Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006984

Physical Location & Seq

Genomic Coordinates Forward (+)

19366596 .. 19368840

Gene Structure 2245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGTTGTCATTCGGAAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGTTGGTCTCGATGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGTCACCACTATTCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTTCACCGTGTGGGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCAGAACACACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGCCAGGGACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGTATTTGCTAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCTTGGGCTTCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGGAGAAGGACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0008047 GO:0008150 GO:0010033 GO:0010817 GO:0012505 GO:0014070 GO:0016004 GO:0016192 GO:0017076 GO:0019001 GO:0019222 GO:0030234 GO:0031001 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0060229 GO:0065007 GO:0065008 GO:0065009 GO:0090354 GO:0097159 GO:0097367 GO:0097708 GO:0098772 GO:0098791 GO:0098876 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

181

Amino Acids

20.61

Weight (kDa)

6.43

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 177	2e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	4.8e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	8.3e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 173	5.2e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.6e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	45 - 111	8e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT2G47170 AT2G47170 AT2G47170 AT3G62290 AT3G62290 AT3G62290
prunus_persica	Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0426591
rosa_rugosa	Rorug04G0213800 Rorug04G0213900
rosa_samantha	Rh4AG268900 Rh4BG275200 Rh4CG289500
rosa_wichuraiana	Rw4G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccII	CGCG	1 cut(s)	398
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	1 cut(s)	214
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	154, 170, 305
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	4 cut(s)	109, 186, 319, 427
AluI	AGCT	4 cut(s)	109, 186, 319, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	77, 155, 229
AlwI	GGATC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	80, 407
AsuHPI	GGTGA	2 cut(s)	121, 181
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	67, 394
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	77, 155, 229
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	2 cut(s)	81, 408
BlsI	GCNGC	2 cut(s)	82, 409
Bme1390I	CCNGG	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	4 cut(s)	42, 67, 318, 343
BplI	GAGNNNNNCTC	2 cut(s)	480, 512
BpmI	CTGGAG	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	461, 518
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	4 cut(s)	205, 333, 346, 358
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	461, 518
BseXI	GCAGC	2 cut(s)	67, 394
Bsh1236I	CGCG	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	473
BslFI	GGGAC	3 cut(s)	273, 326, 519
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	77, 155, 229
BsmFI	GGGAC	3 cut(s)	273, 326, 519
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	123, 219, 286, 385
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	398
BspPI	GGATC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	461, 518
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	123, 219, 286, 385
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	166, 193, 296
Bst6I	CTCTTC	1 cut(s)	447
BstC8I	GCNNGC	2 cut(s)	32, 535
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	4 cut(s)	205, 333, 346, 358
BstFNI	CGCG	1 cut(s)	398
BstKTI	GATC	4 cut(s)	126, 222, 289, 388
BstMAI	GTCTC	3 cut(s)	77, 155, 229
BstMBI	GATC	4 cut(s)	123, 219, 286, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	67, 394
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BtgZI	GCGATG	2 cut(s)	413, 514
BtsCI	GGATG	4 cut(s)	205, 333, 346, 358
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	32, 535
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	1 cut(s)	474
CviJI	RGCY	8 cut(s)	34, 109, 186, 308, 319, 427, 433, 517
CviKI_1	RGCY	8 cut(s)	34, 109, 186, 308, 319, 427, 433, 517
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	4 cut(s)	125, 221, 288, 387
DpnII	GATC	4 cut(s)	123, 219, 286, 385
DraIII	CACNNNGTG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	308
FaeI	CATG	1 cut(s)	477
FaiI	YATR	3 cut(s)	475, 501, 544
FaqI	GGGAC	3 cut(s)	273, 326, 519
FatI	CATG	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	81, 408
FokI	GGATG	4 cut(s)	212, 340, 353, 365
Fsp4HI	GCNGC	2 cut(s)	81, 408
GluI	GCNGC	2 cut(s)	81, 408
GsuI	CTGGAG	1 cut(s)	507
Hin1II	CATG	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	495
HphI	GGTGA	2 cut(s)	121, 181
Hpy166II	GTNNAC	2 cut(s)	277, 449
Hpy188I	TCNGA	3 cut(s)	17, 63, 468
Hpy188III	TCNNGA	5 cut(s)	74, 212, 247, 290, 486
Hpy8I	GTNNAC	2 cut(s)	277, 449
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	3 cut(s)	166, 193, 296
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	123, 219, 286, 385
Lsp1109I	GCAGC	2 cut(s)	67, 394
LweI	GCATC	4 cut(s)	42, 67, 318, 343
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	127, 290
MalI	GATC	4 cut(s)	125, 221, 288, 387
MboI	GATC	4 cut(s)	123, 219, 286, 385
MboII	GAAGA	3 cut(s)	55, 380, 434
MflI	RGATCY	2 cut(s)	219, 385
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	2 cut(s)	164, 546
MnlI	CCTC	5 cut(s)	110, 331, 342, 493, 496
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NdeII	GATC	4 cut(s)	123, 219, 286, 385
NlaIII	CATG	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	127, 290
NspI	RCATGY	1 cut(s)	477
PciI	ACATGT	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	82, 409
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PscI	ACATGT	1 cut(s)	473
Psp1406I	AACGTT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	219, 385
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SatI	GCNGC	2 cut(s)	81, 408
Sau3AI	GATC	4 cut(s)	123, 219, 286, 385
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	6 cut(s)	111, 159, 188, 321, 429, 485
SfaNI	GCATC	4 cut(s)	42, 67, 318, 343
Sse9I	AATT	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	166, 193, 296
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	344
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	127, 290
TseI	GCWGC	2 cut(s)	80, 407
Tsp45I	GTSAC	2 cut(s)	127, 290
TspDTI	ATGAA	3 cut(s)	357, 416, 425
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	146
XceI	RCATGY	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.