Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006340

Physical Location & Seq

Genomic Coordinates Reverse (-)

6090950 .. 6092402

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1088500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCTTTTGGTCTGGTTTCGGCCTGGAGCAAGTGCCGGCGATCGAAGTCCCATTACCTTACAGACCCTTGGATTTATAAACCGGTGGAGTACTGGCAGCTCGAGGATCAAACCCCCCAACCCACCAAAAGACACCACCATGGTTCAGCAATTTTCACACTCAAAGAAATGGAAGAGGCATCATGTTCCTTCAGTGAGGAAAATTTGCTCGGAAAAGGAGGGTTTGGGCGTGTATACCGGGGAAATTTGCGGTCGGGAGAGGTTGTAGCGATAAAAAAAATGGAGCTGCCACCTTTTAAAGCAGCCGAGGGAGAACGAGAATTTCGGGTAGAAGTAGATATCTTGAGCAGACTTGAACACCCAAATTTGGTTTGTTTGATCGGCTATTGTGCTGACGGGAAGCAACGATTTCTGGTGTATGAATATATGCAGAAAGGGAACCTACAAGATCACTTAAACGCGATTGGGGAAGCGAAAATGGATTGGCCTCGACGGCTCAAGATGGCACTTGGAGCAGCAAGGGGACTAGCATATCTGCATTCTAGTTCTGCTGTAGGGATTCCTATTGTTCACAGAGATTTCAAATCCACCAATATTCTTTTAAGCGACAACTTTGAAGCAAAGATATCGGATTTTGGACTTGCCACGATGATGCCGGAGGGCCAGGAAATACAAGCGACTGCTAGAGTGCTCGGAACATTCGGCTATTTTGATCCCGAGTATACATCGAAAAAAAACAATGCTACACTTATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

253

Amino Acids

28.57

Weight (kDa)

8.26

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 246	1.9e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	67 - 244	3.8e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030
fragaria_vesca	FvH4_4g34900 FvH4_4g34900 FvH4_4g34900 FvH4_4g34900
malus_domestica	MD13G1088100.v1.1 MD16G1088500.v1.1
prunus_persica	Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1
pyrus_communis	pycom13g07590 pycom16g07570
rosa_chinensis	RchiOBHm_Chr4g0444341
rosa_laevigata	RLG00000005839
rosa_multiflora	Rmu_sc0002841.1_g000011
rosa_roxburghii	Rroxscaffold_5G00384880
rosa_rugosa	Rorug04G0351600 Rorug04G0351700
rosa_samantha	Rh4AG412400 Rh4BG423900 Rh4DG419100
rosa_wichuraiana	Rw4G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccI	GTMKAC	2 cut(s)	234, 722
AccII	CGCG	1 cut(s)	461
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	114, 707
AcsI	RAATTY	4 cut(s)	202, 244, 320, 364
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	356, 583, 617
AjnI	CCWGG	2 cut(s)	23, 663
AluBI	AGCT	2 cut(s)	100, 286
AluI	AGCT	2 cut(s)	100, 286
Alw21I	GWGCWC	1 cut(s)	693
AlwI	GGATC	2 cut(s)	114, 707
Ama87I	CYCGRG	2 cut(s)	101, 716
AoxI	GGCC	3 cut(s)	21, 485, 661
ApeKI	GCWGC	4 cut(s)	97, 286, 302, 515
ApoI	RAATTY	4 cut(s)	202, 244, 320, 364
AsiGI	ACCGGT	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	661
AsuC2I	CCSGG	1 cut(s)	239
AvaI	CYCGRG	2 cut(s)	101, 716
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	4 cut(s)	109, 273, 314, 527
BccI	CCATC	1 cut(s)	496
BceAI	ACGGC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	2 cut(s)	25, 665
BcnI	CCSGG	1 cut(s)	239
BfaI	CTAG	3 cut(s)	527, 543, 684
BfmI	CTRYAG	1 cut(s)	552
BglI	GCCNNNNNGGC	1 cut(s)	493
BisI	GCNGC	4 cut(s)	98, 287, 303, 516
BlsI	GCNGC	4 cut(s)	99, 288, 304, 517
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	25, 239, 665
BmeT110I	CYCGRG	2 cut(s)	101, 716
BmgT120I	GGNCC	1 cut(s)	661
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	3 cut(s)	25, 239, 665
BmsI	GCATC	2 cut(s)	188, 642
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	2 cut(s)	364, 482
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	68, 139, 238, 306
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse118I	RCCGGY	2 cut(s)	36, 82
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	25, 665
BseDI	CCNNGG	4 cut(s)	68, 139, 238, 306
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	109, 273, 314, 527
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	2 cut(s)	44, 254
BshFI	GGCC	3 cut(s)	23, 487, 663
BshTI	ACCGGT	1 cut(s)	82
BsiEI	CGRYCG	2 cut(s)	44, 254
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	101, 716
BsiSI	CCGG	4 cut(s)	37, 83, 238, 656
BslFI	GGGAC	2 cut(s)	34, 537
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	34, 537
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	23, 487, 663
BsoBI	CYCGRG	2 cut(s)	101, 716
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	41, 106, 378, 448, 712
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	3 cut(s)	23, 487, 663
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	114, 707
BsrFI	RCCGGY	2 cut(s)	36, 82
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	2 cut(s)	36, 82
BssECI	CCNNGG	4 cut(s)	68, 139, 238, 306
BssMI	GATC	5 cut(s)	41, 106, 378, 448, 712
BssNAI	GTATAC	2 cut(s)	235, 723
BssT1I	CCWWGG	2 cut(s)	68, 139
Bst1107I	GTATAC	2 cut(s)	235, 723
Bst2UI	CCWGG	2 cut(s)	25, 665
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	5 cut(s)	44, 109, 381, 451, 715
BstMBI	GATC	5 cut(s)	41, 106, 378, 448, 712
BstMCI	CGRYCG	2 cut(s)	44, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	493, 512
BstNI	CCWGG	2 cut(s)	25, 665
BstSCI	CCNGG	3 cut(s)	23, 237, 663
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	4 cut(s)	109, 273, 314, 527
BstZ17I	GTATAC	2 cut(s)	235, 723
BsuRI	GGCC	3 cut(s)	23, 487, 663
BtgI	CCRYGG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	38
Cfr10I	RCCGGY	2 cut(s)	36, 82
Cfr13I	GGNCC	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	91
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	2 cut(s)	140, 183
CviJI	RGCY	9 cut(s)	23, 100, 286, 305, 384, 487, 496, 663, 705
CviKI_1	RGCY	9 cut(s)	23, 100, 286, 305, 384, 487, 496, 663, 705
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	5 cut(s)	43, 108, 380, 450, 714
DpnII	GATC	5 cut(s)	41, 106, 378, 448, 712
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	68, 139
Eco32I	GATATC	2 cut(s)	340, 627
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	2 cut(s)	101, 716
EcoRII	CCWGG	2 cut(s)	23, 663
EcoRV	GATATC	2 cut(s)	340, 627
EcoT14I	CCWWGG	2 cut(s)	68, 139
ErhI	CCWWGG	2 cut(s)	68, 139
FaeI	CATG	2 cut(s)	143, 186
FaqI	GGGAC	2 cut(s)	34, 537
FatI	CATG	2 cut(s)	139, 182
FblI	GTMKAC	2 cut(s)	234, 722
Fnu4HI	GCNGC	4 cut(s)	98, 287, 303, 516
Fsp4HI	GCNGC	4 cut(s)	98, 287, 303, 516
FspBI	CTAG	3 cut(s)	527, 543, 684
GluI	GCNGC	4 cut(s)	98, 287, 303, 516
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	3 cut(s)	23, 487, 663
HapII	CCGG	4 cut(s)	37, 83, 238, 656
Hin1II	CATG	2 cut(s)	143, 186
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	4 cut(s)	37, 83, 238, 656
Hpy166II	GTNNAC	3 cut(s)	235, 571, 723
Hpy188I	TCNGA	3 cut(s)	212, 631, 695
Hpy188III	TCNNGA	4 cut(s)	255, 343, 499, 716
Hpy8I	GTNNAC	3 cut(s)	235, 571, 723
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	430, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	493, 512
Hsp92II	CATG	2 cut(s)	143, 186
KroI	GCCGGC	1 cut(s)	36
KroNI	GCCGGC	1 cut(s)	38
Kzo9I	GATC	5 cut(s)	41, 106, 378, 448, 712
LmnI	GCTCC	3 cut(s)	27, 283, 512
Lsp1109I	GCAGC	4 cut(s)	109, 273, 314, 527
LweI	GCATC	2 cut(s)	188, 642
MaeI	CTAG	3 cut(s)	527, 543, 684
MalI	GATC	5 cut(s)	43, 108, 380, 450, 714
MboI	GATC	5 cut(s)	41, 106, 378, 448, 712
MboII	GAAGA	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	5 cut(s)	150, 202, 244, 320, 364
MnlI	CCTC	8 cut(s)	97, 169, 190, 212, 253, 301, 498, 652
MroNI	GCCGGC	1 cut(s)	36
MseI	TTAA	3 cut(s)	297, 455, 602
MslI	CAYNNNNRTG	2 cut(s)	138, 650
MspI	CCGG	4 cut(s)	37, 83, 238, 656
MspR9I	CCNGG	3 cut(s)	25, 239, 665
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	25, 665
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	493, 512
NaeI	GCCGGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	5 cut(s)	41, 106, 378, 448, 712
NgoMIV	GCCGGC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	143, 186
NlaIV	GGNNCC	1 cut(s)	440
NmeAIII	GCCGAG	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	101
PctI	GAATGC	1 cut(s)	538
PdiI	GCCGGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	559
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	99, 288, 304, 517
Ple19I	CGATCG	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	23, 663
PspGI	CCWGG	2 cut(s)	23, 663
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	661
PspXI	VCTCGAGB	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	2 cut(s)	138, 650
SaqAI	TTAA	3 cut(s)	297, 455, 602
SatI	GCNGC	4 cut(s)	98, 287, 303, 516
Sau3AI	GATC	5 cut(s)	41, 106, 378, 448, 712
Sau96I	GGNCC	1 cut(s)	661
ScaI	AGTACT	1 cut(s)	92
ScrFI	CCNGG	3 cut(s)	25, 239, 665
SduI	GDGCHC	1 cut(s)	693
SetI	ASST	6 cut(s)	60, 102, 264, 288, 295, 444
SfaNI	GCATC	2 cut(s)	188, 642
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	138, 650
SmlI	CTYRAG	3 cut(s)	101, 343, 497
SmoI	CTYRAG	3 cut(s)	101, 343, 497
Sse9I	AATT	5 cut(s)	150, 202, 244, 320, 364
SsiI	CCGC	1 cut(s)	250
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	3 cut(s)	527, 543, 684
StyD4I	CCNGG	3 cut(s)	23, 237, 663
StyI	CCWWGG	2 cut(s)	68, 139
TaqI	TCGA	4 cut(s)	44, 102, 490, 728
TasI	AATT	5 cut(s)	150, 202, 244, 320, 364
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	3 cut(s)	297, 455, 602
Tru9I	TTAA	3 cut(s)	297, 455, 602
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	4 cut(s)	97, 286, 302, 515
TspDTI	ATGAA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	4 cut(s)	202, 244, 320, 364
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	234, 722
XspI	CTAG	3 cut(s)	527, 543, 684
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.