Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006340

Physical Location & Seq

Genomic Coordinates Forward (+)

8503217 .. 8505460

Gene Structure 2244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCATTTTCCACTTGTTTCGGCTTGGAACAAGAGAAGGAGAAGCAAATCATATGATACGGATCCATGTACGTTCCTTTTCTCCATCATCTTCGCCAGATGGCATAAAAGGGTCTACAGAACAGCAGAATGCTGGCAAATCGAAGATCAGGCTTCTCAGCCAAGGAAGCGAAGATTCGGGTCATCAGTTTATACCCTCAAGGAGATGGAGGAGGCCACAAGTTCTTTCAGTGATGAGAATCTCCTCGGTAAAGGAGGCTTTGGCCGAGTTTACCAAGGCACTTTAAAAACAGGAGAGGTTGTTGCAATCAAGAAGATGGATTTACCTACGTTTAAAAAGGCTGACGGAGAAAGAGAATTTCGTGTGGAGGTGGATATCTTGAGCAGACTCGACCACCCAAATCTGGTCTCTTTGATCGGCTATTGTGCAGATGGGAAACACCGGTTCCTAGTATATGAATATATGCAAAATGGAAACCTGCAAGATCATTTGAATGGAATCAAAGAAGCAAAAATAAGCTGGCCAATAAGGCTCAGAATTGCACTAGGAGCAGCAAAAGGACTCGCGTATCTCCATTCAAGTTCTTCTGTTGGGATTCCAATTGTTCACAGAGACTTCAAATCCACCAACGTTCTACTAGACTCCAATTATAATGCAAAGATATCCGACTTTGGACTAGCAAAGTTGATGCCAGAAGGAAAGGATACTTGTGTCACAGCAAGAGTTCTAGGAACATTCGGCTATTTCGACCCAGAATATACATCGACAGGTAAACTTACTCTACAAAGCGACATTTATGCATTTGGGGTTGTGCTGCTAGAACTACTTACTGGACGCAGAGCAGTTGACTTAACTCAGGGCCCAAATGAACAGAACCTGGTGCTACAGGTTAGGAATATACTGAATGATAGAAAGAAATTGCGTAAGGTTATAGATGTCGAGCTGCCTCGGAATTCATACAGCATGGAAGCTATAACCATGTTTGCTGATCTAGCATCACGGTGCATCCGTATAGAGAGTAAAGAGCGACCTTCAGTGATGGATTGTGTTAAGGAACTGCAACTAATTATCTACACAAACTCGAAGGGTGGTTTGGGTGGGACGATTCCTACATTCAGAAGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

375

Amino Acids

42.54

Weight (kDa)

9.38

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 351	5.8e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 353	9.5e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030
fragaria_vesca	FvH4_4g34900 FvH4_4g34900 FvH4_4g34900 FvH4_4g34900
malus_domestica	MD13G1088100.v1.1 MD16G1088500.v1.1
prunus_persica	Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1
pyrus_communis	pycom13g07590 pycom16g07570
rosa_chinensis	RchiOBHm_Chr4g0444341
rosa_laevigata	RLG00000005839
rosa_multiflora	Rmu_sc0002841.1_g000011
rosa_roxburghii	Rroxscaffold_5G00384880
rosa_rugosa	Rorug04G0351600 Rorug04G0351700
rosa_samantha	Rh4AG412400 Rh4BG423900 Rh4DG419100
rosa_wichuraiana	Rw4G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	486
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	566
AclI	AACGTT	1 cut(s)	630
AclWI	GGATC	2 cut(s)	56, 69
AcoI	YGGCCR	2 cut(s)	262, 521
AcsI	RAATTY	2 cut(s)	356, 952
AcuI	CTGAAG	1 cut(s)	1017
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	3 cut(s)	493, 579, 619
AjnI	CCWGG	1 cut(s)	876
AjuI	GAANNNNNNNTTGG	2 cut(s)	1076, 1108
AluBI	AGCT	3 cut(s)	519, 943, 971
AluI	AGCT	3 cut(s)	519, 943, 971
Alw26I	GTCTC	2 cut(s)	412, 606
AlwI	GGATC	2 cut(s)	56, 69
AlwNI	CAGNNNCTG	1 cut(s)	877
AoxI	GGCC	4 cut(s)	213, 262, 521, 859
ApaI	GGGCCC	1 cut(s)	863
ApeKI	GCWGC	3 cut(s)	551, 814, 943
ApoI	RAATTY	2 cut(s)	356, 952
AsiGI	ACCGGT	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	859, 860
BaeGI	GKGCMC	1 cut(s)	863
BaeI	ACNNNNGTAYC	4 cut(s)	551, 584, 696, 729
BalI	TGGCCA	1 cut(s)	523
BamHI	GGATCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	863
BbvI	GCAGC	3 cut(s)	563, 801, 930
BccI	CCATC	6 cut(s)	92, 93, 199, 310, 425, 1033
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciT130I	CCWGG	1 cut(s)	878
BciVI	GTATCC	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	412, 606
BfaI	CTAG	8 cut(s)	449, 545, 638, 677, 728, 818, 992, 1126
BfmI	CTRYAG	2 cut(s)	115, 884
BfuAI	ACCTGC	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	697
BglI	GCCNNNNNGGC	1 cut(s)	529
BisI	GCNGC	3 cut(s)	552, 815, 944
BlsI	GCNGC	3 cut(s)	553, 816, 945
Bme1390I	CCNGG	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	859, 860
BmiI	GGNNCC	3 cut(s)	63, 446, 861
BmrFI	CCNGG	1 cut(s)	878
BmsI	GCATC	3 cut(s)	678, 1004, 1014
BpuEI	CTTGAG	2 cut(s)	182, 400
BsaBI	GATNNNNATC	2 cut(s)	60, 237
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	4 cut(s)	161, 244, 274, 947
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	835
Bse8I	GATNNNNATC	2 cut(s)	60, 237
BseBI	CCWGG	1 cut(s)	878
BseDI	CCNNGG	4 cut(s)	161, 244, 274, 947
BseGI	GGATG	1 cut(s)	1005
BseJI	GATNNNNATC	2 cut(s)	60, 237
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	170, 547, 869
BseNI	ACTGG	1 cut(s)	835
BseRI	GAGGAG	2 cut(s)	224, 233
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	3 cut(s)	563, 801, 930
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	4 cut(s)	215, 264, 523, 861
BshTI	ACCGGT	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	1114
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	412, 606
BsmFI	GGGAC	1 cut(s)	1114
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	4 cut(s)	215, 264, 523, 861
Bso31I	GGTCTC	1 cut(s)	412
Bsp120I	GGGCCC	1 cut(s)	859
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	5 cut(s)	61, 145, 414, 484, 988
BspANI	GGCC	4 cut(s)	215, 264, 523, 861
BspCNI	CTCAG	3 cut(s)	169, 546, 868
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	3 cut(s)	63, 446, 861
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	56, 69
BspTNI	GGTCTC	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	835
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	4 cut(s)	161, 244, 274, 947
BssMI	GATC	5 cut(s)	61, 145, 414, 484, 988
BssT1I	CCWWGG	2 cut(s)	161, 274
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	1 cut(s)	1002
BstC8I	GCNNGC	2 cut(s)	134, 521
BstDEI	CTNAG	3 cut(s)	156, 533, 855
BstF5I	GGATG	1 cut(s)	1005
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	5 cut(s)	64, 148, 417, 487, 991
BstMAI	GTCTC	2 cut(s)	412, 606
BstMBI	GATC	5 cut(s)	61, 145, 414, 484, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 529, 548, 992
BstNI	CCWGG	1 cut(s)	878
BstSCI	CCNGG	1 cut(s)	876
BstSFI	CTRYAG	2 cut(s)	115, 884
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	563, 801, 930
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	4 cut(s)	215, 264, 523, 861
BtsCI	GGATG	1 cut(s)	1005
BtsIMutI	CAGTG	2 cut(s)	235, 1041
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	134, 521
CaiI	CAGNNNCTG	1 cut(s)	877
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	2 cut(s)	859, 860
CseI	GACGC	1 cut(s)	843
CsiI	ACCWGGT	1 cut(s)	876
Csp6I	GTAC	1 cut(s)	69
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	3 cut(s)	66, 964, 979
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	3 cut(s)	156, 533, 855
DpnI	GATC	5 cut(s)	63, 147, 416, 486, 990
DpnII	GATC	5 cut(s)	61, 145, 414, 484, 988
DraI	TTTAAA	2 cut(s)	285, 334
EaeI	YGGCCR	2 cut(s)	262, 521
Eco130I	CCWWGG	2 cut(s)	161, 274
Eco24I	GRGCYC	1 cut(s)	863
Eco31I	GGTCTC	1 cut(s)	412
Eco32I	GATATC	2 cut(s)	376, 663
Eco57I	CTGAAG	1 cut(s)	1017
EcoO109I	RGGNCCY	1 cut(s)	859
EcoRI	GAATTC	1 cut(s)	952
EcoRII	CCWGG	1 cut(s)	876
EcoRV	GATATC	2 cut(s)	376, 663
EcoT14I	CCWWGG	2 cut(s)	161, 274
EcoT22I	ATGCAT	2 cut(s)	6, 802
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	2 cut(s)	161, 274
FaeI	CATG	3 cut(s)	69, 967, 982
FaqI	GGGAC	1 cut(s)	1114
FatI	CATG	3 cut(s)	65, 963, 978
FauNDI	CATATG	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	552, 815, 944
FokI	GGATG	1 cut(s)	992
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	3 cut(s)	552, 815, 944
FspBI	CTAG	8 cut(s)	449, 545, 638, 677, 728, 818, 992, 1126
GluI	GCNGC	3 cut(s)	552, 815, 944
HaeIII	GGCC	4 cut(s)	215, 264, 523, 861
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	1 cut(s)	843
Hin1II	CATG	3 cut(s)	69, 967, 982
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HinfI	GANTC	8 cut(s)	174, 238, 387, 498, 561, 595, 641, 1105
HpaII	CCGG	1 cut(s)	442
Hpy166II	GTNNAC	5 cut(s)	115, 271, 607, 773, 847
Hpy188I	TCNGA	4 cut(s)	536, 667, 951, 1118
Hpy188III	TCNNGA	2 cut(s)	310, 379
Hpy8I	GTNNAC	5 cut(s)	115, 271, 607, 773, 847
HpyAV	CCTTC	5 cut(s)	30, 689, 1041, 1078, 1113
HpyCH4III	ACNGT	1 cut(s)	1002
HpyCH4IV	ACGT	3 cut(s)	71, 329, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 529, 548, 992
HpyF3I	CTNAG	3 cut(s)	156, 533, 855
HpySE526I	ACGT	3 cut(s)	71, 329, 630
Hsp92II	CATG	3 cut(s)	69, 967, 982
Kzo9I	GATC	5 cut(s)	61, 145, 414, 484, 988
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	3 cut(s)	563, 801, 930
LweI	GCATC	3 cut(s)	678, 1004, 1014
MabI	ACCWGGT	1 cut(s)	876
MaeI	CTAG	8 cut(s)	449, 545, 638, 677, 728, 818, 992, 1126
MaeII	ACGT	3 cut(s)	71, 329, 630
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	5 cut(s)	63, 147, 416, 486, 990
MboI	GATC	5 cut(s)	61, 145, 414, 484, 988
MboII	GAAGA	5 cut(s)	82, 155, 183, 325, 576
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	7 cut(s)	356, 537, 600, 646, 917, 952, 1065
MluNI	TGGCCA	1 cut(s)	523
MlyI	GAGTC	3 cut(s)	381, 555, 635
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	8 cut(s)	202, 205, 206, 248, 254, 289, 361, 957
Mox20I	TGGCCA	1 cut(s)	523
Mph1103I	ATGCAT	2 cut(s)	6, 802
MscI	TGGCCA	1 cut(s)	523
MseI	TTAA	4 cut(s)	284, 333, 851, 1050
MslI	CAYNNNNRTG	2 cut(s)	492, 1000
Msp20I	TGGCCA	1 cut(s)	523
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	878
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	878
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	166, 529, 548, 992
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	5 cut(s)	61, 145, 414, 484, 988
NlaIII	CATG	3 cut(s)	69, 967, 982
NlaIV	GGNNCC	3 cut(s)	63, 446, 861
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	712
NsiI	ATGCAT	2 cut(s)	6, 802
PcsI	WCGNNNNNNNCGW	2 cut(s)	744, 1006
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	5 cut(s)	174, 238, 498, 595, 1105
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	553, 816, 945
PleI	GAGTC	3 cut(s)	381, 555, 635
PpsI	GAGTC	3 cut(s)	381, 555, 635
PsiI	TTATAA	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	876
PspGI	CCWGG	1 cut(s)	876
PspN4I	GGNNCC	3 cut(s)	63, 446, 861
PspOMI	GGGCCC	1 cut(s)	859
PspPI	GGNCC	2 cut(s)	859, 860
PstNI	CAGNNNCTG	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	2 cut(s)	492, 1000
SaqAI	TTAA	4 cut(s)	284, 333, 851, 1050
SatI	GCNGC	3 cut(s)	552, 815, 944
Sau3AI	GATC	5 cut(s)	61, 145, 414, 484, 988
Sau96I	GGNCC	2 cut(s)	859, 860
SchI	GAGTC	3 cut(s)	381, 555, 635
ScrFI	CCNGG	1 cut(s)	878
SduI	GDGCHC	1 cut(s)	863
SexAI	ACCWGGT	1 cut(s)	876
SfaNI	GCATC	3 cut(s)	678, 1004, 1014
SfcI	CTRYAG	2 cut(s)	115, 884
SmiMI	CAYNNNNRTG	2 cut(s)	492, 1000
SmlI	CTYRAG	2 cut(s)	197, 379
SmoI	CTYRAG	2 cut(s)	197, 379
Sse9I	AATT	7 cut(s)	356, 537, 600, 646, 917, 952, 1065
SspMI	CTAG	8 cut(s)	449, 545, 638, 677, 728, 818, 992, 1126
StyD4I	CCNGG	1 cut(s)	876
StyI	CCWWGG	2 cut(s)	161, 274
TaaI	ACNGT	1 cut(s)	1002
TaiI	ACGT	3 cut(s)	74, 332, 633
TaqI	TCGA	6 cut(s)	141, 390, 747, 764, 939, 1082
TasI	AATT	7 cut(s)	356, 537, 600, 646, 917, 952, 1065
TfiI	GAWTC	5 cut(s)	174, 238, 498, 595, 1105
Tru1I	TTAA	4 cut(s)	284, 333, 851, 1050
Tru9I	TTAA	4 cut(s)	284, 333, 851, 1050
TscAI	CASTG	2 cut(s)	235, 1041
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	3 cut(s)	551, 814, 943
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	3 cut(s)	471, 882, 945
TspGWI	ACGGA	3 cut(s)	74, 360, 998
TspRI	CASTG	2 cut(s)	235, 1041
XapI	RAATTY	2 cut(s)	356, 952
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	8 cut(s)	449, 545, 638, 677, 728, 818, 992, 1126
Zsp2I	ATGCAT	2 cut(s)	6, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.