Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006340

Physical Location & Seq

Genomic Coordinates Forward (+)

56830414 .. 56833371

Gene Structure 2958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG423900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGCTGCCTCCCTTTAAAGCAGCTGACGGAGAACGAGAATTTCGGGTGGAAGTAGACATCTTGAGCAGACTTGATCACCCAAATTTGGTTTCTTTGATAGGCTATTGTGCTGATGGCAAGCACCGGTTTTTAGTATATGAATACCTGCAGAAAGGGAACCTGCAAGATCACTTAAATGGAATTAATGAGAAACACAAAATGGGTTGGCCTCAAAGGCTCAGAGTGGCACTTGGAGCAGCAAGGGGCTTAGCATATCTACATTCGAGTTCAACTCCTATTGTTCACAGAGATTTCAAATCCACCAACATTCTTTTAGATGCCAACTTTGAAGCAAAAATATCCGATTTTGGGCTTGCCAAGTTGATGCCAGAGGGAAAGGAAATGTATGTGACTGCTAGAGTACTTGGCACATTCGGCTATTTTGATCCGGAGTATACATCGACAGGAAAACTCACTTTACAGAGTGATGTTTATGCATTTGGAGTGGTTCTTCTTGAACTTCTGACTGGACGTCAAGCCCTGGACCTAAACCAAGGACCAAATGATCAAAATCTTGTACTACAGGTAAAGCACATATTAAATGATCGGAAGAAGCTGCGTAAGGTCATAGATCCTGAGCTGGGTCGAAGTTCATACACCATGGAATCTATAGTTATGTTTGCAAACCTGGCATCACGATGTGTGCGTCCTGACAGCAGTGAAAGACCCTCCATGGCTGAATGTGTAAAAGAACTGCAGTTGATTATCATTACAAATGCAAAAGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

257

Amino Acids

28.91

Weight (kDa)

7.73

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 246	1.1e-40	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	13 - 244	2.6e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030
fragaria_vesca	FvH4_4g34900 FvH4_4g34900 FvH4_4g34900 FvH4_4g34900
malus_domestica	MD13G1088100.v1.1 MD16G1088500.v1.1
prunus_persica	Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1
pyrus_communis	pycom13g07590 pycom16g07570
rosa_chinensis	RchiOBHm_Chr4g0444341
rosa_laevigata	RLG00000005839
rosa_multiflora	Rmu_sc0002841.1_g000011
rosa_roxburghii	Rroxscaffold_5G00384880
rosa_rugosa	Rorug04G0351600 Rorug04G0351700
rosa_samantha	Rh4AG412400 Rh4BG423900 Rh4DG419100
rosa_wichuraiana	Rw4G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	517
Acc36I	ACCTGC	2 cut(s)	156, 171
AccI	GTMKAC	2 cut(s)	57, 437
AccIII	TCCGGA	1 cut(s)	430
AclWI	GGATC	2 cut(s)	422, 608
AcsI	RAATTY	2 cut(s)	41, 85
AcyI	GRCGYC	1 cut(s)	514
AdeI	CACNNNGTG	1 cut(s)	683
AfaI	GTAC	2 cut(s)	405, 561
AfiI	CCNNNNNNNGG	3 cut(s)	88, 351, 623
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	273, 298, 332, 500
AhdI	GACNNNNNGTC	1 cut(s)	513
AjnI	CCWGG	2 cut(s)	522, 669
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	4 cut(s)	7, 26, 598, 622
AluI	AGCT	4 cut(s)	7, 26, 598, 622
AlwI	GGATC	2 cut(s)	422, 608
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	7, 23, 239, 598
ApoI	RAATTY	2 cut(s)	41, 85
AseI	ATTAAT	1 cut(s)	186
AsiGI	ACCGGT	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	526, 539
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	526, 539
BbvI	GCAGC	3 cut(s)	35, 251, 585
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	2 cut(s)	524, 671
BclI	TGATCA	2 cut(s)	76, 547
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	4 cut(s)	149, 563, 651, 737
BfuAI	ACCTGC	2 cut(s)	156, 171
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	8, 24, 240, 599
BlpI	GCTNAGC	1 cut(s)	250
BlsI	GCNGC	4 cut(s)	9, 25, 241, 600
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	2 cut(s)	524, 671
Bme18I	GGWCC	2 cut(s)	526, 539
BmeRI	GACNNNNNGTC	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	526, 539
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	524, 671
BmsI	GCATC	3 cut(s)	310, 357, 683
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	4 cut(s)	522, 535, 642, 714
BsaWI	WCCGGW	2 cut(s)	126, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 351, 623
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	2 cut(s)	524, 671
BseDI	CCNNGG	4 cut(s)	522, 535, 642, 714
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	3 cut(s)	88, 351, 623
BseMII	CTCAG	2 cut(s)	235, 609
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	3 cut(s)	35, 251, 585
BseYI	CCCAGC	1 cut(s)	622
BshFI	GGCC	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	127, 431
BslI	CCNNNNNNNGG	3 cut(s)	88, 351, 623
BsnI	GGCC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
Bsp1720I	GCTNAGC	1 cut(s)	250
Bsp19I	CCATGG	2 cut(s)	642, 714
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	234, 610
BspEI	TCCGGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	2 cut(s)	153, 741
BspMI	ACCTGC	2 cut(s)	156, 171
BspPI	GGATC	2 cut(s)	422, 608
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	4 cut(s)	522, 535, 642, 714
BssMI	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
BssNAI	GTATAC	1 cut(s)	438
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	3 cut(s)	535, 642, 714
Bst1107I	GTATAC	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	524, 671
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	122, 357
BstDEI	CTNAG	3 cut(s)	221, 250, 618
BstDSI	CCRYGG	2 cut(s)	642, 714
BstKTI	GATC	6 cut(s)	79, 172, 430, 550, 589, 616
BstMBI	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 236, 417, 671
BstNI	CCWGG	2 cut(s)	524, 671
BstSCI	CCNGG	2 cut(s)	522, 669
BstSFI	CTRYAG	4 cut(s)	149, 563, 651, 737
BstV1I	GCAGC	3 cut(s)	35, 251, 585
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BstZ17I	GTATAC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	2 cut(s)	642, 714
BtsI	GCAGTG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	706
BveI	ACCTGC	2 cut(s)	156, 171
Cac8I	GCNNGC	2 cut(s)	122, 357
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	526, 539
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	2 cut(s)	404, 560
CspAI	ACCGGT	1 cut(s)	126
CviAII	CATG	2 cut(s)	643, 715
CviQI	GTAC	2 cut(s)	404, 560
DdeI	CTNAG	3 cut(s)	221, 250, 618
DpnI	GATC	6 cut(s)	78, 171, 429, 549, 588, 615
DpnII	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
DraI	TTTAAA	1 cut(s)	19
DraIII	CACNNNGTG	1 cut(s)	683
DriI	GACNNNNNGTC	1 cut(s)	513
Eam1105I	GACNNNNNGTC	1 cut(s)	513
Eco130I	CCWWGG	3 cut(s)	535, 642, 714
Eco47I	GGWCC	2 cut(s)	526, 539
EcoRII	CCWGG	2 cut(s)	522, 669
EcoT14I	CCWWGG	3 cut(s)	535, 642, 714
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	3 cut(s)	535, 642, 714
FaeI	CATG	2 cut(s)	646, 718
FatI	CATG	2 cut(s)	642, 714
FbaI	TGATCA	2 cut(s)	76, 547
FblI	GTMKAC	2 cut(s)	57, 437
Fnu4HI	GCNGC	4 cut(s)	8, 24, 240, 599
Fsp4HI	GCNGC	4 cut(s)	8, 24, 240, 599
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	4 cut(s)	8, 24, 240, 599
GsaI	CCCAGC	1 cut(s)	626
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	2 cut(s)	127, 431
HgaI	GACGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	646, 718
HinfI	GANTC	1 cut(s)	647
HpaII	CCGG	2 cut(s)	127, 431
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	58, 286, 438
Hpy188I	TCNGA	4 cut(s)	224, 346, 507, 591
Hpy188III	TCNNGA	6 cut(s)	64, 431, 497, 617, 678, 692
Hpy8I	GTNNAC	3 cut(s)	58, 286, 438
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	6 cut(s)	151, 166, 479, 665, 739, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 236, 417, 671
HpyF3I	CTNAG	3 cut(s)	221, 250, 618
HpySE526I	ACGT	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	2 cut(s)	646, 718
Kpn2I	TCCGGA	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	76, 547
Kzo9I	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
LmnI	GCTCC	2 cut(s)	4, 236
Lsp1109I	GCAGC	3 cut(s)	35, 251, 585
LweI	GCATC	3 cut(s)	310, 357, 683
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	6 cut(s)	78, 171, 429, 549, 588, 615
MboI	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
MboII	GAAGA	2 cut(s)	485, 604
MflI	RGATCY	1 cut(s)	613
MluCI	AATT	3 cut(s)	41, 85, 183
MnlI	CCTC	4 cut(s)	21, 222, 367, 721
Mph1103I	ATGCAT	1 cut(s)	481
MroI	TCCGGA	1 cut(s)	430
MseI	TTAA	4 cut(s)	18, 176, 186, 581
MslI	CAYNNNNRTG	2 cut(s)	177, 679
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	127, 431
MspR9I	CCNGG	2 cut(s)	524, 671
MvaI	CCWGG	2 cut(s)	524, 671
MwoI	GCNNNNNNNGC	4 cut(s)	217, 236, 417, 671
NcoI	CCATGG	2 cut(s)	642, 714
NdeII	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
NlaIII	CATG	2 cut(s)	646, 718
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	391
NsiI	ATGCAT	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	647
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	9, 25, 241, 600
PshBI	ATTAAT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	522, 669
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	2 cut(s)	522, 669
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	526, 539
PstI	CTGCAG	2 cut(s)	153, 741
PsuI	RGATCY	1 cut(s)	613
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	405, 561
RsaNI	GTAC	2 cut(s)	404, 560
RseI	CAYNNNNRTG	2 cut(s)	177, 679
SaqAI	TTAA	4 cut(s)	18, 176, 186, 581
SatI	GCNGC	4 cut(s)	8, 24, 240, 599
Sau3AI	GATC	6 cut(s)	76, 169, 427, 547, 586, 613
Sau96I	GGNCC	2 cut(s)	526, 539
ScaI	AGTACT	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	524, 671
SfaNI	GCATC	3 cut(s)	310, 357, 683
SfcI	CTRYAG	4 cut(s)	149, 563, 651, 737
SinI	GGWCC	2 cut(s)	526, 539
SmiMI	CAYNNNNRTG	2 cut(s)	177, 679
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	3 cut(s)	41, 85, 183
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	522, 669
StyI	CCWWGG	3 cut(s)	535, 642, 714
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	3 cut(s)	266, 443, 628
TasI	AATT	3 cut(s)	41, 85, 183
TatI	WGTACW	2 cut(s)	403, 559
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	4 cut(s)	18, 176, 186, 581
Tru9I	TTAA	4 cut(s)	18, 176, 186, 581
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	4 cut(s)	7, 23, 239, 598
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	156, 624
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	2 cut(s)	526, 539
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	2 cut(s)	41, 85
XmiI	GTMKAC	2 cut(s)	57, 437
XspI	CTAG	1 cut(s)	399
ZraI	GACGTC	1 cut(s)	515
ZrmI	AGTACT	1 cut(s)	405
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.