Rw4G035420
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
62223006 .. 62224897
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035420.1

Sequence Viewer

Length: 1086 bp
ATGCCTTTTGGTTTAGTCTCAGCATGGAACAAGCGCAGAAGGTCCAAATCCTATGACCACACAGACCCTTGGACTTATAAGCCAGTGGAGTTCTGGCAACTAAATGATCAAACACCTCAACAAACGAAAAGGCACCATCATGGCTCTTCAGTGTTTACACTCAAAGAAATGGACGAGGCAACATCTTCATTCAGTGACAAGAACTTTCTTGGGAAAGGAGGATTTGGCCGCGTATATAGAGGAACTTTGCGCTCAGGAGAGGTTGTAGCAATTAAAAAGATGGAGCTGCCTCCCTTTAAAGCAGCTGACGGAGAACGAGAATTTCGAGTAGAAGTAGACATCTTGAGCAGACTTGATCACCCAAATTTGGTTTCTTTGATAGGCTATTGTGCTGATGGCAAGCACCGGTTTTTAGTATATGAATACCTGCAGAAAGGGAACCTGCAAGATCACTTAAATGGAATTAATGAGAAACACAAAATGGGTTGGCCTCAAAGGCTCAGAGTGGCACTTGGAGCAGCAAGGGGCTTAGCATATCTACATTCGAGTTCAACTCCTATTGTTCACAGAGATTTCAAATCCACCAACATTCTTTTAGATGCCAACTTGAAGCAAAAGGATATAGCTGAAATGTTGATAACTGTTCTGCAGATATCCGATTTTGGGCTTGCCAAGTTGATGCCAGAGGGAAAGGAAATGTATGTGACTGCTAGAGTACTTGGCACATTCGGCTATTTTGATCCGGAGTATACATCGACAGGAAAACTCACTTTACAGAGTGATGTTTATGCATTTGGAGTGGTTCTTCTTGAACTTCTGACTGGACGTCAAGCCCTGGACCTAAACCAAGGACCAAATGATCAAAATCTTGTACTACAGGTAAAGCACATATTAAATGATCGGAAGAAGCTGCGTAAGGTCATAGATCCTGAGCTGGGTCGAAGTTCATACACCATGGAATCTATAGTTATGTTTGCAAACCTGGCATCACGATGTGTGCGTCCTGACAGCAGTGAAAGACCCTCCATGGCTGAATGTGTAAAAGAACTGCAGTTGATTATCATTACAAATGCAAAAGGCTTGTGA

Protein Analysis

361

Amino Acids

40.92

Weight (kDa)

9.19

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 65 - 348 3.4e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 68 - 350 1.2e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AatII GACGTC 1 cut(s) 829
Acc36I ACCTGC 2 cut(s) 435, 450
AccB1I GGYRCC 1 cut(s) 132
AccI GTMKAC 2 cut(s) 336, 749
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 734, 920
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 2 cut(s) 320, 364
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 826
AdeI CACNNNGTG 1 cut(s) 995
AfaI GTAC 2 cut(s) 717, 873
AfiI CCNNNNNNNGG 3 cut(s) 367, 663, 935
AgeI ACCGGT 1 cut(s) 405
AgsI TTSAA 4 cut(s) 552, 577, 610, 812
AhdI GACNNNNNGTC 1 cut(s) 825
AjnI CCWGG 2 cut(s) 834, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 5 cut(s) 286, 305, 626, 910, 934
AluI AGCT 5 cut(s) 286, 305, 626, 910, 934
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 2 cut(s) 734, 920
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 2 cut(s) 226, 488
ApeKI GCWGC 4 cut(s) 286, 302, 518, 910
ApoI RAATTY 2 cut(s) 320, 364
AseI ATTAAT 1 cut(s) 465
AsiGI ACCGGT 1 cut(s) 405
AspLEI GCGC 2 cut(s) 36, 252
AspS9I GGNCC 3 cut(s) 42, 838, 851
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 3 cut(s) 42, 838, 851
BanI GGYRCC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 273, 314, 530, 897
BccI CCATC 3 cut(s) 144, 274, 389
BciT130I CCWGG 2 cut(s) 836, 983
BclI TGATCA 3 cut(s) 106, 355, 859
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 5 cut(s) 428, 647, 875, 963, 1049
BfuAI ACCTGC 2 cut(s) 435, 450
BglI GCCNNNNNGGC 1 cut(s) 496
BisI GCNGC 5 cut(s) 229, 287, 303, 519, 911
BlpI GCTNAGC 1 cut(s) 529
BlsI GCNGC 5 cut(s) 230, 288, 304, 520, 912
BmcAI AGTACT 1 cut(s) 717
Bme1390I CCNGG 2 cut(s) 836, 983
Bme18I GGWCC 3 cut(s) 42, 838, 851
BmeRI GACNNNNNGTC 1 cut(s) 825
BmgT120I GGNCC 3 cut(s) 42, 838, 851
BmiI GGNNCC 2 cut(s) 134, 440
BmrFI CCNGG 2 cut(s) 836, 983
BmsI GCATC 3 cut(s) 589, 669, 995
BplI GAGNNNNNCTC 2 cut(s) 538, 570
Bpu10I CCTNAGC 2 cut(s) 253, 930
Bpu1102I GCTNAGC 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 864
BsaHI GRCGYC 1 cut(s) 826
BsaJI CCNNGG 5 cut(s) 68, 834, 847, 954, 1026
BsaWI WCCGGW 2 cut(s) 405, 742
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 663, 935
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 83, 826
Bse8I GATNNNNATC 1 cut(s) 864
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 2 cut(s) 836, 983
BseDI CCNNGG 5 cut(s) 68, 834, 847, 954, 1026
BseJI GATNNNNATC 1 cut(s) 864
BseLI CCNNNNNNNGG 3 cut(s) 367, 663, 935
BseMII CTCAG 4 cut(s) 33, 267, 514, 921
BseNI ACTGG 2 cut(s) 83, 826
BseXI GCAGC 4 cut(s) 273, 314, 530, 897
BseYI CCCAGC 1 cut(s) 934
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 228, 490
BshNI GGYRCC 1 cut(s) 132
BshTI ACCGGT 1 cut(s) 405
BsiSI CCGG 2 cut(s) 406, 743
BslI CCNNNNNNNGG 3 cut(s) 367, 663, 935
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 228, 490
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
Bsp1720I GCTNAGC 1 cut(s) 529
Bsp19I CCATGG 2 cut(s) 954, 1026
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 228, 490
BspCNI CTCAG 4 cut(s) 32, 266, 513, 922
BspEI TCCGGA 1 cut(s) 742
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 134, 440
BspMAI CTGCAG 3 cut(s) 432, 651, 1053
BspMI ACCTGC 2 cut(s) 435, 450
BspPI GGATC 2 cut(s) 734, 920
BspQI GCTCTTC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 2 cut(s) 83, 826
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 5 cut(s) 68, 834, 847, 954, 1026
BssMI GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
BssNAI GTATAC 1 cut(s) 750
BssNI GRCGYC 1 cut(s) 826
BssT1I CCWWGG 4 cut(s) 68, 847, 954, 1026
Bst1107I GTATAC 1 cut(s) 750
Bst2UI CCWGG 2 cut(s) 836, 983
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 826
BstC8I GCNNGC 2 cut(s) 401, 669
BstDEI CTNAG 5 cut(s) 19, 253, 500, 529, 930
BstDSI CCRYGG 2 cut(s) 954, 1026
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 2 cut(s) 36, 252
BstKTI GATC 7 cut(s) 109, 358, 451, 742, 862, 901, 928
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
BstMWI GCNNNNNNNGC 4 cut(s) 496, 515, 729, 983
BstNI CCWGG 2 cut(s) 836, 983
BstSCI CCNGG 2 cut(s) 834, 981
BstSFI CTRYAG 5 cut(s) 428, 647, 875, 963, 1049
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 273, 314, 530, 897
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
BstZ17I GTATAC 1 cut(s) 750
BsuRI GGCC 2 cut(s) 228, 490
BtgI CCRYGG 2 cut(s) 954, 1026
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 4 cut(s) 90, 156, 199, 1018
BveI ACCTGC 2 cut(s) 435, 450
Cac8I GCNNGC 2 cut(s) 401, 669
CfoI GCGC 2 cut(s) 36, 252
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 3 cut(s) 42, 838, 851
CseI GACGC 1 cut(s) 989
Csp6I GTAC 2 cut(s) 716, 872
CspAI ACCGGT 1 cut(s) 405
CviAII CATG 4 cut(s) 24, 140, 955, 1027
CviQI GTAC 2 cut(s) 716, 872
DdeI CTNAG 5 cut(s) 19, 253, 500, 529, 930
DpnI GATC 7 cut(s) 108, 357, 450, 741, 861, 900, 927
DpnII GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
DraI TTTAAA 1 cut(s) 298
DraIII CACNNNGTG 1 cut(s) 995
DriI GACNNNNNGTC 1 cut(s) 825
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 4 cut(s) 68, 847, 954, 1026
Eco32I GATATC 1 cut(s) 654
Eco47I GGWCC 3 cut(s) 42, 838, 851
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 834, 981
EcoRV GATATC 1 cut(s) 654
EcoT14I CCWWGG 4 cut(s) 68, 847, 954, 1026
EcoT22I ATGCAT 1 cut(s) 793
ErhI CCWWGG 4 cut(s) 68, 847, 954, 1026
FaeI CATG 4 cut(s) 27, 143, 958, 1030
FatI CATG 4 cut(s) 23, 139, 954, 1026
FbaI TGATCA 3 cut(s) 106, 355, 859
FblI GTMKAC 2 cut(s) 336, 749
Fnu4HI GCNGC 5 cut(s) 229, 287, 303, 519, 911
Fsp4HI GCNGC 5 cut(s) 229, 287, 303, 519, 911
FspBI CTAG 1 cut(s) 711
GlaI GCGC 2 cut(s) 35, 251
GluI GCNGC 5 cut(s) 229, 287, 303, 519, 911
GsaI CCCAGC 1 cut(s) 938
HaeIII GGCC 2 cut(s) 228, 490
HapII CCGG 2 cut(s) 406, 743
HgaI GACGC 1 cut(s) 989
HhaI GCGC 2 cut(s) 36, 252
Hin1I GRCGYC 1 cut(s) 826
Hin1II CATG 4 cut(s) 27, 143, 958, 1030
Hin6I GCGC 2 cut(s) 34, 250
HinP1I GCGC 2 cut(s) 34, 250
HinfI GANTC 1 cut(s) 959
HpaII CCGG 2 cut(s) 406, 743
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 4 cut(s) 156, 337, 565, 750
Hpy188I TCNGA 4 cut(s) 503, 658, 819, 903
Hpy188III TCNNGA 7 cut(s) 255, 343, 743, 809, 929, 990, 1004
Hpy8I GTNNAC 4 cut(s) 156, 337, 565, 750
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 1 cut(s) 826
HpyCH4V TGCA 7 cut(s) 430, 445, 649, 791, 977, 1051, 1073
HpyF10VI GCNNNNNNNGC 4 cut(s) 496, 515, 729, 983
HpyF3I CTNAG 5 cut(s) 19, 253, 500, 529, 930
HpySE526I ACGT 1 cut(s) 826
Hsp92I GRCGYC 1 cut(s) 826
Hsp92II CATG 4 cut(s) 27, 143, 958, 1030
HspAI GCGC 2 cut(s) 34, 250
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 3 cut(s) 106, 355, 859
Kzo9I GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 283, 515
Lsp1109I GCAGC 4 cut(s) 273, 314, 530, 897
LweI GCATC 3 cut(s) 589, 669, 995
MaeI CTAG 1 cut(s) 711
MaeII ACGT 1 cut(s) 826
MaeIII GTNAC 2 cut(s) 194, 703
MalI GATC 7 cut(s) 108, 357, 450, 741, 861, 900, 927
MboI GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
MboII GAAGA 4 cut(s) 138, 177, 797, 916
MflI RGATCY 1 cut(s) 925
MluCI AATT 4 cut(s) 270, 320, 364, 462
MnlI CCTC 9 cut(s) 126, 169, 212, 233, 253, 300, 501, 679, 1033
Mph1103I ATGCAT 1 cut(s) 793
MroI TCCGGA 1 cut(s) 742
MseI TTAA 5 cut(s) 273, 297, 455, 465, 893
MslI CAYNNNNRTG 3 cut(s) 138, 456, 991
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 406, 743
MspR9I CCNGG 2 cut(s) 836, 983
MvaI CCWGG 2 cut(s) 836, 983
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 4 cut(s) 496, 515, 729, 983
NcoI CCATGG 2 cut(s) 954, 1026
NdeII GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
NlaIII CATG 4 cut(s) 27, 143, 958, 1030
NlaIV GGNNCC 2 cut(s) 134, 440
NmuCI GTSAC 2 cut(s) 194, 703
NsiI ATGCAT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 2 cut(s) 322, 997
PfeI GAWTC 1 cut(s) 959
PinAI ACCGGT 1 cut(s) 405
PkrI GCNGC 5 cut(s) 230, 288, 304, 520, 912
PshBI ATTAAT 1 cut(s) 465
PsiI TTATAA 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 834, 981
PspFI CCCAGC 1 cut(s) 934
PspGI CCWGG 2 cut(s) 834, 981
PspN4I GGNNCC 2 cut(s) 134, 440
PspPI GGNCC 3 cut(s) 42, 838, 851
PstI CTGCAG 3 cut(s) 432, 651, 1053
PsuI RGATCY 1 cut(s) 925
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 2 cut(s) 717, 873
RsaNI GTAC 2 cut(s) 716, 872
RseI CAYNNNNRTG 3 cut(s) 138, 456, 991
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 5 cut(s) 273, 297, 455, 465, 893
SatI GCNGC 5 cut(s) 229, 287, 303, 519, 911
Sau3AI GATC 7 cut(s) 106, 355, 448, 739, 859, 898, 925
Sau96I GGNCC 3 cut(s) 42, 838, 851
ScaI AGTACT 1 cut(s) 717
ScrFI CCNGG 2 cut(s) 836, 983
SfaNI GCATC 3 cut(s) 589, 669, 995
SfcI CTRYAG 5 cut(s) 428, 647, 875, 963, 1049
SinI GGWCC 3 cut(s) 42, 838, 851
SmiMI CAYNNNNRTG 3 cut(s) 138, 456, 991
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 270, 320, 364, 462
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 2 cut(s) 834, 981
StyI CCWWGG 4 cut(s) 68, 847, 954, 1026
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 1 cut(s) 829
TaqI TCGA 4 cut(s) 325, 545, 755, 940
TasI AATT 4 cut(s) 270, 320, 364, 462
TatI WGTACW 2 cut(s) 715, 871
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 959
Tru1I TTAA 5 cut(s) 273, 297, 455, 465, 893
Tru9I TTAA 5 cut(s) 273, 297, 455, 465, 893
TscAI CASTG 4 cut(s) 90, 156, 199, 1018
TseFI GTSAC 2 cut(s) 194, 703
TseI GCWGC 4 cut(s) 286, 302, 518, 910
Tsp45I GTSAC 2 cut(s) 194, 703
TspDTI ATGAA 3 cut(s) 177, 435, 936
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 4 cut(s) 90, 156, 199, 1018
VpaK11BI GGWCC 3 cut(s) 42, 838, 851
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 2 cut(s) 320, 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
XmiI GTMKAC 2 cut(s) 336, 749
XspI CTAG 1 cut(s) 711
ZraI GACGTC 1 cut(s) 827
ZrmI AGTACT 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.