Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006984

Physical Location & Seq

Genomic Coordinates Reverse (-)

26563718 .. 26565865

Gene Structure 2148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGTTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACAATCTTGTACAAGCTCAAGCTCGGAGAGATTGTCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGGAATACAAGAACATTAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTACTTCCAGAACACTCAAGGTCTAATCTTTGTTGTTGATAGCAATGACAGAGACAGAGTTGTTGAGGCTCGAGATGAACTCCACAGGATGCTGAATGAGGACGAGCTGCGTGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGCTGAAATCACAGATAAGCTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGAGCACATGTGCCACTTCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCGCTGGCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0008047 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0016004 GO:0016020 GO:0017076 GO:0019001 GO:0030234 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050790 GO:0050896 GO:0060229 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098772 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

181

Amino Acids

20.59

Weight (kDa)

6.43

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 177	1.7e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	4.8e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	8.3e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 169	6e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.6e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	45 - 111	7.9e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT2G47170 AT2G47170 AT2G47170 AT3G62290 AT3G62290 AT3G62290
prunus_persica	Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0426591
rosa_rugosa	Rorug04G0213800 Rorug04G0213900
rosa_samantha	Rh4AG268900 Rh4BG275200 Rh4CG289500
rosa_wichuraiana	Rw4G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	468
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	5 cut(s)	22, 109, 115, 346, 427
AluI	AGCT	5 cut(s)	22, 109, 115, 346, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	229, 285
AlwI	GGATC	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	80, 346, 407
ApoI	RAATTY	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	121, 181, 500
AvaI	CYCGRG	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	67, 333, 394
BccI	CCATC	2 cut(s)	58, 143
BcoDI	GTCTC	2 cut(s)	229, 285
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	3 cut(s)	81, 347, 408
BlsI	GCNGC	3 cut(s)	82, 348, 409
BmeT110I	CYCGRG	1 cut(s)	309
BmsI	GCATC	4 cut(s)	42, 67, 318, 343
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
BpuEI	CTTGAG	2 cut(s)	95, 240
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	135, 205, 333
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	3 cut(s)	67, 333, 394
BshFI	GGCC	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	229, 285
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	219, 385
BspANI	GGCC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	518
BssMI	GATC	2 cut(s)	219, 385
Bst4CI	ACNGT	2 cut(s)	166, 193
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	32, 535
BstF5I	GGATG	3 cut(s)	135, 205, 333
BstKTI	GATC	2 cut(s)	222, 388
BstMAI	GTCTC	2 cut(s)	229, 285
BstMBI	GATC	2 cut(s)	219, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNSI	RCATGY	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	67, 333, 394
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BsuRI	GGCC	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	135, 205, 333
Cac8I	GCNNGC	2 cut(s)	32, 535
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	474, 543
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	2 cut(s)	221, 387
DpnII	GATC	2 cut(s)	219, 385
DraIII	CACNNNGTG	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	477, 546
FaiI	YATR	5 cut(s)	401, 462, 475, 501, 544
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	473, 542
Fnu4HI	GCNGC	3 cut(s)	81, 347, 408
FokI	GGATG	3 cut(s)	122, 212, 340
Fsp4HI	GCNGC	3 cut(s)	81, 347, 408
GluI	GCNGC	3 cut(s)	81, 347, 408
HaeIII	GGCC	1 cut(s)	432
HgaI	GACGC	1 cut(s)	440
Hin1II	CATG	2 cut(s)	477, 546
HindIII	AAGCTT	1 cut(s)	425
HphI	GGTGA	3 cut(s)	121, 181, 500
Hpy188I	TCNGA	2 cut(s)	63, 119
Hpy188III	TCNNGA	6 cut(s)	74, 212, 247, 311, 466, 509
HpyAV	CCTTC	4 cut(s)	40, 443, 485, 497
HpyCH4III	ACNGT	2 cut(s)	166, 193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
Hsp92II	CATG	2 cut(s)	477, 546
Kzo9I	GATC	2 cut(s)	219, 385
Lsp1109I	GCAGC	3 cut(s)	67, 333, 394
LweI	GCATC	4 cut(s)	42, 67, 318, 343
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	221, 387
MboI	GATC	2 cut(s)	219, 385
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	2 cut(s)	219, 385
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	3 cut(s)	298, 331, 452
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NdeII	GATC	2 cut(s)	219, 385
NlaIII	CATG	2 cut(s)	477, 546
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	309
PciI	ACATGT	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	82, 348, 409
PscI	ACATGT	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	219, 385
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	3 cut(s)	81, 347, 408
Sau3AI	GATC	2 cut(s)	219, 385
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	24, 111, 117, 262, 348, 429, 490, 508
SfaNI	GCATC	4 cut(s)	42, 67, 318, 343
Sfr274I	CTCGAG	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	309
SmlI	CTYRAG	3 cut(s)	110, 255, 309
SmoI	CTYRAG	3 cut(s)	110, 255, 309
Sse9I	AATT	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	166, 193
TaqI	TCGA	1 cut(s)	310
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	80, 346, 407
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	330, 416, 516
TspGWI	ACGGA	2 cut(s)	212, 434
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	1 cut(s)	477
XhoI	CTCGAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.