AT1G24180

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011104
Physical Location & Seq
Reverse (-)
8560420 .. 8563502
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24180.1

Sequence Viewer

Length: 1182 bp
ATGGCGTTATCACGACTTTCTTCACGATCCAACACTTTCCTAAAGCCGGCGATTACCGCCTTGCCCTCCTCCATCCGCCGTCATGTTTCCACAGACTCATCACCGATCACAATCGAAACCGCCGTCCCTTTCACATCGCATCTATGTGAATCACCGTCACGCTCCGTCGAGACTTCATCGGAGGAGATCTTAGCCTTTTTCCGTGACATGGCTCGGATGAGGAGGATGGAGATCGCAGCAGATTCTCTTTACAAGGCGAAGCTGATCCGTGGGTTCTGTCATTTGTACGATGGTCAAGAGGCTTTAGCGGTGGGAATGGAAGCGGCGATTACCAAAAAAGATGCGATTATCACATCGTATCGTGATCACTGTACTTTCATTGGTCGTGGTGGGAAGCTTGTTGATGCTTTCTCTGAGCTTATGGGGAGAAAAACTGGTTGTTCTCATGGTAAAGGAGGATCTATGCATTTCTATAAGAAAGATGCTTCCTTTTATGGTGGACATGGGATTGTTGGTGCTCAGATTCCATTGGGATGTGGTTTGGCTTTTGCTCAGAAGTATAATAAGGATGAGGCTGTGACTTTTGCTTTGTATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAGGCCTTGAACATTTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATTATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCAAGCGTGGAGATTATGTTCCTGGCTTGAAGGTGGATGGTATGGATGCACTGGCTGTGAAACAGGCGTGCAAGTTTGCCAAGGAGCATGCTCTCAAGAATGGTCCTATTATCCTTGAGATGGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAGGACATGGAGAAAGAGATAAGGAAAGAAGTAGATGACGCCGTAGCTCAGGCCAAGGAGAGCCCGATACCAGATGCATCTGAGCTATTCACAAACATGTACGTGAAAGACTGCGGAGTTGAGTCGTTTGGAGCAGACAGAAAAGAACTCAAAGTAACACTTCCATAG

Protein Analysis

393

Amino Acids

43.36

Weight (kDa)

8.02

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 68 - 364 2.6e-120 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24180 AT1G59900 AT1G59900
fragaria_vesca FvH4_4g35280
malus_domestica MD13G1084800.v1.1 MD16G1083900.v1.1
prunus_persica Prupe.1G262100_v2.0.a1
pyrus_communis pycom13g07330 pycom16g07290
rosa_chinensis RchiOBHm_Chr4g0444881
rosa_laevigata RLG00000005792
rosa_multiflora Rmu_co8512837.1_g000001 Rmu_sc0006845.1_g000004
rosa_roxburghii Rroxscaffold_5G00385370
rosa_rugosa Rorug04G0355800
rosa_samantha Rh4AG417500 Rh4BG429300 Rh4CG444000 Rh4DG425200
rosa_wichuraiana Rw4G035780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 57, 76, 120, 308, 323, 1128
AclWI GGATC 4 cut(s) 21, 259, 466, 947
AcyI GRCGYC 1 cut(s) 1053
AfaI GTAC 4 cut(s) 287, 373, 916, 1115
AfiI CCNNNNNNNGG 3 cut(s) 46, 208, 859
AflII CTTAAG 1 cut(s) 1013
AflIII ACRYGT 1 cut(s) 1110
AgsI TTSAA 4 cut(s) 637, 742, 769, 962
AjnI CCWGG 2 cut(s) 760, 898
AloI GAACNNNNNNTCC 2 cut(s) 741, 773
AluBI AGCT 7 cut(s) 262, 397, 418, 998, 1012, 1061, 1099
AluI AGCT 7 cut(s) 262, 397, 418, 998, 1012, 1061, 1099
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 3 cut(s) 164, 732, 934
AlwI GGATC 4 cut(s) 21, 259, 466, 947
AoxI GGCC 2 cut(s) 630, 1065
ApeKI GCWGC 2 cut(s) 236, 605
ArsI GACNNNNNNTTYG 4 cut(s) 108, 140, 571, 603
AspS9I GGNCC 1 cut(s) 842
AsuHPI GGTGA 3 cut(s) 93, 144, 608
AvaII GGWCC 1 cut(s) 842
BaeI ACNNNNGTAYC 2 cut(s) 865, 898
BanII GRGCYC 1 cut(s) 1079
BauI CACGAG 1 cut(s) 918
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 2 cut(s) 248, 592
BccI CCATC 6 cut(s) 80, 220, 284, 593, 770, 853
BceAI ACGGC 4 cut(s) 63, 107, 720, 1040
BciT130I CCWGG 2 cut(s) 762, 900
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 164, 732, 934
BfrI CTTAAG 1 cut(s) 1013
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 237, 324, 606
BlsI GCNGC 3 cut(s) 238, 325, 607
Bme1390I CCNGG 2 cut(s) 762, 900
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 842
BmrFI CCNGG 2 cut(s) 762, 900
BmsI GCATC 7 cut(s) 148, 331, 394, 472, 775, 1078, 1100
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 818, 875
BsaAI YACGTR 1 cut(s) 1117
BsaBI GATNNNNATC 2 cut(s) 110, 230
BsaHI GRCGYC 1 cut(s) 1053
BsaJI CCNNGG 5 cut(s) 268, 819, 877, 898, 1068
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 208, 859
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 439, 795
Bse8I GATNNNNATC 2 cut(s) 110, 230
BseBI CCWGG 2 cut(s) 762, 900
BseDI CCNNGG 5 cut(s) 268, 819, 877, 898, 1068
BseGI GGATG 7 cut(s) 72, 222, 231, 539, 574, 781, 790
BseJI GATNNNNATC 2 cut(s) 110, 230
BseLI CCNNNNNNNGG 3 cut(s) 46, 208, 859
BseMII CTCAG 5 cut(s) 405, 533, 566, 1076, 1086
BseNI ACTGG 2 cut(s) 439, 795
BseRI GAGGAG 3 cut(s) 58, 197, 235
BseXI GCAGC 2 cut(s) 248, 592
BshFI GGCC 2 cut(s) 632, 1067
BsiHKAI GWGCWC 1 cut(s) 520
BsiSI CCGG 2 cut(s) 47, 731
BslFI GGGAC 2 cut(s) 110, 630
BslI CCNNNNNNNGG 3 cut(s) 46, 208, 859
BsmAI GTCTC 3 cut(s) 164, 732, 934
BsmFI GGGAC 2 cut(s) 110, 630
BsnI GGCC 2 cut(s) 632, 1067
Bsp1286I GDGCHC 2 cut(s) 520, 1079
Bsp143I GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
BspACI CCGC 6 cut(s) 57, 76, 120, 308, 323, 1128
BspANI GGCC 2 cut(s) 632, 1067
BspCNI CTCAG 5 cut(s) 406, 532, 565, 1075, 1087
BspHI TCATGA 1 cut(s) 988
BspPI GGATC 4 cut(s) 21, 259, 466, 947
BspTI CTTAAG 1 cut(s) 1013
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 2 cut(s) 439, 795
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 5 cut(s) 268, 819, 877, 898, 1068
BssMI GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
BssNI GRCGYC 1 cut(s) 1053
BssSI CACGAG 1 cut(s) 918
BssT1I CCWWGG 2 cut(s) 819, 1068
Bst2BI CACGAG 1 cut(s) 918
Bst2UI CCWGG 2 cut(s) 762, 900
Bst4CI ACNGT 5 cut(s) 156, 371, 621, 881, 914
BstACI GRCGYC 1 cut(s) 1053
BstAFI CTTAAG 1 cut(s) 1013
BstBAI YACGTR 1 cut(s) 1117
BstC8I GCNNGC 4 cut(s) 48, 663, 808, 828
BstDEI CTNAG 7 cut(s) 190, 414, 519, 552, 723, 1062, 1095
BstDSI CCRYGG 2 cut(s) 268, 877
BstF5I GGATG 7 cut(s) 72, 222, 231, 539, 574, 781, 790
BstKTI GATC 8 cut(s) 29, 108, 189, 234, 267, 367, 461, 955
BstMAI GTCTC 3 cut(s) 164, 732, 934
BstMBI GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
BstMWI GCNNNNNNNGC 2 cut(s) 56, 976
BstNI CCWGG 2 cut(s) 762, 900
BstNSI RCATGY 2 cut(s) 830, 1114
BstSCI CCNGG 2 cut(s) 760, 898
BstV1I GCAGC 2 cut(s) 248, 592
BstX2I RGATCY 2 cut(s) 186, 458
BstYI RGATCY 2 cut(s) 186, 458
BsuRI GGCC 2 cut(s) 632, 1067
BtgI CCRYGG 2 cut(s) 268, 877
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 7 cut(s) 72, 222, 231, 539, 574, 781, 790
BtsIMutI CAGTG 2 cut(s) 367, 788
Cac8I GCNNGC 4 cut(s) 48, 663, 808, 828
CciI TCATGA 1 cut(s) 988
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 842
CseI GACGC 1 cut(s) 1061
Csp6I GTAC 4 cut(s) 286, 372, 915, 1114
CviAII CATG 9 cut(s) 83, 208, 446, 503, 711, 827, 989, 1021, 1111
CviQI GTAC 4 cut(s) 286, 372, 915, 1114
DdeI CTNAG 7 cut(s) 190, 414, 519, 552, 723, 1062, 1095
DpnI GATC 8 cut(s) 28, 107, 188, 233, 266, 366, 460, 954
DpnII GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
EciI GGCGGA 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 819, 1068
Eco147I AGGCCT 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 1079
Eco47I GGWCC 1 cut(s) 842
EcoRII CCWGG 2 cut(s) 760, 898
EcoT14I CCWWGG 2 cut(s) 819, 1068
EcoT22I ATGCAT 2 cut(s) 468, 1093
EcoT38I GRGCYC 1 cut(s) 1079
ErhI CCWWGG 2 cut(s) 819, 1068
FaeI CATG 9 cut(s) 86, 211, 449, 506, 714, 830, 992, 1024, 1114
FalI AAGNNNNNCTT 3 cut(s) 965, 997, 1158
FaqI GGGAC 2 cut(s) 110, 630
FatI CATG 9 cut(s) 82, 207, 445, 502, 710, 826, 988, 1020, 1110
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 237, 324, 606
FokI GGATG 7 cut(s) 59, 229, 238, 546, 581, 788, 797
FriOI GRGCYC 1 cut(s) 1079
Fsp4HI GCNGC 3 cut(s) 237, 324, 606
GluI GCNGC 3 cut(s) 237, 324, 606
HaeIII GGCC 2 cut(s) 632, 1067
HapII CCGG 2 cut(s) 47, 731
HgaI GACGC 1 cut(s) 1061
Hin1I GRCGYC 1 cut(s) 1053
Hin1II CATG 9 cut(s) 86, 211, 449, 506, 714, 830, 992, 1024, 1114
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 7 cut(s) 95, 149, 242, 523, 610, 667, 1136
HpaII CCGG 2 cut(s) 47, 731
HphI GGTGA 3 cut(s) 93, 144, 608
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 7 cut(s) 181, 216, 415, 522, 555, 895, 1096
Hpy188III TCNNGA 8 cut(s) 12, 24, 169, 296, 362, 835, 920, 989
Hpy8I GTNNAC 1 cut(s) 500
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 763
HpyCH4III ACNGT 5 cut(s) 156, 371, 621, 881, 914
HpyCH4IV ACGT 1 cut(s) 1116
HpyCH4V TGCA 4 cut(s) 466, 788, 810, 1091
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 976
HpyF3I CTNAG 7 cut(s) 190, 414, 519, 552, 723, 1062, 1095
HpySE526I ACGT 1 cut(s) 1116
Hsp92I GRCGYC 1 cut(s) 1053
Hsp92II CATG 9 cut(s) 86, 211, 449, 506, 714, 830, 992, 1024, 1114
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
LmnI GCTCC 3 cut(s) 167, 823, 1145
Lsp1109I GCAGC 2 cut(s) 248, 592
LweI GCATC 7 cut(s) 148, 331, 394, 472, 775, 1078, 1100
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 5 cut(s) 156, 203, 577, 881, 1168
MalI GATC 8 cut(s) 28, 107, 188, 233, 266, 366, 460, 954
MboI GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
MboII GAAGA 1 cut(s) 12
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 2 cut(s) 186, 458
MhlI GDGCHC 2 cut(s) 520, 1079
MluCI AATT 1 cut(s) 957
MlyI GAGTC 2 cut(s) 89, 1145
MmeI TCCRAC 1 cut(s) 54
Mph1103I ATGCAT 2 cut(s) 468, 1093
MroNI GCCGGC 1 cut(s) 46
MseI TTAA 2 cut(s) 983, 1014
MslI CAYNNNNRTG 4 cut(s) 144, 532, 1109, 1115
MspCI CTTAAG 1 cut(s) 1013
MspI CCGG 2 cut(s) 47, 731
MspR9I CCNGG 2 cut(s) 762, 900
MunI CAATTG 1 cut(s) 957
MvaI CCWGG 2 cut(s) 762, 900
MwoI GCNNNNNNNGC 2 cut(s) 56, 976
NaeI GCCGGC 1 cut(s) 48
NdeII GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 9 cut(s) 86, 211, 449, 506, 714, 830, 992, 1024, 1114
NmuCI GTSAC 4 cut(s) 156, 203, 577, 881
NsiI ATGCAT 2 cut(s) 468, 1093
NspI RCATGY 2 cut(s) 830, 1114
PaeI GCATGC 1 cut(s) 830
PagI TCATGA 1 cut(s) 988
PceI AGGCCT 1 cut(s) 632
PciI ACATGT 1 cut(s) 1110
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 48
PfeI GAWTC 5 cut(s) 149, 242, 523, 610, 667
PkrI GCNGC 3 cut(s) 238, 325, 607
PleI GAGTC 2 cut(s) 89, 1144
PpsI GAGTC 2 cut(s) 89, 1144
Ppu21I YACGTR 1 cut(s) 1117
PscI ACATGT 1 cut(s) 1110
Psp6I CCWGG 2 cut(s) 760, 898
PspGI CCWGG 2 cut(s) 760, 898
PspPI GGNCC 1 cut(s) 842
PsuI RGATCY 2 cut(s) 186, 458
RsaI GTAC 4 cut(s) 287, 373, 916, 1115
RsaNI GTAC 4 cut(s) 286, 372, 915, 1114
RseI CAYNNNNRTG 4 cut(s) 144, 532, 1109, 1115
SaqAI TTAA 2 cut(s) 983, 1014
SatI GCNGC 3 cut(s) 237, 324, 606
Sau3AI GATC 8 cut(s) 26, 105, 186, 231, 264, 364, 458, 952
Sau96I GGNCC 1 cut(s) 842
SchI GAGTC 2 cut(s) 89, 1145
ScrFI CCNGG 2 cut(s) 762, 900
SduI GDGCHC 2 cut(s) 520, 1079
SfaNI GCATC 7 cut(s) 148, 331, 394, 472, 775, 1078, 1100
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 4 cut(s) 144, 532, 1109, 1115
SmlI CTYRAG 3 cut(s) 833, 854, 1013
SmoI CTYRAG 3 cut(s) 833, 854, 1013
SphI GCATGC 1 cut(s) 830
Sse9I AATT 1 cut(s) 957
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 6 cut(s) 57, 76, 120, 308, 323, 1128
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 2 cut(s) 760, 898
StyI CCWWGG 2 cut(s) 819, 1068
TaaI ACNGT 5 cut(s) 156, 371, 621, 881, 914
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 2 cut(s) 114, 168
TasI AATT 1 cut(s) 957
TatI WGTACW 1 cut(s) 371
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 5 cut(s) 149, 242, 523, 610, 667
Tru1I TTAA 2 cut(s) 983, 1014
Tru9I TTAA 2 cut(s) 983, 1014
TscAI CASTG 2 cut(s) 374, 795
TseFI GTSAC 4 cut(s) 156, 203, 577, 881
TseI GCWGC 2 cut(s) 236, 605
Tsp45I GTSAC 4 cut(s) 156, 203, 577, 881
TspDTI ATGAA 3 cut(s) 165, 367, 939
TspGWI ACGGA 3 cut(s) 154, 191, 257
TspRI CASTG 2 cut(s) 374, 795
Vha464I CTTAAG 1 cut(s) 1013
VpaK11BI GGWCC 1 cut(s) 842
XceI RCATGY 2 cut(s) 830, 1114
Zsp2I ATGCAT 2 cut(s) 468, 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.