Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006340

Physical Location & Seq

Genomic Coordinates Reverse (-)

5034772 .. 5036434

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07590.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAGAGGCAACATGTTCCTTCAGTGAAGAAAATCTGCTCGGGAAAGGAGGATTTGGGCGTGTATACCGGGGAACTTTGCGGTCAGGAGAGGTTGTAGCCATCAAGAAAATGGAGCTGCCACCCTTCAAAGCAGCAGAGGGAGAACGAGAATTTCGGGTGGAAGTAGATATCTTGAGCAGACTTGAACACCCAAATCTGGTTTCTTTGATCGGCTATTGTGCTGACGGGAAGCAACGGTTTCTGGTGTATGAATATATGCAGAAAGGGAACCTGCAAGATCACTTAAATGGGATCGGGGAAGCGAAAATGGATTGGCCTCGACGGCTCAAGGTGGCACTTGGAGCAGCAAGGGGACTAGCATATCTGCACTCTAGTTCTGCTGTTGGGATTCCTATTGTCCACAGAGATTTCAAATCCACCAATATTCTTTTAAGCGACAACTTTGAAATATCCGATTTTGGACTCGCCAAGATGATGCCGGAGGGCAAGGAAATATACGTGACTGCTAGAGTGCTCGGAACATTCGGCTATTTTGATCCCGAGTATACATCGACTGGAAAACTCACTTTACAAAGCGATGTTTATGCATTTGGAGTGGTTCTTCTTGAACTTCTGACTGGACGTCAAGCCGTTGACATTACCCTGGGACCAAACGATCAAAACCTAGTGCTACAGGTAAGACACATATTGAATGATAGGAAGAAACTGCGTAAGGTGATAGATTCTGAGTTGGGTCGAAGTTCATACAACATGGAATCTATAGCTATGTTTGCAAACCTGGCATCAAGATGTGTGCGTCCGGAGAGCAGTGAGAGACCCTCCATGGCAGAATGTGTAAAAGAGCTCCAGTTGATTATCTATACAAATGCGAAAGGCTTGGGAGTGGCTGTGGCTCCTAATAAACACATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

306

Amino Acids

33.99

Weight (kDa)

7.67

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030
fragaria_vesca	FvH4_4g34900 FvH4_4g34900 FvH4_4g34900 FvH4_4g34900
malus_domestica	MD13G1088100.v1.1 MD16G1088500.v1.1
prunus_persica	Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1
pyrus_communis	pycom13g07590 pycom16g07570
rosa_chinensis	RchiOBHm_Chr4g0444341
rosa_laevigata	RLG00000005839
rosa_multiflora	Rmu_sc0002841.1_g000011
rosa_roxburghii	Rroxscaffold_5G00384880
rosa_rugosa	Rorug04G0351600 Rorug04G0351700
rosa_samantha	Rh4AG412400 Rh4BG423900 Rh4DG419100
rosa_wichuraiana	Rw4G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	628
Acc36I	ACCTGC	1 cut(s)	282
AccI	GTMKAC	2 cut(s)	66, 548
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	302, 533
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	625
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	2 cut(s)	14, 909
AgsI	TTSAA	6 cut(s)	130, 188, 415, 449, 611, 694
AhdI	GACNNNNNGTC	1 cut(s)	624
AjnI	CCWGG	2 cut(s)	645, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	3 cut(s)	118, 767, 847
AluI	AGCT	3 cut(s)	118, 767, 847
Alw21I	GWGCWC	2 cut(s)	519, 849
Alw26I	GTCTC	1 cut(s)	811
AlwI	GGATC	2 cut(s)	302, 533
Ama87I	CYCGRG	2 cut(s)	41, 542
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	3 cut(s)	118, 134, 347
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	2 cut(s)	41, 542
AvaII	GGWCC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	849
Bbv12I	GWGCWC	2 cut(s)	519, 849
BbvI	GCAGC	3 cut(s)	105, 146, 359
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	341, 617
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	2 cut(s)	647, 782
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	811
BfaI	CTAG	4 cut(s)	359, 375, 510, 668
BfmI	CTRYAG	2 cut(s)	674, 762
BfuAI	ACCTGC	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	325
BisI	GCNGC	3 cut(s)	119, 135, 348
BlsI	GCNGC	3 cut(s)	120, 136, 349
Bme1390I	CCNGG	3 cut(s)	71, 647, 782
Bme18I	GGWCC	1 cut(s)	650
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmeT110I	CYCGRG	2 cut(s)	41, 542
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	3 cut(s)	272, 651, 897
BmrFI	CCNGG	3 cut(s)	71, 647, 782
BmsI	GCATC	2 cut(s)	468, 794
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BpmI	CTGGAG	1 cut(s)	833
BpuEI	CTTGAG	2 cut(s)	196, 314
BpuMI	CCSGG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	625
BsaI	GGTCTC	1 cut(s)	811
BsaJI	CCNNGG	4 cut(s)	70, 645, 646, 825
BsaWI	WCCGGW	1 cut(s)	802
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 876, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	3 cut(s)	562, 625, 850
BseAI	TCCGGA	1 cut(s)	802
BseBI	CCWGG	2 cut(s)	647, 782
BseDI	CCNNGG	4 cut(s)	70, 645, 646, 825
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	3 cut(s)	562, 625, 850
BseXI	GCAGC	3 cut(s)	105, 146, 359
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	519, 849
BsiHKCI	CYCGRG	2 cut(s)	41, 542
BsiSI	CCGG	3 cut(s)	70, 482, 803
BslFI	GGGAC	2 cut(s)	369, 663
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	811
BsmFI	GGGAC	2 cut(s)	369, 663
BsnI	GGCC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	811
BsoBI	CYCGRG	2 cut(s)	41, 542
Bsp1286I	GDGCHC	2 cut(s)	519, 849
Bsp13I	TCCGGA	1 cut(s)	802
Bsp143I	GATC	5 cut(s)	210, 280, 294, 538, 658
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	721
BspEI	TCCGGA	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	272, 651, 897
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	302, 533
BspTNI	GGTCTC	1 cut(s)	811
BsrI	ACTGG	3 cut(s)	562, 625, 850
BssECI	CCNNGG	4 cut(s)	70, 645, 646, 825
BssMI	GATC	5 cut(s)	210, 280, 294, 538, 658
BssNAI	GTATAC	2 cut(s)	67, 549
BssNI	GRCGYC	1 cut(s)	625
BssT1I	CCWWGG	1 cut(s)	825
Bst1107I	GTATAC	2 cut(s)	67, 549
Bst2UI	CCWGG	2 cut(s)	647, 782
Bst4CI	ACNGT	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	625
BstBAI	YACGTR	1 cut(s)	502
BstDEI	CTNAG	1 cut(s)	729
BstDSI	CCRYGG	1 cut(s)	825
BstKTI	GATC	5 cut(s)	213, 283, 297, 541, 661
BstMAI	GTCTC	1 cut(s)	811
BstMBI	GATC	5 cut(s)	210, 280, 294, 538, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 344, 773, 782
BstNI	CCWGG	2 cut(s)	647, 782
BstNSI	RCATGY	2 cut(s)	18, 913
BstSCI	CCNGG	3 cut(s)	69, 645, 780
BstSFI	CTRYAG	2 cut(s)	674, 762
BstV1I	GCAGC	3 cut(s)	105, 146, 359
BstZ17I	GTATAC	2 cut(s)	67, 549
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	594
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	2 cut(s)	31, 817
BveI	ACCTGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	650
CseI	GACGC	1 cut(s)	788
CviAII	CATG	4 cut(s)	15, 754, 826, 910
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	5 cut(s)	212, 282, 296, 540, 660
DpnII	GATC	5 cut(s)	210, 280, 294, 538, 658
DriI	GACNNNNNGTC	1 cut(s)	624
Eam1105I	GACNNNNNGTC	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	847
Eco130I	CCWWGG	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	849
Eco31I	GGTCTC	1 cut(s)	811
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	650
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	41, 542
EcoICRI	GAGCTC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	645, 780
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	4 cut(s)	18, 757, 829, 913
FaqI	GGGAC	2 cut(s)	369, 663
FatI	CATG	4 cut(s)	14, 753, 825, 909
FblI	GTMKAC	2 cut(s)	66, 548
Fnu4HI	GCNGC	3 cut(s)	119, 135, 348
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	3 cut(s)	119, 135, 348
FspBI	CTAG	4 cut(s)	359, 375, 510, 668
GluI	GCNGC	3 cut(s)	119, 135, 348
GsuI	CTGGAG	1 cut(s)	833
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	3 cut(s)	70, 482, 803
HgaI	GACGC	1 cut(s)	788
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	4 cut(s)	18, 757, 829, 913
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	4 cut(s)	391, 465, 725, 758
HpaII	CCGG	3 cut(s)	70, 482, 803
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	4 cut(s)	67, 403, 549, 637
Hpy188I	TCNGA	4 cut(s)	457, 521, 618, 730
Hpy188III	TCNNGA	8 cut(s)	43, 87, 106, 175, 542, 608, 789, 803
Hpy8I	GTNNAC	4 cut(s)	67, 403, 549, 637
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	31, 136
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	2 cut(s)	501, 625
HpyCH4V	TGCA	5 cut(s)	262, 277, 370, 590, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 344, 773, 782
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	2 cut(s)	501, 625
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	4 cut(s)	18, 757, 829, 913
Kpn2I	TCCGGA	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	210, 280, 294, 538, 658
LmnI	GCTCC	4 cut(s)	115, 344, 852, 901
Lsp1109I	GCAGC	3 cut(s)	105, 146, 359
LweI	GCATC	2 cut(s)	468, 794
MaeI	CTAG	4 cut(s)	359, 375, 510, 668
MaeII	ACGT	2 cut(s)	501, 625
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	5 cut(s)	212, 282, 296, 540, 660
MboI	GATC	5 cut(s)	210, 280, 294, 538, 658
MboII	GAAGA	4 cut(s)	17, 41, 596, 715
MhlI	GDGCHC	2 cut(s)	519, 849
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	459
MnlI	CCTC	6 cut(s)	44, 85, 133, 330, 478, 832
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	802
MseI	TTAA	2 cut(s)	287, 434
MslI	CAYNNNNRTG	2 cut(s)	288, 790
MspI	CCGG	3 cut(s)	70, 482, 803
MspR9I	CCNGG	3 cut(s)	71, 647, 782
MvaI	CCWGG	2 cut(s)	647, 782
MwoI	GCNNNNNNNGC	4 cut(s)	325, 344, 773, 782
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	825
NdeII	GATC	5 cut(s)	210, 280, 294, 538, 658
NlaIII	CATG	4 cut(s)	18, 757, 829, 913
NlaIV	GGNNCC	3 cut(s)	272, 651, 897
NmuCI	GTSAC	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	2 cut(s)	18, 913
PasI	CCCWGGG	1 cut(s)	646
PciI	ACATGT	2 cut(s)	14, 909
PfeI	GAWTC	3 cut(s)	391, 725, 758
PkrI	GCNGC	3 cut(s)	120, 136, 349
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
Ppu21I	YACGTR	1 cut(s)	502
PscI	ACATGT	2 cut(s)	14, 909
Psp124BI	GAGCTC	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	645, 780
PspGI	CCWGG	2 cut(s)	645, 780
PspN4I	GGNNCC	3 cut(s)	272, 651, 897
PspPI	GGNCC	1 cut(s)	650
RseI	CAYNNNNRTG	2 cut(s)	288, 790
SacI	GAGCTC	1 cut(s)	849
SaqAI	TTAA	2 cut(s)	287, 434
SatI	GCNGC	3 cut(s)	119, 135, 348
Sau3AI	GATC	5 cut(s)	210, 280, 294, 538, 658
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	3 cut(s)	71, 647, 782
SduI	GDGCHC	2 cut(s)	519, 849
SfaNI	GCATC	2 cut(s)	468, 794
SfcI	CTRYAG	2 cut(s)	674, 762
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	2 cut(s)	288, 790
SmlI	CTYRAG	2 cut(s)	175, 329
SmoI	CTYRAG	2 cut(s)	175, 329
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	4 cut(s)	359, 375, 510, 668
SstI	GAGCTC	1 cut(s)	849
StyD4I	CCNGG	3 cut(s)	69, 645, 780
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	2 cut(s)	504, 628
TaqI	TCGA	3 cut(s)	322, 554, 739
TasI	AATT	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	391, 725, 758
Tru1I	TTAA	2 cut(s)	287, 434
Tru9I	TTAA	2 cut(s)	287, 434
TscAI	CASTG	2 cut(s)	31, 817
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	3 cut(s)	118, 134, 347
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	267, 735
TspRI	CASTG	2 cut(s)	31, 817
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	2 cut(s)	18, 913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	66, 548
XspI	CTAG	4 cut(s)	359, 375, 510, 668
ZraI	GACGTC	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.