MD13G1088100.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
6173559 .. 6176010
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1088100.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGCCTTTCGGTTTAGTTTCGGCATGGAACAAGCGTCGGCGGTCGAAGTCCCACGACCTTACAGACCCTTGGATTTATAAACCGGTGGAGTACTGGCAGCTCGAGGATCAAACCCCCCAACCGACGAAAAGACACCATCATGGCTCGTCAATTTTCACACTCAAAGAAATGGAAGAGGCAACGTGTTCCTTCAGTGAAGAAAATCTGCTCGGAAAAGGAGGATTTGGGCGTGTATACCGGGGAACTTTGCGGTCAGGAGAGGTTGTAGCCATCAAGAAAATGGAGCTGCCTCCTTTCAAAGCAGCTGAGGGAGAACGAGAATTTCGGGTGGAAGTAGATATCTTGAGCAGACTTGAACACCCAAATCTGGTTTCTTTGATCGGCTATTGTGCTGACGGGAAGCAACGGTTTCTGGTGTATGAATATATGCAGAAAGGGAACCTGCAAGATCACTTAAATGGGATCGGGGAAGCGAAAATGGATTGGCCTCGACGGCTCAAGGTGGCACTTGGAGCAGCAAGGGGACTAGCGTATCTGCATTCTAGTTCTGCTGTCGGGATTCCTATTGTTCACAGAGATTTCAAATCCACCAATATTCTTTTAAGCGACGACTTTGAAGCAAAGATATCGGATTTTGGACTCGCCAAGATGATGCCGGAGGGCAAGGAAATATACGTGACTGCTAGAGTGCTCGGAACATTCGGCTATTTTGATCCCGAGTATACATCGACTGGAAAACTCACTTTACAAAGTGATGTTTATGCATTTGGAGTGGTTCTTCTTGAACTTCTGACTGGACGTCAAGCCGTTGACATTACCCTGGGACCAAACGATCAAAACCTAGTGCTACAGGTAAGACACATATTGAACGACAGGAAGAAACTGCGTAAGGTGATAGATTCTGAGCTGAGTCGAAGTTCATACACCATGGAATCTATAGCTATGTTTGCAAACCTGGCATCAAGATGTGTGCGTCCGGAGAGCAGTGAGAGACCCTCCATGGCAGAATGTGTGAAAGAGCTCCAGTTGAGTATCTATACAAATGCGAAAGGCTTGGGAGTGGCCGTGGCTCCTAACAAACACATGTTCTAA

Protein Analysis

364

Amino Acids

40.92

Weight (kDa)

8.69

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 65 - 339 7.6e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 67 - 341 9.3e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AatII GACGTC 1 cut(s) 802
Acc36I ACCTGC 1 cut(s) 450
AccI GTMKAC 2 cut(s) 234, 722
AccIII TCCGGA 1 cut(s) 976
AciI CCGC 2 cut(s) 40, 250
AclWI GGATC 3 cut(s) 114, 470, 707
AcoI YGGCCR 1 cut(s) 1062
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 799
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 2 cut(s) 182, 1083
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 6 cut(s) 298, 356, 583, 617, 785, 868
AhdI GACNNNNNGTC 1 cut(s) 798
AjnI CCWGG 2 cut(s) 819, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 6 cut(s) 100, 286, 305, 907, 941, 1021
AluI AGCT 6 cut(s) 100, 286, 305, 907, 941, 1021
Alw21I GWGCWC 2 cut(s) 693, 1023
Alw26I GTCTC 1 cut(s) 985
AlwI GGATC 3 cut(s) 114, 470, 707
Ama87I CYCGRG 2 cut(s) 101, 716
Aor13HI TCCGGA 1 cut(s) 976
AoxI GGCC 2 cut(s) 485, 1062
ApeKI GCWGC 4 cut(s) 97, 286, 302, 515
ApoI RAATTY 1 cut(s) 320
AsiGI ACCGGT 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 824
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 904
AvaI CYCGRG 2 cut(s) 101, 716
AvaII GGWCC 1 cut(s) 824
BaeI ACNNNNGTAYC 2 cut(s) 515, 548
BanII GRGCYC 1 cut(s) 1023
Bbv12I GWGCWC 2 cut(s) 693, 1023
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 109, 273, 314, 527
BccI CCATC 2 cut(s) 144, 278
BceAI ACGGC 3 cut(s) 509, 791, 1049
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciT130I CCWGG 2 cut(s) 821, 956
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 985
BfaI CTAG 4 cut(s) 527, 543, 684, 842
BfmI CTRYAG 2 cut(s) 848, 936
BfuAI ACCTGC 1 cut(s) 450
BglI GCCNNNNNGGC 1 cut(s) 493
BisI GCNGC 4 cut(s) 98, 287, 303, 516
BlsI GCNGC 4 cut(s) 99, 288, 304, 517
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 3 cut(s) 239, 821, 956
Bme18I GGWCC 1 cut(s) 824
BmeRI GACNNNNNGTC 1 cut(s) 798
BmeT110I CYCGRG 2 cut(s) 101, 716
BmgT120I GGNCC 1 cut(s) 824
BmiI GGNNCC 3 cut(s) 440, 825, 1071
BmrFI CCNGG 3 cut(s) 239, 821, 956
BmsI GCATC 2 cut(s) 642, 968
BplI GAGNNNNNCTC 2 cut(s) 980, 1012
BpmI CTGGAG 1 cut(s) 1007
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 364, 482
BpuMI CCSGG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 676
BsaHI GRCGYC 1 cut(s) 799
BsaI GGTCTC 1 cut(s) 985
BsaJI CCNNGG 7 cut(s) 68, 238, 819, 820, 927, 999, 1065
BsaWI WCCGGW 2 cut(s) 82, 976
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 1050, 1080
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 4 cut(s) 98, 736, 799, 1024
BseAI TCCGGA 1 cut(s) 976
BseBI CCWGG 2 cut(s) 821, 956
BseDI CCNNGG 7 cut(s) 68, 238, 819, 820, 927, 999, 1065
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 297, 894, 899
BseNI ACTGG 4 cut(s) 98, 736, 799, 1024
BseXI GCAGC 4 cut(s) 109, 273, 314, 527
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 2 cut(s) 487, 1064
BshTI ACCGGT 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 693, 1023
BsiHKCI CYCGRG 2 cut(s) 101, 716
BsiSI CCGG 4 cut(s) 83, 238, 656, 977
BslFI GGGAC 3 cut(s) 34, 537, 837
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 985
BsmFI GGGAC 3 cut(s) 34, 537, 837
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 2 cut(s) 487, 1064
Bso31I GGTCTC 1 cut(s) 985
BsoBI CYCGRG 2 cut(s) 101, 716
Bsp1286I GDGCHC 2 cut(s) 693, 1023
Bsp13I TCCGGA 1 cut(s) 976
Bsp143I GATC 6 cut(s) 106, 378, 448, 462, 712, 832
Bsp19I CCATGG 2 cut(s) 927, 999
BspACI CCGC 2 cut(s) 40, 250
BspANI GGCC 2 cut(s) 487, 1064
BspCNI CTCAG 3 cut(s) 298, 895, 900
BspEI TCCGGA 1 cut(s) 976
BspLI GGNNCC 3 cut(s) 440, 825, 1071
BspMI ACCTGC 1 cut(s) 450
BspPI GGATC 3 cut(s) 114, 470, 707
BspTNI GGTCTC 1 cut(s) 985
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 4 cut(s) 98, 736, 799, 1024
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 7 cut(s) 68, 238, 819, 820, 927, 999, 1065
BssMI GATC 6 cut(s) 106, 378, 448, 462, 712, 832
BssNAI GTATAC 2 cut(s) 235, 723
BssNI GRCGYC 1 cut(s) 799
BssT1I CCWWGG 3 cut(s) 68, 927, 999
Bst1107I GTATAC 2 cut(s) 235, 723
Bst2UI CCWGG 2 cut(s) 821, 956
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 799
BstBAI YACGTR 1 cut(s) 676
BstDEI CTNAG 3 cut(s) 306, 903, 908
BstDSI CCRYGG 3 cut(s) 927, 999, 1065
BstKTI GATC 6 cut(s) 109, 381, 451, 465, 715, 835
BstMAI GTCTC 1 cut(s) 985
BstMBI GATC 6 cut(s) 106, 378, 448, 462, 712, 832
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 4 cut(s) 493, 512, 947, 956
BstNI CCWGG 2 cut(s) 821, 956
BstNSI RCATGY 1 cut(s) 1087
BstSCI CCNGG 3 cut(s) 237, 819, 954
BstSFI CTRYAG 2 cut(s) 848, 936
BstV1I GCAGC 4 cut(s) 109, 273, 314, 527
BstZ17I GTATAC 2 cut(s) 235, 723
BsuRI GGCC 2 cut(s) 487, 1064
BtgI CCRYGG 3 cut(s) 927, 999, 1065
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 2 cut(s) 199, 991
BveI ACCTGC 1 cut(s) 450
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 824
CseI GACGC 2 cut(s) 23, 962
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 5 cut(s) 24, 140, 928, 1000, 1084
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 306, 903, 908
DpnI GATC 6 cut(s) 108, 380, 450, 464, 714, 834
DpnII GATC 6 cut(s) 106, 378, 448, 462, 712, 832
DriI GACNNNNNGTC 1 cut(s) 798
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 1 cut(s) 168
Eam1105I GACNNNNNGTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 3 cut(s) 68, 927, 999
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 985
Eco32I GATATC 2 cut(s) 340, 627
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 2 cut(s) 101, 716
EcoICRI GAGCTC 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 819, 954
EcoRV GATATC 2 cut(s) 340, 627
EcoT14I CCWWGG 3 cut(s) 68, 927, 999
EcoT22I ATGCAT 1 cut(s) 766
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 3 cut(s) 68, 927, 999
FaeI CATG 5 cut(s) 27, 143, 931, 1003, 1087
FaqI GGGAC 3 cut(s) 34, 537, 837
FatI CATG 5 cut(s) 23, 139, 927, 999, 1083
FblI GTMKAC 2 cut(s) 234, 722
Fnu4HI GCNGC 4 cut(s) 98, 287, 303, 516
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 4 cut(s) 98, 287, 303, 516
FspBI CTAG 4 cut(s) 527, 543, 684, 842
GluI GCNGC 4 cut(s) 98, 287, 303, 516
GsuI CTGGAG 1 cut(s) 1007
HaeIII GGCC 2 cut(s) 487, 1064
HapII CCGG 4 cut(s) 83, 238, 656, 977
HgaI GACGC 2 cut(s) 23, 962
Hin1I GRCGYC 1 cut(s) 799
Hin1II CATG 5 cut(s) 27, 143, 931, 1003, 1087
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 5 cut(s) 559, 639, 899, 910, 932
HpaII CCGG 4 cut(s) 83, 238, 656, 977
HphI GGTGA 1 cut(s) 904
Hpy166II GTNNAC 4 cut(s) 235, 571, 723, 811
Hpy188I TCNGA 5 cut(s) 212, 631, 695, 792, 904
Hpy188III TCNNGA 8 cut(s) 255, 274, 343, 556, 716, 782, 963, 977
Hpy8I GTNNAC 4 cut(s) 235, 571, 723, 811
Hpy99I CGWCG 4 cut(s) 39, 127, 495, 611
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 3 cut(s) 182, 675, 799
HpyCH4V TGCA 5 cut(s) 430, 445, 538, 764, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 493, 512, 947, 956
HpyF3I CTNAG 3 cut(s) 306, 903, 908
HpySE526I ACGT 3 cut(s) 182, 675, 799
Hsp92I GRCGYC 1 cut(s) 799
Hsp92II CATG 5 cut(s) 27, 143, 931, 1003, 1087
Kpn2I TCCGGA 1 cut(s) 976
Kzo9I GATC 6 cut(s) 106, 378, 448, 462, 712, 832
LmnI GCTCC 4 cut(s) 283, 512, 1026, 1075
Lsp1109I GCAGC 4 cut(s) 109, 273, 314, 527
LweI GCATC 2 cut(s) 642, 968
MaeI CTAG 4 cut(s) 527, 543, 684, 842
MaeII ACGT 3 cut(s) 182, 675, 799
MaeIII GTNAC 1 cut(s) 676
MalI GATC 6 cut(s) 108, 380, 450, 464, 714, 834
MboI GATC 6 cut(s) 106, 378, 448, 462, 712, 832
MboII GAAGA 4 cut(s) 185, 209, 770, 889
MhlI GDGCHC 2 cut(s) 693, 1023
MluCI AATT 2 cut(s) 150, 320
MlyI GAGTC 2 cut(s) 633, 919
MnlI CCTC 9 cut(s) 97, 169, 212, 253, 300, 301, 498, 652, 1006
Mph1103I ATGCAT 1 cut(s) 766
MroI TCCGGA 1 cut(s) 976
MseI TTAA 2 cut(s) 455, 602
MslI CAYNNNNRTG 3 cut(s) 138, 456, 964
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 4 cut(s) 83, 238, 656, 977
MspR9I CCNGG 3 cut(s) 239, 821, 956
Mva1269I GAATGC 1 cut(s) 538
MvaI CCWGG 2 cut(s) 821, 956
MwoI GCNNNNNNNGC 4 cut(s) 493, 512, 947, 956
NciI CCSGG 1 cut(s) 239
NcoI CCATGG 2 cut(s) 927, 999
NdeII GATC 6 cut(s) 106, 378, 448, 462, 712, 832
NlaIII CATG 5 cut(s) 27, 143, 931, 1003, 1087
NlaIV GGNNCC 3 cut(s) 440, 825, 1071
NmuCI GTSAC 1 cut(s) 676
NsiI ATGCAT 1 cut(s) 766
NspI RCATGY 1 cut(s) 1087
PaeR7I CTCGAG 1 cut(s) 101
PasI CCCWGGG 1 cut(s) 820
PciI ACATGT 1 cut(s) 1083
PctI GAATGC 1 cut(s) 538
PfeI GAWTC 3 cut(s) 559, 899, 932
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 4 cut(s) 99, 288, 304, 517
PleI GAGTC 2 cut(s) 633, 918
PpsI GAGTC 2 cut(s) 633, 918
Ppu21I YACGTR 1 cut(s) 676
PscI ACATGT 1 cut(s) 1083
PsiI TTATAA 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 1023
Psp6I CCWGG 2 cut(s) 819, 954
PspGI CCWGG 2 cut(s) 819, 954
PspN4I GGNNCC 3 cut(s) 440, 825, 1071
PspPI GGNCC 1 cut(s) 824
PspXI VCTCGAGB 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 3 cut(s) 138, 456, 964
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 2 cut(s) 455, 602
SatI GCNGC 4 cut(s) 98, 287, 303, 516
Sau3AI GATC 6 cut(s) 106, 378, 448, 462, 712, 832
Sau96I GGNCC 1 cut(s) 824
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 2 cut(s) 633, 919
ScrFI CCNGG 3 cut(s) 239, 821, 956
SduI GDGCHC 2 cut(s) 693, 1023
SfaNI GCATC 2 cut(s) 642, 968
SfcI CTRYAG 2 cut(s) 848, 936
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 824
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 3 cut(s) 138, 456, 964
SmlI CTYRAG 3 cut(s) 101, 343, 497
SmoI CTYRAG 3 cut(s) 101, 343, 497
Sse9I AATT 2 cut(s) 150, 320
SsiI CCGC 2 cut(s) 40, 250
SspI AATATT 1 cut(s) 595
SspMI CTAG 4 cut(s) 527, 543, 684, 842
SstI GAGCTC 1 cut(s) 1023
StyD4I CCNGG 3 cut(s) 237, 819, 954
StyI CCWWGG 3 cut(s) 68, 927, 999
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 3 cut(s) 185, 678, 802
TaqI TCGA 5 cut(s) 44, 102, 490, 728, 913
TasI AATT 2 cut(s) 150, 320
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 3 cut(s) 559, 899, 932
Tru1I TTAA 2 cut(s) 455, 602
Tru9I TTAA 2 cut(s) 455, 602
TscAI CASTG 2 cut(s) 199, 991
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 4 cut(s) 97, 286, 302, 515
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 2 cut(s) 435, 909
TspRI CASTG 2 cut(s) 199, 991
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 2 cut(s) 234, 722
XspI CTAG 4 cut(s) 527, 543, 684, 842
ZraI GACGTC 1 cut(s) 800
ZrmI AGTACT 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.