Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006340

Physical Location & Seq

Genomic Coordinates Forward (+)

64099872 .. 64102097

Gene Structure 2226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAGAGGCAACATCTTCATTCAGTGACAAGAACTTTCTTGGGAAAGGAGGATTTGGCCGCGTATATAGAGGAACTTTGCGCTCAGGAGAGGTTGTAGCAATTAAAAAGATGGAGCTGCCTCCCTTTAAAGCAGCTGACGGAGAACGAGAATTTCGGGTAGAAGTAGACATCTTGAGCAGACTTGATCACCCAAATTTGGTTTCTTTGATAGGCTATTGTGCTGATGGCAAGCACCGGTTTTTAGTATATGAATACCTGCAGAAAGGGAACCTGCAAGATCACTTAAATGGAATTAATGAGAAACACAAAATGGGTTGGCCTCAAAGGCTCAGAGTGGCACTTGGAGCAGCAAGGGGCTTAGCATATCTACATTCGAGTTCAACTCCTATTGTTCACAGAGATTTCAAATCCACCAACATTCTTTTAGATGCCAACTTTGAAGCAAAAATATCCGATTTTGGGCTTGCCAAGTTGATGCCAGAGGGAAAGGAAATGTATGTGACTGCTAGAGTACTTGGCACATTCGGCTATTTTGATCCGGAGTATACATCGACAGGAAAACTCACTTTACAGAGTGATGTTTATGCATTTGGAGTGGTTCTTCTCGAACTTCTGACTGGACGTCAAGCCCTGGACCTAAACCAAGGACCAAATGATCAAAATCTTGTACTACAGGTAAAGCACATATTAAATGATCGGAAGAAGCTGCGTAAGGTCATAGATCCTGAGCTGGCTCGAAGTTCATACACCATGGAATCTATAGTTATGTTTGCAAACCTGGCATCACGATGTGTGCGTCCTGACAGCAATGAAAGACCCTCCATGGCTGAATGTGTAAAAGAACTGCAGTTGATTATCATTACAAATGCAAAAGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

32.95

Weight (kDa)

8.81

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 281	5e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	12 - 283	1.2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030
fragaria_vesca	FvH4_4g34900 FvH4_4g34900 FvH4_4g34900 FvH4_4g34900
malus_domestica	MD13G1088100.v1.1 MD16G1088500.v1.1
prunus_persica	Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1
pyrus_communis	pycom13g07590 pycom16g07570
rosa_chinensis	RchiOBHm_Chr4g0444341
rosa_laevigata	RLG00000005839
rosa_multiflora	Rmu_sc0002841.1_g000011
rosa_roxburghii	Rroxscaffold_5G00384880
rosa_rugosa	Rorug04G0351600 Rorug04G0351700
rosa_samantha	Rh4AG412400 Rh4BG423900 Rh4DG419100
rosa_wichuraiana	Rw4G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	628
Acc36I	ACCTGC	2 cut(s)	267, 282
AccI	GTMKAC	2 cut(s)	168, 548
AccII	CGCG	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	533, 719
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	152, 196
AcyI	GRCGYC	1 cut(s)	625
AdeI	CACNNNGTG	1 cut(s)	794
AfaI	GTAC	2 cut(s)	516, 672
AfiI	CCNNNNNNNGG	2 cut(s)	199, 462
AgeI	ACCGGT	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	384, 409, 443
AhdI	GACNNNNNGTC	1 cut(s)	624
AjnI	CCWGG	2 cut(s)	633, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	4 cut(s)	118, 137, 709, 733
AluI	AGCT	4 cut(s)	118, 137, 709, 733
AlwI	GGATC	2 cut(s)	533, 719
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	2 cut(s)	58, 320
ApeKI	GCWGC	4 cut(s)	118, 134, 350, 709
ApoI	RAATTY	2 cut(s)	152, 196
AseI	ATTAAT	1 cut(s)	297
AsiGI	ACCGGT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	637, 650
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	637, 650
BbvI	GCAGC	4 cut(s)	105, 146, 362, 696
BccI	CCATC	2 cut(s)	106, 221
BciT130I	CCWGG	2 cut(s)	635, 782
BclI	TGATCA	2 cut(s)	187, 658
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	4 cut(s)	260, 674, 762, 848
BfuAI	ACCTGC	2 cut(s)	267, 282
BglI	GCCNNNNNGGC	1 cut(s)	328
BisI	GCNGC	5 cut(s)	61, 119, 135, 351, 710
BlpI	GCTNAGC	1 cut(s)	361
BlsI	GCNGC	5 cut(s)	62, 120, 136, 352, 711
BmcAI	AGTACT	1 cut(s)	516
Bme1390I	CCNGG	2 cut(s)	635, 782
Bme18I	GGWCC	2 cut(s)	637, 650
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmgT120I	GGNCC	2 cut(s)	637, 650
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	2 cut(s)	635, 782
BmsI	GCATC	3 cut(s)	421, 468, 794
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
Bpu10I	CCTNAGC	2 cut(s)	85, 729
Bpu1102I	GCTNAGC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	625
BsaJI	CCNNGG	4 cut(s)	633, 646, 753, 825
BsaWI	WCCGGW	2 cut(s)	237, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 462
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	817
Bse8I	GATNNNNATC	1 cut(s)	663
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	635, 782
BseDI	CCNNGG	4 cut(s)	633, 646, 753, 825
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	2 cut(s)	199, 462
BseMI	GCAATG	1 cut(s)	817
BseMII	CTCAG	3 cut(s)	99, 346, 720
BseNI	ACTGG	1 cut(s)	625
BseXI	GCAGC	4 cut(s)	105, 146, 362, 696
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	60, 322
BshTI	ACCGGT	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	238, 542
BslI	CCNNNNNNNGG	2 cut(s)	199, 462
BsnI	GGCC	2 cut(s)	60, 322
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
Bsp1720I	GCTNAGC	1 cut(s)	361
Bsp19I	CCATGG	2 cut(s)	753, 825
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	60, 322
BspCNI	CTCAG	3 cut(s)	98, 345, 721
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	272
BspMAI	CTGCAG	2 cut(s)	264, 852
BspMI	ACCTGC	2 cut(s)	267, 282
BspPI	GGATC	2 cut(s)	533, 719
BsrDI	GCAATG	1 cut(s)	817
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	633, 646, 753, 825
BssMI	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
BssNAI	GTATAC	1 cut(s)	549
BssNI	GRCGYC	1 cut(s)	625
BssT1I	CCWWGG	3 cut(s)	646, 753, 825
Bst1107I	GTATAC	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	635, 782
BstACI	GRCGYC	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	233, 468, 735
BstDEI	CTNAG	4 cut(s)	85, 332, 361, 729
BstDSI	CCRYGG	2 cut(s)	753, 825
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	6 cut(s)	190, 283, 541, 661, 700, 727
BstMBI	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 347, 528, 782
BstNI	CCWGG	2 cut(s)	635, 782
BstSCI	CCNGG	2 cut(s)	633, 780
BstSFI	CTRYAG	4 cut(s)	260, 674, 762, 848
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	105, 146, 362, 696
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BstZ17I	GTATAC	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	60, 322
BtgI	CCRYGG	2 cut(s)	753, 825
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	2 cut(s)	267, 282
Cac8I	GCNNGC	3 cut(s)	233, 468, 735
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	637, 650
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	515, 671
CspAI	ACCGGT	1 cut(s)	237
CviAII	CATG	2 cut(s)	754, 826
CviQI	GTAC	2 cut(s)	515, 671
DdeI	CTNAG	4 cut(s)	85, 332, 361, 729
DpnI	GATC	6 cut(s)	189, 282, 540, 660, 699, 726
DpnII	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
DraI	TTTAAA	1 cut(s)	130
DraIII	CACNNNGTG	1 cut(s)	794
DriI	GACNNNNNGTC	1 cut(s)	624
EaeI	YGGCCR	1 cut(s)	58
Eam1105I	GACNNNNNGTC	1 cut(s)	624
Eco130I	CCWWGG	3 cut(s)	646, 753, 825
Eco47I	GGWCC	2 cut(s)	637, 650
EcoRII	CCWGG	2 cut(s)	633, 780
EcoT14I	CCWWGG	3 cut(s)	646, 753, 825
EcoT22I	ATGCAT	1 cut(s)	592
ErhI	CCWWGG	3 cut(s)	646, 753, 825
FaeI	CATG	2 cut(s)	757, 829
FatI	CATG	2 cut(s)	753, 825
FbaI	TGATCA	2 cut(s)	187, 658
FblI	GTMKAC	2 cut(s)	168, 548
Fnu4HI	GCNGC	5 cut(s)	61, 119, 135, 351, 710
Fsp4HI	GCNGC	5 cut(s)	61, 119, 135, 351, 710
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	5 cut(s)	61, 119, 135, 351, 710
HaeIII	GGCC	2 cut(s)	60, 322
HapII	CCGG	2 cut(s)	238, 542
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	2 cut(s)	757, 829
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	758
HpaII	CCGG	2 cut(s)	238, 542
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	169, 397, 549
Hpy188I	TCNGA	4 cut(s)	335, 457, 618, 702
Hpy188III	TCNNGA	7 cut(s)	87, 175, 542, 608, 728, 789, 803
Hpy8I	GTNNAC	3 cut(s)	169, 397, 549
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	6 cut(s)	262, 277, 590, 776, 850, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 347, 528, 782
HpyF3I	CTNAG	4 cut(s)	85, 332, 361, 729
HpySE526I	ACGT	1 cut(s)	625
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	2 cut(s)	757, 829
HspAI	GCGC	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	541
Ksp22I	TGATCA	2 cut(s)	187, 658
Kzo9I	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
LmnI	GCTCC	2 cut(s)	115, 347
Lsp1109I	GCAGC	4 cut(s)	105, 146, 362, 696
LweI	GCATC	3 cut(s)	421, 468, 794
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	2 cut(s)	26, 502
MalI	GATC	6 cut(s)	189, 282, 540, 660, 699, 726
MboI	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
MboII	GAAGA	4 cut(s)	9, 17, 596, 715
MflI	RGATCY	1 cut(s)	724
MluCI	AATT	4 cut(s)	102, 152, 196, 294
MnlI	CCTC	7 cut(s)	44, 65, 85, 132, 333, 478, 832
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	541
MseI	TTAA	5 cut(s)	105, 129, 287, 297, 692
MslI	CAYNNNNRTG	2 cut(s)	288, 790
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	238, 542
MspR9I	CCNGG	2 cut(s)	635, 782
MvaI	CCWGG	2 cut(s)	635, 782
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	328, 347, 528, 782
NcoI	CCATGG	2 cut(s)	753, 825
NdeII	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
NlaIII	CATG	2 cut(s)	757, 829
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	26, 502
NsiI	ATGCAT	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	758
PinAI	ACCGGT	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	62, 120, 136, 352, 711
PshBI	ATTAAT	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	633, 780
PspGI	CCWGG	2 cut(s)	633, 780
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	637, 650
PstI	CTGCAG	2 cut(s)	264, 852
PsuI	RGATCY	1 cut(s)	724
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	516, 672
RsaNI	GTAC	2 cut(s)	515, 671
RseI	CAYNNNNRTG	2 cut(s)	288, 790
SaqAI	TTAA	5 cut(s)	105, 129, 287, 297, 692
SatI	GCNGC	5 cut(s)	61, 119, 135, 351, 710
Sau3AI	GATC	6 cut(s)	187, 280, 538, 658, 697, 724
Sau96I	GGNCC	2 cut(s)	637, 650
ScaI	AGTACT	1 cut(s)	516
ScrFI	CCNGG	2 cut(s)	635, 782
SfaNI	GCATC	3 cut(s)	421, 468, 794
SfcI	CTRYAG	4 cut(s)	260, 674, 762, 848
SinI	GGWCC	2 cut(s)	637, 650
SmiMI	CAYNNNNRTG	2 cut(s)	288, 790
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	4 cut(s)	102, 152, 196, 294
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	633, 780
StyI	CCWWGG	3 cut(s)	646, 753, 825
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	4 cut(s)	377, 554, 609, 739
TasI	AATT	4 cut(s)	102, 152, 196, 294
TatI	WGTACW	2 cut(s)	514, 670
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	5 cut(s)	105, 129, 287, 297, 692
Tru9I	TTAA	5 cut(s)	105, 129, 287, 297, 692
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	26, 502
TseI	GCWGC	4 cut(s)	118, 134, 350, 709
Tsp45I	GTSAC	2 cut(s)	26, 502
TspDTI	ATGAA	4 cut(s)	9, 267, 735, 828
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	637, 650
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	2 cut(s)	152, 196
XmiI	GTMKAC	2 cut(s)	168, 548
XspI	CTAG	1 cut(s)	510
ZraI	GACGTC	1 cut(s)	626
ZrmI	AGTACT	1 cut(s)	516
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.