Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006340

Physical Location & Seq

Genomic Coordinates Reverse (-)

52356067 .. 52357112

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0351600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAACAATAATAATAATATATCTATGGGATTTTCATGTGGAAGTCATTATTATGATGGAGAAGAACCTGAAGTTCCTCTGATAAATGAAACAAAGAGGTGTGCTGCTATGGATGTTCAAGTTCATAATGAGCTTCATGAAGGTGAAGTAGAACTATTTGACTTTGAATTCTGGCCCATTGAACATCCTTCAGAGCCGCCCGATGAGGATCACCCTCTGAAATGCCCAATGCCGGACTCTTCTGTCATCAATGATGGAGGAACAGGAAGGGTTTCTGAGAGCAACTATAACAGCTCAATGCCGCGTAAGAGATCAGAAGTTTCTTCTGCTGCATTTATGGATGAGATGGTAGATCAGCCTCCTGTTCCGGTTCCTGTTCCGGTTCGAGCAGTGCGGAAGAGGCATCACACTCTCACCCGCGGCGGGGGTGACCATATCATATCCCCTCTGAGGAGAATGCCGCCCCATCCGCCTCGCCCTCTACCGGCTCAGAGCATCACCGTCTTTCAAATGCTTCAGCAGCTGGACAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

178

Amino Acids

20.0

Weight (kDa)

5.29

Isoelectric Point (pI)

82.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030 AT1G24030
fragaria_vesca	FvH4_4g34900 FvH4_4g34900 FvH4_4g34900 FvH4_4g34900
malus_domestica	MD13G1088100.v1.1 MD16G1088500.v1.1
prunus_persica	Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1 Prupe.1G258200_v2.0.a1
pyrus_communis	pycom13g07590 pycom16g07570
rosa_chinensis	RchiOBHm_Chr4g0444341
rosa_laevigata	RLG00000005839
rosa_multiflora	Rmu_sc0002841.1_g000011
rosa_roxburghii	Rroxscaffold_5G00384880
rosa_rugosa	Rorug04G0351600 Rorug04G0351700
rosa_samantha	Rh4AG412400 Rh4BG423900 Rh4DG419100
rosa_wichuraiana	Rw4G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AccII	CGCG	2 cut(s)	304, 420
AciI	CCGC	8 cut(s)	197, 302, 394, 418, 420, 423, 461, 470
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	3 cut(s)	90, 174, 500
AfiI	CCNNNNNNNGG	5 cut(s)	232, 423, 424, 450, 484
AgsI	TTSAA	4 cut(s)	119, 167, 182, 509
AluBI	AGCT	3 cut(s)	133, 294, 523
AluI	AGCT	3 cut(s)	133, 294, 523
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	523
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	104, 329, 520
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	5 cut(s)	155, 203, 406, 440, 490
BbvI	GCAGC	3 cut(s)	91, 316, 532
BccI	CCATC	4 cut(s)	50, 248, 340, 474
BisI	GCNGC	7 cut(s)	105, 197, 302, 330, 421, 461, 521
BlsI	GCNGC	7 cut(s)	106, 198, 303, 331, 422, 462, 522
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	2 cut(s)	412, 504
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	2 cut(s)	367, 379
Bsc4I	CCNNNNNNNGG	5 cut(s)	232, 423, 424, 450, 484
Bse118I	RCCGGY	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	4 cut(s)	118, 184, 346, 466
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	5 cut(s)	232, 423, 424, 450, 484
BseMII	CTCAG	3 cut(s)	267, 440, 503
BseRI	GAGGAG	1 cut(s)	466
BseXI	GCAGC	3 cut(s)	91, 316, 532
Bsh1236I	CGCG	2 cut(s)	304, 420
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	4 cut(s)	233, 368, 380, 485
BslI	CCNNNNNNNGG	5 cut(s)	232, 423, 424, 450, 484
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	208, 311, 352
BspACI	CCGC	8 cut(s)	197, 302, 394, 418, 420, 423, 461, 470
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	3 cut(s)	268, 441, 502
BspFNI	CGCG	2 cut(s)	304, 420
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	3 cut(s)	208, 311, 352
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	2 cut(s)	244, 392
BstDEI	CTNAG	3 cut(s)	276, 449, 489
BstDSI	CCRYGG	1 cut(s)	418
BstEII	GGTNACC	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	118, 184, 346, 466
BstFNI	CGCG	2 cut(s)	304, 420
BstKTI	GATC	3 cut(s)	211, 314, 355
BstMBI	GATC	3 cut(s)	208, 311, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	400, 469, 520
BstPI	GGTNACC	1 cut(s)	428
BstUI	CGCG	2 cut(s)	304, 420
BstV1I	GCAGC	3 cut(s)	91, 316, 532
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	4 cut(s)	118, 184, 346, 466
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	523
CciI	TCATGA	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	174
Cfr42I	CCGCGG	1 cut(s)	421
CviAII	CATG	2 cut(s)	36, 137
CviJI	RGCY	7 cut(s)	133, 175, 196, 294, 358, 488, 523
CviKI_1	RGCY	7 cut(s)	133, 175, 196, 294, 358, 488, 523
DdeI	CTNAG	3 cut(s)	276, 449, 489
DpnI	GATC	3 cut(s)	210, 313, 354
DpnII	GATC	3 cut(s)	208, 311, 352
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
Eam1104I	CTCTTC	2 cut(s)	244, 392
EarI	CTCTTC	2 cut(s)	244, 392
EciI	GGCGGA	1 cut(s)	459
Eco57I	CTGAAG	3 cut(s)	90, 174, 500
Eco91I	GGTNACC	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	167
FaeI	CATG	2 cut(s)	39, 140
FatI	CATG	2 cut(s)	35, 136
FauI	CCCGC	2 cut(s)	416, 425
Fnu4HI	GCNGC	7 cut(s)	105, 197, 302, 330, 421, 461, 521
FokI	GGATG	4 cut(s)	125, 171, 353, 453
Fsp4HI	GCNGC	7 cut(s)	105, 197, 302, 330, 421, 461, 521
GluI	GCNGC	7 cut(s)	105, 197, 302, 330, 421, 461, 521
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	4 cut(s)	233, 368, 380, 485
Hin1II	CATG	2 cut(s)	39, 140
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	4 cut(s)	233, 368, 380, 485
HphI	GGTGA	5 cut(s)	155, 203, 406, 440, 490
Hpy188I	TCNGA	7 cut(s)	81, 193, 219, 277, 316, 450, 492
Hpy188III	TCNNGA	2 cut(s)	137, 534
HpyAV	CCTTC	3 cut(s)	134, 198, 261
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	400, 469, 520
HpyF3I	CTNAG	3 cut(s)	276, 449, 489
Hsp92II	CATG	2 cut(s)	39, 140
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	208, 311, 352
Lsp1109I	GCAGC	3 cut(s)	91, 316, 532
LweI	GCATC	2 cut(s)	412, 504
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	3 cut(s)	210, 313, 354
MboI	GATC	3 cut(s)	208, 311, 352
MboII	GAAGA	4 cut(s)	74, 231, 315, 409
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	271
MslI	CAYNNNNRTG	2 cut(s)	51, 141
MspA1I	CMGCKG	2 cut(s)	420, 523
MspI	CCGG	4 cut(s)	233, 368, 380, 485
Mva1269I	GAATGC	1 cut(s)	462
MvnI	CGCG	2 cut(s)	304, 420
MwoI	GCNNNNNNNGC	3 cut(s)	400, 469, 520
NdeII	GATC	3 cut(s)	208, 311, 352
NlaIII	CATG	2 cut(s)	39, 140
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	428
PagI	TCATGA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	271
PkrI	GCNGC	7 cut(s)	106, 198, 303, 331, 422, 462, 522
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	523
RseI	CAYNNNNRTG	2 cut(s)	51, 141
SacII	CCGCGG	1 cut(s)	421
SatI	GCNGC	7 cut(s)	105, 197, 302, 330, 421, 461, 521
Sau3AI	GATC	3 cut(s)	208, 311, 352
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	230
SetI	ASST	6 cut(s)	70, 101, 135, 145, 296, 525
SfaNI	GCATC	2 cut(s)	412, 504
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	51, 141
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	8 cut(s)	197, 302, 394, 418, 420, 423, 461, 470
TaaI	ACNGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	167
TauI	GCSGC	4 cut(s)	199, 304, 423, 463
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	3 cut(s)	104, 329, 520
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	6 cut(s)	17, 24, 102, 113, 125, 153
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.