamHI	GGATCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	2160
BauI	CACGAG	2 cut(s)	225, 338
Bbv12I	GWGCWC	1 cut(s)	781
BccI	CCATC	5 cut(s)	1115, 1622, 1789, 2029, 2068
BceAI	ACGGC	4 cut(s)	298, 519, 750, 1554
BcgI	CGANNNNNNTGC	2 cut(s)	1624, 1658
BciT130I	CCWGG	5 cut(s)	1347, 1529, 1558, 1619, 1676
BclI	TGATCA	1 cut(s)	1300
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	1026, 1693, 2145
BfaI	CTAG	3 cut(s)	437, 665, 1388
BfmI	CTRYAG	2 cut(s)	1263, 1457
BfoI	RGCGCY	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	1904
BglI	GCCNNNNNGGC	1 cut(s)	201
BlpI	GCTNAGC	1 cut(s)	2049
Bme1390I	CCNGG	6 cut(s)	119, 1347, 1529, 1558, 1619, 1676
Bme18I	GGWCC	3 cut(s)	916, 943, 1586
BmeT110I	CYCGRG	2 cut(s)	422, 650
BmgT120I	GGNCC	4 cut(s)	739, 916, 943, 1586
BmiI	GGNNCC	3 cut(s)	81, 881, 1587
BmrFI	CCNGG	6 cut(s)	119, 1347, 1529, 1558, 1619, 1676
BmsI	GCATC	9 cut(s)	104, 117, 168, 363, 591, 1144, 1197, 1520, 1716
BoxI	GACNNNNGTC	2 cut(s)	384, 612
BpmI	CTGGAG	2 cut(s)	1511, 1658
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	2049
Bpu14I	TTCGAA	2 cut(s)	1600, 1644
BpuEI	CTTGAG	7 cut(s)	494, 722, 914, 1008, 1067, 1310, 1365
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	1026
BsaJI	CCNNGG	3 cut(s)	196, 993, 1556
BsaXI	ACNNNNNCTCC	2 cut(s)	1509, 1539
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 1681, 1810, 2029, 2121
Bse1I	ACTGG	2 cut(s)	268, 1334
Bse3DI	GCAATG	6 cut(s)	107, 308, 485, 779, 1923, 2001
BseBI	CCWGG	5 cut(s)	1347, 1529, 1558, 1619, 1676
BseDI	CCNNGG	3 cut(s)	196, 993, 1556
BseGI	GGATG	5 cut(s)	183, 1041, 1614, 1690, 1918
BseLI	CCNNNNNNNGG	5 cut(s)	94, 1681, 1810, 2029, 2121
BseMI	GCAATG	6 cut(s)	107, 308, 485, 779, 1923, 2001
BseMII	CTCAG	4 cut(s)	225, 1267, 1647, 1704
BseNI	ACTGG	2 cut(s)	268, 1334
BseRI	GAGGAG	4 cut(s)	29, 137, 1373, 2157
BseSI	GKGCMC	1 cut(s)	781
BseYI	CCCAGC	2 cut(s)	87, 1909
Bsh1236I	CGCG	4 cut(s)	133, 135, 198, 1083
BshFI	GGCC	7 cut(s)	195, 285, 513, 741, 1118, 1569, 1622
BshNI	GGYRCC	1 cut(s)	879
BsiHKAI	GWGCWC	1 cut(s)	781
BsiHKCI	CYCGRG	2 cut(s)	422, 650
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	5 cut(s)	94, 1681, 1810, 2029, 2121
BsmAI	GTCTC	3 cut(s)	1026, 1693, 2145
BsmBI	CGTCTC	1 cut(s)	2145
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	7 cut(s)	195, 285, 513, 741, 1118, 1569, 1622
Bso31I	GGTCTC	1 cut(s)	1026
BsoBI	CYCGRG	2 cut(s)	422, 650
Bsp119I	TTCGAA	2 cut(s)	1600, 1644
Bsp1286I	GDGCHC	2 cut(s)	781, 2160
Bsp1407I	TGTACA	1 cut(s)	1196
Bsp143I	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
Bsp1720I	GCTNAGC	1 cut(s)	2049
BspANI	GGCC	7 cut(s)	195, 285, 513, 741, 1118, 1569, 1622
BspCNI	CTCAG	4 cut(s)	226, 1266, 1648, 1703
BspFNI	CGCG	4 cut(s)	133, 135, 198, 1083
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	3 cut(s)	81, 881, 1587
BspMAI	CTGCAG	1 cut(s)	1267
BspMI	ACCTGC	1 cut(s)	1904
BspPI	GGATC	6 cut(s)	74, 87, 224, 452, 680, 855
BspT104I	TTCGAA	2 cut(s)	1600, 1644
BspT107I	GGYRCC	1 cut(s)	879
BspTNI	GGTCTC	1 cut(s)	1026
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	6 cut(s)	107, 308, 485, 779, 1923, 2001
BsrGI	TGTACA	1 cut(s)	1196
BsrI	ACTGG	2 cut(s)	268, 1334
BssECI	CCNNGG	3 cut(s)	196, 993, 1556
BssMI	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
BssSI	CACGAG	2 cut(s)	225, 338
Bst2BI	CACGAG	2 cut(s)	225, 338
Bst2UI	CCWGG	5 cut(s)	1347, 1529, 1558, 1619, 1676
Bst4CI	ACNGT	5 cut(s)	383, 396, 611, 624, 867
Bst6I	CTCTTC	2 cut(s)	39, 1481
BstAUI	TGTACA	1 cut(s)	1196
BstBI	TTCGAA	2 cut(s)	1600, 1644
BstDEI	CTNAG	6 cut(s)	234, 1253, 1310, 1656, 1690, 2049
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	5 cut(s)	183, 1041, 1614, 1690, 1918
BstFNI	CGCG	4 cut(s)	133, 135, 198, 1083
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	3 cut(s)	135, 345, 548
BstKTI	GATC	9 cut(s)	82, 232, 460, 688, 850, 1303, 1453, 1669, 2085
BstMAI	GTCTC	3 cut(s)	1026, 1693, 2145
BstMBI	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
BstNI	CCWGG	5 cut(s)	1347, 1529, 1558, 1619, 1676
BstNSI	RCATGY	4 cut(s)	415, 643, 1003, 1803
BstPAI	GACNNNNGTC	2 cut(s)	384, 612
BstSCI	CCNGG	6 cut(s)	117, 1345, 1527, 1556, 1617, 1674
BstSFI	CTRYAG	2 cut(s)	1263, 1457
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	4 cut(s)	133, 135, 198, 1083
BstX2I	RGATCY	3 cut(s)	79, 457, 685
BstYI	RGATCY	3 cut(s)	79, 457, 685
BsuRI	GGCC	7 cut(s)	195, 285, 513, 741, 1118, 1569, 1622
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	2 cut(s)	127, 1428
BtsCI	GGATG	5 cut(s)	183, 1041, 1614, 1690, 1918
BtsI	GCAGTG	5 cut(s)	158, 257, 536, 713, 767
BveI	ACCTGC	1 cut(s)	1904
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	3 cut(s)	135, 345, 548
Cfr13I	GGNCC	4 cut(s)	739, 916, 943, 1586
Cfr42I	CCGCGG	1 cut(s)	199
CseI	GACGC	2 cut(s)	560, 791
Csp6I	GTAC	1 cut(s)	1197
CspCI	CAANNNNNGTGG	2 cut(s)	1740, 1775
CviQI	GTAC	1 cut(s)	1197
DdeI	CTNAG	6 cut(s)	234, 1253, 1310, 1656, 1690, 2049
DpnI	GATC	9 cut(s)	81, 231, 459, 687, 849, 1302, 1452, 1668, 2084
DpnII	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
DrdI	GACNNNNNNGTC	1 cut(s)	1685
DseDI	GACNNNNNNGTC	1 cut(s)	1685
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	39, 1481
EarI	CTCTTC	2 cut(s)	39, 1481
Eco24I	GRGCYC	1 cut(s)	2160
Eco31I	GGTCTC	1 cut(s)	1026
Eco47I	GGWCC	3 cut(s)	916, 943, 1586
Eco88I	CYCGRG	2 cut(s)	422, 650
EcoRII	CCWGG	5 cut(s)	1345, 1527, 1556, 1617, 1674
EcoT38I	GRGCYC	1 cut(s)	2160
Esp3I	CGTCTC	1 cut(s)	2145
FalI	AAGNNNNNCTT	2 cut(s)	1982, 2014
FbaI	TGATCA	1 cut(s)	1300
FblI	GTMKAC	1 cut(s)	1278
FokI	GGATG	5 cut(s)	190, 1048, 1601, 1697, 1905
FriOI	GRGCYC	1 cut(s)	2160
FspAI	RTGCGCAY	1 cut(s)	547
FspBI	CTAG	3 cut(s)	437, 665, 1388
FspI	TGCGCA	1 cut(s)	547
GlaI	GCGC	3 cut(s)	134, 344, 547
GsaI	CCCAGC	2 cut(s)	91, 1913
GsuI	CTGGAG	2 cut(s)	1511, 1658
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	7 cut(s)	195, 285, 513, 741, 1118, 1569, 1622
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	2 cut(s)	560, 791
HhaI	GCGC	3 cut(s)	135, 345, 548
Hin6I	GCGC	3 cut(s)	133, 343, 546
HinP1I	GCGC	3 cut(s)	133, 343, 546
HincII	GTYRAC	8 cut(s)	323, 539, 575, 806, 905, 1288, 1339, 1711
HindII	GTYRAC	8 cut(s)	323, 539, 575, 806, 905, 1288, 1339, 1711
HindIII	AAGCTT	1 cut(s)	1073
HinfI	GANTC	8 cut(s)	1160, 1223, 1306, 1391, 1427, 1537, 1971, 2102
HpaI	GTTAAC	1 cut(s)	1288
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	7 cut(s)	923, 1048, 1256, 1506, 1513, 1844, 1904
Hpy188I	TCNGA	7 cut(s)	372, 600, 963, 997, 1256, 1305, 1888
Hpy99I	CGWCG	1 cut(s)	933
HpyAV	CCTTC	9 cut(s)	64, 93, 399, 870, 1022, 1444, 1769, 1861, 2071
HpyCH4III	ACNGT	5 cut(s)	383, 396, 611, 624, 867
HpyCH4IV	ACGT	5 cut(s)	364, 592, 841, 1186, 1404
HpyF3I	CTNAG	6 cut(s)	234, 1253, 1310, 1656, 1690, 2049
HpySE526I	ACGT	5 cut(s)	364, 592, 841, 1186, 1404
HspAI	GCGC	3 cut(s)	133, 343, 546
Ksp22I	TGATCA	1 cut(s)	1300
KspAI	GTTAAC	1 cut(s)	1288
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
LmnI	GCTCC	4 cut(s)	97, 1560, 1677, 2077
LweI	GCATC	9 cut(s)	104, 117, 168, 363, 591, 1144, 1197, 1520, 1716
MaeI	CTAG	3 cut(s)	437, 665, 1388
MaeII	ACGT	5 cut(s)	364, 592, 841, 1186, 1404
MaeIII	GTNAC	2 cut(s)	1693, 1870
MalI	GATC	9 cut(s)	81, 231, 459, 687, 849, 1302, 1452, 1668, 2084
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
MboII	GAAGA	8 cut(s)	26, 1070, 1357, 1498, 1542, 1589, 1850, 2157
MfeI	CAATTG	3 cut(s)	554, 785, 1949
MflI	RGATCY	3 cut(s)	79, 457, 685
MhlI	GDGCHC	2 cut(s)	781, 2160
MluCI	AATT	9 cut(s)	554, 785, 951, 1013, 1314, 1637, 1741, 1949, 2169
MlyI	GAGTC	4 cut(s)	1232, 1300, 1385, 1546
MmeI	TCCRAC	1 cut(s)	75
MseI	TTAA	4 cut(s)	444, 672, 1287, 2191
MslI	CAYNNNNRTG	4 cut(s)	1149, 1152, 1238, 1502
MspA1I	CMGCKG	3 cut(s)	109, 198, 1877
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	6 cut(s)	119, 1347, 1529, 1558, 1619, 1676
MunI	CAATTG	3 cut(s)	554, 785, 1949
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	5 cut(s)	1347, 1529, 1558, 1619, 1676
MvnI	CGCG	4 cut(s)	133, 135, 198, 1083
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
NlaIV	GGNNCC	3 cut(s)	81, 881, 1587
NmuCI	GTSAC	2 cut(s)	1693, 1870
NsbI	TGCGCA	1 cut(s)	547
NspI	RCATGY	4 cut(s)	415, 643, 1003, 1803
NspV	TTCGAA	2 cut(s)	1600, 1644
OliI	CACNNNNGTG	1 cut(s)	1149
PaeI	GCATGC	3 cut(s)	415, 643, 1803
PaeR7I	CTCGAG	2 cut(s)	422, 650
PagI	TCATGA	1 cut(s)	73
PciI	ACATGT	1 cut(s)	999
PcsI	WCGNNNNNNNCGW	1 cut(s)	1410
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	4 cut(s)	1160, 1427, 1971, 2102
PflFI	GACNNNGTC	2 cut(s)	366, 594
PflMI	CCANNNNNTGG	2 cut(s)	94, 1681
PfoI	TCCNGGA	2 cut(s)	1345, 1674
PleI	GAGTC	4 cut(s)	1231, 1300, 1385, 1545
PpsI	GAGTC	4 cut(s)	1231, 1300, 1385, 1545
PscI	ACATGT	1 cut(s)	999
PshAI	GACNNNNGTC	2 cut(s)	384, 612
PshBI	ATTAAT	1 cut(s)	444
Psp1406I	AACGTT	1 cut(s)	1404
Psp6I	CCWGG	5 cut(s)	1345, 1527, 1556, 1617, 1674
PspFI	CCCAGC	2 cut(s)	87, 1909
PspGI	CCWGG	5 cut(s)	1345, 1527, 1556, 1617, 1674
PspN4I	GGNNCC	3 cut(s)	81, 881, 1587
PspPI	GGNCC	4 cut(s)	739, 916, 943, 1586
PspXI	VCTCGAGB	2 cut(s)	422, 650
PsrI	GAACNNNNNNTAC	2 cut(s)	965, 997
PstI	CTGCAG	1 cut(s)	1267
PsuI	RGATCY	3 cut(s)	79, 457, 685
PsyI	GACNNNGTC	2 cut(s)	366, 594
PvuII	CAGCTG	1 cut(s)	1877
RsaI	GTAC	1 cut(s)	1198
RsaNI	GTAC	1 cut(s)	1197
RseI	CAYNNNNRTG	4 cut(s)	1149, 1152, 1238, 1502
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	4 cut(s)	444, 672, 1287, 2191
Sau3AI	GATC	9 cut(s)	79, 229, 457, 685, 847, 1300, 1450, 1666, 2082
Sau96I	GGNCC	4 cut(s)	739, 916, 943, 1586
SbfI	CCTGCAGG	1 cut(s)	1267
SchI	GAGTC	4 cut(s)	1232, 1300, 1385, 1546
ScrFI	CCNGG	6 cut(s)	119, 1347, 1529, 1558, 1619, 1676
SdaI	CCTGCAGG	1 cut(s)	1267
SduI	GDGCHC	2 cut(s)	781, 2160
SfaNI	GCATC	9 cut(s)	104, 117, 168, 363, 591, 1144, 1197, 1520, 1716
SfcI	CTRYAG	2 cut(s)	1263, 1457
Sfr274I	CTCGAG	2 cut(s)	422, 650
Sfr303I	CCGCGG	1 cut(s)	199
SfuI	TTCGAA	2 cut(s)	1600, 1644
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	3 cut(s)	916, 943, 1586
SlaI	CTCGAG	2 cut(s)	422, 650
SmiMI	CAYNNNNRTG	4 cut(s)	1149, 1152, 1238, 1502
SmlI	CTYRAG	9 cut(s)	422, 473, 650, 701, 893, 1023, 1046, 1325, 1380
SmoI	CTYRAG	9 cut(s)	422, 473, 650, 701, 893, 1023, 1046, 1325, 1380
SphI	GCATGC	3 cut(s)	415, 643, 1803
Sse8387I	CCTGCAGG	1 cut(s)	1267
Sse9I	AATT	9 cut(s)	554, 785, 951, 1013, 1314, 1637, 1741, 1949, 2169
SspI	AATATT	1 cut(s)	1755
SspMI	CTAG	3 cut(s)	437, 665, 1388
StyD4I	CCNGG	6 cut(s)	117, 1345, 1527, 1556, 1617, 1674
TaaI	ACNGT	5 cut(s)	383, 396, 611, 624, 867
TaiI	ACGT	5 cut(s)	367, 595, 844, 1189, 1407
TaqI	TCGA	9 cut(s)	272, 423, 500, 651, 1113, 1600, 1644, 1665, 1791
TasI	AATT	9 cut(s)	554, 785, 951, 1013, 1314, 1637, 1741, 1949, 2169
TatI	WGTACW	1 cut(s)	1196
TauI	GCSGC	5 cut(s)	112, 133, 198, 309, 1086
TfiI	GAWTC	4 cut(s)	1160, 1427, 1971, 2102
Tru1I	TTAA	4 cut(s)	444, 672, 1287, 2191
Tru9I	TTAA	4 cut(s)	444, 672, 1287, 2191
TseFI	GTSAC	2 cut(s)	1693, 1870
Tsp45I	GTSAC	2 cut(s)	1693, 1870
TspDTI	ATGAA	5 cut(s)	986, 1080, 1731, 1880, 1990
Tth111I	GACNNNGTC	2 cut(s)	366, 594
Van91I	CCANNNNNTGG	2 cut(s)	94, 1681
VneI	GTGCAC	1 cut(s)	777
VpaK11BI	GGWCC	3 cut(s)	916, 943, 1586
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	951, 1013
XceI	RCATGY	4 cut(s)	415, 643, 1003, 1803
XhoI	CTCGAG	2 cut(s)	422, 650
XmiI	GTMKAC	1 cut(s)	1278
XspI	CTAG	3 cut(s)	437, 665, 1388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.