Rh4CG289500
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006984
Physical Location & Seq
Forward (+)
54850517 .. 54853233
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG289500.1

Sequence Viewer

Length: 687 bp
ATGGCGCGAGGGACGAAGAGAACTGCCTCTCTGGAATCCGAATCTGAATCTGCATCTGCATCTGCTTTTCAGATTAAGAAAGTAGTGACCGTACGGCCCCATAAGAACCACACATGCACACCTCTCTTTCTACCATACAAGATGGGGTTGTCTTTCGCCAAACTTTTCAGCAAACTTTTTGCTAAGAAGGATATGCGTATTCTTATGGTGGGTCTTGATGCTGCTGGTAAAACCACCATTTTGTATAAGCTCAAGTTAGGCGAAATCGTTACCACCATTCCTACCATTGGATTTAATGTGGAAACTGTGGAATACAAAAACATCAGCTTCACAGTGTGGGATGTTGGGGGCCAAGACAAGATTCGACCACTATGGAGACACTACTTCCAAAACACACAAGGGCTTGTCTTTGTGATTGACAGCAATGATCGAGATCGTGTTGTTGAGGCTAAAGATGAGCTGCACAGGATGTTGAATGAGGACGAGTTGAGGGATGCTGTGCTTCTTGTGTTTGCAAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGAGATCACCGATAAGCTTGGCCTTCATTCTCTTCGACAACGCCATTGGTATATCCAGAGTACATGTGCCACTTCCGGTGAAGGATTGTACGAGGGATTGGACTGGCTTTCAAACAACATTGTTAACAAGGCATAG

Protein Analysis

228

Amino Acids

25.79

Weight (kDa)

8.97

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 53 - 224 5e-81 ADP-ribosylation factor family
SRPRB PF09439 64 - 190 1.8e-12 Signal recognition particle receptor beta subunit
Roc PF08477 66 - 176 2.6e-13 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 66 - 220 1.4e-11 Ras family
Gtr1_RagA PF04670 66 - 187 2.1e-09 Gtr1/RagA G protein conserved region
G-alpha PF00503 92 - 158 4.9e-09 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AdeI CACNNNGTG 1 cut(s) 336
AfaI GTAC 3 cut(s) 93, 613, 641
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 2 cut(s) 475, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 4 cut(s) 250, 327, 460, 568
AluI AGCT 4 cut(s) 250, 327, 460, 568
Alw26I GTCTC 1 cut(s) 370
AoxI GGCC 3 cut(s) 95, 349, 571
ApeKI GCWGC 3 cut(s) 221, 460, 548
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 96, 349
AsuHPI GGTGA 2 cut(s) 550, 641
BbvI GCAGC 3 cut(s) 208, 447, 535
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 370
BglII AGATCT 1 cut(s) 526
BisI GCNGC 3 cut(s) 222, 461, 549
BlsI GCNGC 3 cut(s) 223, 462, 550
BmgT120I GGNCC 2 cut(s) 96, 349
BmiI GGNNCC 2 cut(s) 98, 350
BmsI GCATC 4 cut(s) 62, 68, 208, 484
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 2 cut(s) 430, 546
Bse8I GATNNNNATC 1 cut(s) 432
BseGI GGATG 3 cut(s) 346, 474, 499
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 2 cut(s) 430, 546
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 3 cut(s) 208, 447, 535
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 3 cut(s) 97, 351, 573
BsiSI CCGG 1 cut(s) 627
BsiWI CGTACG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 3 cut(s) 97, 351, 573
Bsp143I GATC 4 cut(s) 427, 433, 526, 555
BspANI GGCC 3 cut(s) 97, 351, 573
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 98, 350
BsrDI GCAATG 2 cut(s) 430, 546
BsrI ACTGG 1 cut(s) 659
BssMI GATC 4 cut(s) 427, 433, 526, 555
Bst4CI ACNGT 3 cut(s) 91, 307, 334
Bst6I CTCTTC 2 cut(s) 11, 588
BstAPI GCANNNNNTGC 1 cut(s) 545
BstDEI CTNAG 2 cut(s) 183, 552
BstF5I GGATG 3 cut(s) 346, 474, 499
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 430, 436, 529, 558
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 4 cut(s) 427, 433, 526, 555
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNSI RCATGY 2 cut(s) 117, 618
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 208, 447, 535
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 3 cut(s) 97, 351, 573
BtsCI GGATG 3 cut(s) 346, 474, 499
BtsIMutI CAGTG 1 cut(s) 339
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 96, 349
Csp6I GTAC 3 cut(s) 92, 612, 640
CviAII CATG 2 cut(s) 114, 615
CviQI GTAC 3 cut(s) 92, 612, 640
DdeI CTNAG 2 cut(s) 183, 552
DpnI GATC 4 cut(s) 429, 435, 528, 557
DpnII GATC 4 cut(s) 427, 433, 526, 555
DraIII CACNNNGTG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 11, 588
EarI CTCTTC 2 cut(s) 11, 588
FaeI CATG 2 cut(s) 117, 618
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 113, 614
Fnu4HI GCNGC 3 cut(s) 222, 461, 549
FokI GGATG 3 cut(s) 353, 481, 506
Fsp4HI GCNGC 3 cut(s) 222, 461, 549
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 222, 461, 549
HaeIII GGCC 3 cut(s) 97, 351, 573
HapII CCGG 1 cut(s) 627
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 117, 618
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 4 cut(s) 35, 41, 47, 361
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 1 cut(s) 627
HphI GGTGA 2 cut(s) 550, 641
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 3 cut(s) 40, 46, 72
Hpy188III TCNNGA 4 cut(s) 32, 215, 431, 607
Hpy8I GTNNAC 1 cut(s) 676
HpyAV CCTTC 3 cut(s) 181, 584, 626
HpyCH4III ACNGT 3 cut(s) 91, 307, 334
HpyCH4V TGCA 6 cut(s) 53, 59, 117, 463, 515, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 2 cut(s) 183, 552
Hsp92II CATG 2 cut(s) 117, 618
HspAI GCGC 1 cut(s) 5
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 4 cut(s) 427, 433, 526, 555
LpnPI CCDG 6 cut(s) 17, 210, 451, 620, 640, 640
Lsp1109I GCAGC 3 cut(s) 208, 447, 535
LweI GCATC 4 cut(s) 62, 68, 208, 484
MaeIII GTNAC 2 cut(s) 85, 268
MalI GATC 4 cut(s) 429, 435, 528, 557
MboI GATC 4 cut(s) 427, 433, 526, 555
MboII GAAGA 3 cut(s) 28, 521, 575
MflI RGATCY 1 cut(s) 526
MnlI CCTC 6 cut(s) 37, 132, 439, 472, 483, 637
MseI TTAA 3 cut(s) 75, 294, 675
MspI CCGG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 550
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeII GATC 4 cut(s) 427, 433, 526, 555
NlaIII CATG 2 cut(s) 117, 618
NlaIV GGNNCC 2 cut(s) 98, 350
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 2 cut(s) 117, 618
PciI ACATGT 1 cut(s) 614
PctI GAATGC 1 cut(s) 550
PfeI GAWTC 4 cut(s) 35, 41, 47, 361
Pfl23II CGTACG 1 cut(s) 91
PkrI GCNGC 3 cut(s) 223, 462, 550
PscI ACATGT 1 cut(s) 614
PspLI CGTACG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 98, 350
PspPI GGNCC 2 cut(s) 96, 349
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 3 cut(s) 93, 613, 641
RsaNI GTAC 3 cut(s) 92, 612, 640
SaqAI TTAA 3 cut(s) 75, 294, 675
SatI GCNGC 3 cut(s) 222, 461, 549
Sau3AI GATC 4 cut(s) 427, 433, 526, 555
Sau96I GGNCC 2 cut(s) 96, 349
SetI ASST 5 cut(s) 124, 252, 329, 462, 570
SfaNI GCATC 4 cut(s) 62, 68, 208, 484
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
TaaI ACNGT 3 cut(s) 91, 307, 334
TaqI TCGA 3 cut(s) 364, 430, 586
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 4 cut(s) 35, 41, 47, 361
Tru1I TTAA 3 cut(s) 75, 294, 675
Tru9I TTAA 3 cut(s) 75, 294, 675
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 3 cut(s) 221, 460, 548
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 557, 566
TspRI CASTG 1 cut(s) 339
XceI RCATGY 2 cut(s) 117, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.