Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006984

Physical Location & Seq

Genomic Coordinates Reverse (-)

37124944 .. 37125261

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0213900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTCCCGCAGGCACCTGCTTTGGCATTGTTGCAGCTCTCGCATCTCTTCGCAACGTCGCTGGCATTGAACGAGCTCGGAAATTGGCTTTTTGTAGTCGGGTACCACCTCACAGTATCCGGCATACAGATACTTGCAGTTTTGAAGACCGATGCCGTCCGCTCCCTCACAGATGCGGGCTATACAATCGGTATCGTATTCAGTACTACTGAGGGTTTCATCGCCAAAAGTGAAAGAGGTAAGCAAAACCGAGGAAGAGAAGACGATGAAGAAGAAGAGAAAAGGAAACCTAGCTTTCATGAACTCCATGCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

5.74

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT1G70490 AT2G47170 AT2G47170 AT2G47170 AT3G62290 AT3G62290 AT3G62290
prunus_persica	Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1 Prupe.1G109200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0426591
rosa_rugosa	Rorug04G0213800 Rorug04G0213900
rosa_samantha	Rh4AG268900 Rh4BG275200 Rh4CG289500
rosa_wichuraiana	Rw4G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	25
Acc65I	GGTACC	1 cut(s)	102
AccB1I	GGYRCC	2 cut(s)	13, 102
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	3 cut(s)	8, 160, 176
AfaI	GTAC	2 cut(s)	104, 205
AgsI	TTSAA	2 cut(s)	70, 145
AluBI	AGCT	3 cut(s)	37, 76, 294
AluI	AGCT	3 cut(s)	37, 76, 294
Alw21I	GWGCWC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	34
Asp718I	GGTACC	1 cut(s)	102
BanI	GGYRCC	2 cut(s)	13, 102
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	2 cut(s)	152, 267
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmcAI	AGTACT	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	15, 104
BmsI	GCATC	3 cut(s)	52, 142, 163
BpiI	GAAGAC	2 cut(s)	152, 267
BsaJI	CCNNGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	46
BshNI	GGYRCC	2 cut(s)	13, 102
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	3 cut(s)	8, 160, 176
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	15, 104
BspMI	ACCTGC	1 cut(s)	25
BspT107I	GGYRCC	2 cut(s)	13, 102
BsrBI	CCGCTC	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	3 cut(s)	53, 250, 270
BstC8I	GCNNGC	3 cut(s)	12, 63, 178
BstDEI	CTNAG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	152, 267
BsuI	GTATCC	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	12, 63, 178
CciI	TCATGA	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	103, 204
CviAII	CATG	2 cut(s)	299, 308
CviJI	RGCY	5 cut(s)	37, 76, 88, 180, 294
CviKI_1	RGCY	5 cut(s)	37, 76, 88, 180, 294
CviQI	GTAC	2 cut(s)	103, 204
DdeI	CTNAG	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	53, 250, 270
EarI	CTCTTC	3 cut(s)	53, 250, 270
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	2 cut(s)	302, 311
FaiI	YATR	4 cut(s)	125, 183, 300, 309
FatI	CATG	2 cut(s)	298, 307
FauI	CCCGC	2 cut(s)	15, 169
Fnu4HI	GCNGC	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	35
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	302, 311
HpaII	CCGG	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	34, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	302, 311
KpnI	GGTACC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	30, 47, 133
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	3 cut(s)	52, 142, 163
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	56
MbiI	CCGCTC	1 cut(s)	162
MboII	GAAGA	7 cut(s)	40, 157, 267, 272, 281, 284, 287
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	82
MnlI	CCTC	5 cut(s)	119, 176, 205, 230, 245
MspI	CCGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	302, 311
NlaIV	GGNNCC	2 cut(s)	15, 104
PagI	TCATGA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	15, 104
RsaI	GTAC	2 cut(s)	104, 205
RsaNI	GTAC	2 cut(s)	103, 204
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	35
ScaI	AGTACT	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	19, 39, 59, 78, 111, 241, 292, 296
SfaNI	GCATC	3 cut(s)	52, 142, 163
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	3 cut(s)	8, 160, 176
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	59
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	203
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	208, 282, 287, 315
XspI	CTAG	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.