Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006340

Physical Location & Seq

Genomic Coordinates Forward (+)

32429137 .. 32432322

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34900.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCCTTTCGGTTTAGTCTCAGCATGGAACAAGCGCAGAAGGTCCAAATCTTATGACCATACAGGCCCTTGGGCATATAAGCCGGTGGAGTTCTGGCAACTCGATGATCAAACACCTCAACAGAAGAAAAGGCACCATCATGGCTCATCAGTGTTTACACTCAAAGAAATGGAAGAGGCAACATCTTCATTCAGTGACAAGAACTTTCTGGGGAAAGGAGGATTTGGCCGTGTATACAGAGGAACTTTGCGCTCAGGAGAGGTTGTAGCAATAAAAAAGATGGAGCTGCCTCCCTTAAAAGCAGCAGACGGAGAACGAGAATTTCGGGTAGAAGTAGACATCTTGAGCAGACTTGATCACCCAAATCTGGTTTCTCTGATAGGTTATTGTGCTGATGGCAAGCACCGGTTTTTAGTGTATGAATATCTGCAGAAAGGGAACCTGCAAGATCATTTAAATGGAATCAAAGAGAAACACAAAATGGGTTGGTCTCAAAGGCTCAGAGTGGCACTTGGATCAGCAAGGGGCTTAGCATATCTACATTCCAGTTCTGCCGTTGGAACTCCTATTGTTCACAGAGATTTCAAATCCACCAACATTCTTTTAGATGCCAACTTTGAAGCAAAGATATCTGATTTTGGGCTTGCCAAATTTATGCCAGAGGGAAAGGAAATGTACGTGACTGCCAGAGTACTTGGTACATTCGGCTATTTTGATCCCGAGTATACATCGACAGGAAAACTCACTTTACAAAGTGATGTTTATGCATTTGGAGTGGTTCTTCTTGAACTTCTGACTGGACGTCAAGCCCTGGACCTAAACCAAGGACCAAATGATCAAAATCTTGTATTGCAGGTAAGGCACATATTAAATGATCGGAAGAAGCTGCGTAAGGTCATAGATCCTGAGCTGGGTCGAAGTTCATACACCATGGAATCTATAGTTATGTTTGCAAACCTGGCATCACGATGTGTGCGTCCTGACAGCAGTGAAAGACCCTCCATGGCTGAATGTGTACAAGAACTGCAGTTGATTATCATTACAAATGCCAAAGGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

354

Amino Acids

39.9

Weight (kDa)

9.29

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 280	1.9e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	68 - 269	2.3e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030
fragaria_vesca	FvH4_4g34900 FvH4_4g34900 FvH4_4g34900 FvH4_4g34900
malus_domestica	MD13G1088100.v1.1 MD16G1088500.v1.1
prunus_persica	Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1
pyrus_communis	pycom13g07590 pycom16g07570
rosa_chinensis	RchiOBHm_Chr4g0444341
rosa_laevigata	RLG00000005839
rosa_multiflora	Rmu_sc0002841.1_g000011
rosa_roxburghii	Rroxscaffold_5G00384880
rosa_rugosa	Rorug04G0351600 Rorug04G0351700
rosa_samantha	Rh4AG412400 Rh4BG423900 Rh4DG419100
rosa_wichuraiana	Rw4G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	805
Acc36I	ACCTGC	2 cut(s)	450, 844
AccB1I	GGYRCC	1 cut(s)	132
AccI	GTMKAC	3 cut(s)	234, 336, 725
AclWI	GGATC	3 cut(s)	523, 710, 896
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	320, 650
AcyI	GRCGYC	1 cut(s)	802
AdeI	CACNNNGTG	1 cut(s)	971
AfaI	GTAC	4 cut(s)	677, 693, 700, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	367, 911
AgeI	ACCGGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	586, 620, 788
AhdI	GACNNNNNGTC	1 cut(s)	801
AjnI	CCWGG	2 cut(s)	810, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	3 cut(s)	286, 886, 910
AluI	AGCT	3 cut(s)	286, 886, 910
Alw26I	GTCTC	2 cut(s)	22, 495
AlwI	GGATC	3 cut(s)	523, 710, 896
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	64, 226
ApeKI	GCWGC	3 cut(s)	286, 302, 886
ApoI	RAATTY	2 cut(s)	320, 650
AsiGI	ACCGGT	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	36, 252
AspS9I	GGNCC	4 cut(s)	42, 65, 814, 827
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	3 cut(s)	42, 814, 827
BanI	GGYRCC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	273, 314, 873
BccI	CCATC	3 cut(s)	144, 274, 389
BceAI	ACGGC	2 cut(s)	213, 539
BciT130I	CCWGG	2 cut(s)	812, 959
BclI	TGATCA	3 cut(s)	106, 355, 835
BcoDI	GTCTC	2 cut(s)	22, 495
BfmI	CTRYAG	3 cut(s)	428, 939, 1025
BfuAI	ACCTGC	2 cut(s)	450, 844
BisI	GCNGC	3 cut(s)	287, 303, 887
BlpI	GCTNAGC	1 cut(s)	529
BlsI	GCNGC	3 cut(s)	288, 304, 888
BmcAI	AGTACT	1 cut(s)	693
Bme1390I	CCNGG	2 cut(s)	812, 959
Bme18I	GGWCC	3 cut(s)	42, 814, 827
BmeRI	GACNNNNNGTC	1 cut(s)	801
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	4 cut(s)	42, 65, 814, 827
BmiI	GGNNCC	2 cut(s)	134, 440
BmrFI	CCNGG	2 cut(s)	812, 959
BmsI	GCATC	2 cut(s)	598, 971
Bpu10I	CCTNAGC	2 cut(s)	253, 906
Bpu1102I	GCTNAGC	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	679
BsaBI	GATNNNNATC	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	802
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	5 cut(s)	68, 810, 823, 930, 1002
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 911
Bse118I	RCCGGY	2 cut(s)	82, 405
Bse1I	ACTGG	2 cut(s)	546, 802
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	2 cut(s)	812, 959
BseDI	CCNNGG	5 cut(s)	68, 810, 823, 930, 1002
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	2 cut(s)	367, 911
BseMII	CTCAG	4 cut(s)	33, 267, 514, 897
BseNI	ACTGG	2 cut(s)	546, 802
BseXI	GCAGC	3 cut(s)	273, 314, 873
BseYI	CCCAGC	1 cut(s)	910
BshFI	GGCC	2 cut(s)	66, 228
BshNI	GGYRCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	2 cut(s)	83, 406
BslI	CCNNNNNNNGG	2 cut(s)	367, 911
BsmAI	GTCTC	2 cut(s)	22, 495
BsnI	GGCC	2 cut(s)	66, 228
Bso31I	GGTCTC	1 cut(s)	495
BsoBI	CYCGRG	1 cut(s)	719
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
Bsp1720I	GCTNAGC	1 cut(s)	529
Bsp19I	CCATGG	2 cut(s)	930, 1002
BspANI	GGCC	2 cut(s)	66, 228
BspCNI	CTCAG	4 cut(s)	32, 266, 513, 898
BspLI	GGNNCC	2 cut(s)	134, 440
BspMAI	CTGCAG	2 cut(s)	432, 1029
BspMI	ACCTGC	2 cut(s)	450, 844
BspPI	GGATC	3 cut(s)	523, 710, 896
BspT107I	GGYRCC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	495
BsrFI	RCCGGY	2 cut(s)	82, 405
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	2 cut(s)	546, 802
BssAI	RCCGGY	2 cut(s)	82, 405
BssECI	CCNNGG	5 cut(s)	68, 810, 823, 930, 1002
BssMI	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
BssNAI	GTATAC	2 cut(s)	235, 726
BssNI	GRCGYC	1 cut(s)	802
BssT1I	CCWWGG	4 cut(s)	68, 823, 930, 1002
Bst1107I	GTATAC	2 cut(s)	235, 726
Bst2UI	CCWGG	2 cut(s)	812, 959
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	802
BstAUI	TGTACA	1 cut(s)	1015
BstBAI	YACGTR	1 cut(s)	679
BstC8I	GCNNGC	2 cut(s)	401, 645
BstDEI	CTNAG	5 cut(s)	19, 253, 500, 529, 906
BstDSI	CCRYGG	2 cut(s)	930, 1002
BstHHI	GCGC	2 cut(s)	36, 252
BstKTI	GATC	8 cut(s)	109, 358, 451, 518, 718, 838, 877, 904
BstMAI	GTCTC	2 cut(s)	22, 495
BstMBI	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	859, 959
BstNI	CCWGG	2 cut(s)	812, 959
BstSCI	CCNGG	2 cut(s)	810, 957
BstSFI	CTRYAG	3 cut(s)	428, 939, 1025
BstV1I	GCAGC	3 cut(s)	273, 314, 873
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BstZ17I	GTATAC	2 cut(s)	235, 726
BsuRI	GGCC	2 cut(s)	66, 228
BtgI	CCRYGG	2 cut(s)	930, 1002
BtsI	GCAGTG	1 cut(s)	994
BtsIMutI	CAGTG	3 cut(s)	156, 199, 994
BveI	ACCTGC	2 cut(s)	450, 844
Cac8I	GCNNGC	2 cut(s)	401, 645
CfoI	GCGC	2 cut(s)	36, 252
Cfr10I	RCCGGY	2 cut(s)	82, 405
Cfr13I	GGNCC	4 cut(s)	42, 65, 814, 827
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	4 cut(s)	676, 692, 699, 1016
CspAI	ACCGGT	1 cut(s)	405
CviAII	CATG	4 cut(s)	24, 140, 931, 1003
CviQI	GTAC	4 cut(s)	676, 692, 699, 1016
DdeI	CTNAG	5 cut(s)	19, 253, 500, 529, 906
DpnI	GATC	8 cut(s)	108, 357, 450, 517, 717, 837, 876, 903
DpnII	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
DraI	TTTAAA	1 cut(s)	456
DraIII	CACNNNGTG	1 cut(s)	971
DriI	GACNNNNNGTC	1 cut(s)	801
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	4 cut(s)	68, 823, 930, 1002
Eco31I	GGTCTC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	630
Eco47I	GGWCC	3 cut(s)	42, 814, 827
Eco88I	CYCGRG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	810, 957
EcoRV	GATATC	1 cut(s)	630
EcoT14I	CCWWGG	4 cut(s)	68, 823, 930, 1002
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	4 cut(s)	68, 823, 930, 1002
FaeI	CATG	4 cut(s)	27, 143, 934, 1006
FatI	CATG	4 cut(s)	23, 139, 930, 1002
FbaI	TGATCA	3 cut(s)	106, 355, 835
FblI	GTMKAC	3 cut(s)	234, 336, 725
Fnu4HI	GCNGC	3 cut(s)	287, 303, 887
Fsp4HI	GCNGC	3 cut(s)	287, 303, 887
GlaI	GCGC	2 cut(s)	35, 251
GluI	GCNGC	3 cut(s)	287, 303, 887
GsaI	CCCAGC	1 cut(s)	914
HaeIII	GGCC	2 cut(s)	66, 228
HapII	CCGG	2 cut(s)	83, 406
HgaI	GACGC	1 cut(s)	965
HhaI	GCGC	2 cut(s)	36, 252
Hin1I	GRCGYC	1 cut(s)	802
Hin1II	CATG	4 cut(s)	27, 143, 934, 1006
Hin6I	GCGC	2 cut(s)	34, 250
HinP1I	GCGC	2 cut(s)	34, 250
HinfI	GANTC	2 cut(s)	462, 935
HpaII	CCGG	2 cut(s)	83, 406
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	6 cut(s)	156, 235, 337, 574, 726, 1016
Hpy188I	TCNGA	5 cut(s)	378, 503, 634, 795, 879
Hpy188III	TCNNGA	7 cut(s)	255, 343, 719, 785, 905, 966, 980
Hpy8I	GTNNAC	6 cut(s)	156, 235, 337, 574, 726, 1016
HpyAV	CCTTC	1 cut(s)	33
HpyCH4IV	ACGT	2 cut(s)	678, 802
HpyCH4V	TGCA	6 cut(s)	430, 445, 767, 853, 953, 1027
HpyF10VI	GCNNNNNNNGC	2 cut(s)	859, 959
HpyF3I	CTNAG	5 cut(s)	19, 253, 500, 529, 906
HpySE526I	ACGT	2 cut(s)	678, 802
Hsp92I	GRCGYC	1 cut(s)	802
Hsp92II	CATG	4 cut(s)	27, 143, 934, 1006
HspAI	GCGC	2 cut(s)	34, 250
Ksp22I	TGATCA	3 cut(s)	106, 355, 835
Kzo9I	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	3 cut(s)	273, 314, 873
LweI	GCATC	2 cut(s)	598, 971
MaeII	ACGT	2 cut(s)	678, 802
MaeIII	GTNAC	2 cut(s)	194, 679
MalI	GATC	8 cut(s)	108, 357, 450, 517, 717, 837, 876, 903
MboI	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
MboII	GAAGA	5 cut(s)	136, 177, 185, 773, 892
MflI	RGATCY	1 cut(s)	901
MluCI	AATT	2 cut(s)	320, 650
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	8 cut(s)	126, 169, 212, 233, 253, 300, 655, 1009
Mph1103I	ATGCAT	1 cut(s)	769
MseI	TTAA	3 cut(s)	296, 455, 869
MslI	CAYNNNNRTG	3 cut(s)	138, 456, 967
MspI	CCGG	2 cut(s)	83, 406
MspR9I	CCNGG	2 cut(s)	812, 959
MvaI	CCWGG	2 cut(s)	812, 959
MwoI	GCNNNNNNNGC	2 cut(s)	859, 959
NcoI	CCATGG	2 cut(s)	930, 1002
NdeII	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
NlaIII	CATG	4 cut(s)	27, 143, 934, 1006
NlaIV	GGNNCC	2 cut(s)	134, 440
NmuCI	GTSAC	2 cut(s)	194, 679
NsiI	ATGCAT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	973
PfeI	GAWTC	2 cut(s)	462, 935
PinAI	ACCGGT	1 cut(s)	405
PkrI	GCNGC	3 cut(s)	288, 304, 888
Ppu21I	YACGTR	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	810, 957
PspFI	CCCAGC	1 cut(s)	910
PspGI	CCWGG	2 cut(s)	810, 957
PspN4I	GGNNCC	2 cut(s)	134, 440
PspPI	GGNCC	4 cut(s)	42, 65, 814, 827
PstI	CTGCAG	2 cut(s)	432, 1029
PsuI	RGATCY	1 cut(s)	901
RsaI	GTAC	4 cut(s)	677, 693, 700, 1017
RsaNI	GTAC	4 cut(s)	676, 692, 699, 1016
RseI	CAYNNNNRTG	3 cut(s)	138, 456, 967
SaqAI	TTAA	3 cut(s)	296, 455, 869
SatI	GCNGC	3 cut(s)	287, 303, 887
Sau3AI	GATC	8 cut(s)	106, 355, 448, 515, 715, 835, 874, 901
Sau96I	GGNCC	4 cut(s)	42, 65, 814, 827
ScaI	AGTACT	1 cut(s)	693
ScrFI	CCNGG	2 cut(s)	812, 959
SfaNI	GCATC	2 cut(s)	598, 971
SfcI	CTRYAG	3 cut(s)	428, 939, 1025
SinI	GGWCC	3 cut(s)	42, 814, 827
SmiI	ATTTAAAT	1 cut(s)	456
SmiMI	CAYNNNNRTG	3 cut(s)	138, 456, 967
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	2 cut(s)	320, 650
StyD4I	CCNGG	2 cut(s)	810, 957
StyI	CCWWGG	4 cut(s)	68, 823, 930, 1002
SwaI	ATTTAAAT	1 cut(s)	456
TaiI	ACGT	2 cut(s)	681, 805
TaqI	TCGA	3 cut(s)	102, 731, 916
TasI	AATT	2 cut(s)	320, 650
TatI	WGTACW	2 cut(s)	691, 1015
TfiI	GAWTC	2 cut(s)	462, 935
Tru1I	TTAA	3 cut(s)	296, 455, 869
Tru9I	TTAA	3 cut(s)	296, 455, 869
TscAI	CASTG	3 cut(s)	156, 199, 994
TseFI	GTSAC	2 cut(s)	194, 679
TseI	GCWGC	3 cut(s)	286, 302, 886
Tsp45I	GTSAC	2 cut(s)	194, 679
TspDTI	ATGAA	3 cut(s)	177, 435, 912
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	3 cut(s)	156, 199, 994
VpaK11BI	GGWCC	3 cut(s)	42, 814, 827
XapI	RAATTY	2 cut(s)	320, 650
XmiI	GTMKAC	3 cut(s)	234, 336, 725
ZraI	GACGTC	1 cut(s)	803
ZrmI	AGTACT	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.