Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011104

Physical Location & Seq

Genomic Coordinates Forward (+)

22051133 .. 22053885

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G59900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTCTATCACGCCTCTCATCACGATCCAACATCATCACTCGTCCCTTCTCCGCCGCCTTCAGCCGATTAATCTCAACGGACACAACTCCGATCACAATCGAGACTTCGCTTCCTTTCACAGCTCACTTATGTGATCCACCGTCACGCTCCGTCGAATCATCGAGTCAAGAGCTTCTCGATTTCTTCAGAACCATGGCGTTGATGCGACGTATGGAAATCGCAGCCGATTCGCTTTACAAAGCGAAGCTAATCCGAGGGTTTTGTCATCTCTACGACGGCCAAGAAGCTGTAGCTATAGGCATGGAAGCTGCGATTACAAAGAAAGACGCGATTATTACTGCTTATCGTGATCACTGTATTTTCTTAGGTCGTGGTGGTTCGCTTCATGAGGTTTTCTCAGAGCTTATGGGAAGACAAGCTGGTTGTTCTAAAGGGAAAGGTGGATCTATGCACTTCTATAAGAAGGAATCGTCGTTTTACGGTGGTCATGGGATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATTGCTTTTGCTCAGAAGTATAACAAGGAAGAGGCTGTCACATTTGCTTTGTATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAAGCTTTGAATATTTCTGCTCTTTGGGATTTGCCTGCAATTTTGGTCTGCGAGAACAATCACTATGGAATGGGAACTGCTGAATGGAGAGCCGCTAAGAGTCCATCTTACTACAAGCGTGGTGATTATGTTCCTGGACTCAAGGTAGATGGTATGGATGCATTTGCTGTCAAACAAGCTTGCAAATTTGCTAAGCAGCATGCGTTGGAGAAGGGGCCAATAATTCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAAGAAGCTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGAAATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGGATTGCCCAATGCCAGAGCCTTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGTCATTTGGACCTGACAGAAAAGAAGTCAAAGCTTCCCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008270 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0031974 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

E1_dh

Protein Analysis

389

Amino Acids

43.06

Weight (kDa)

7.15

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	65 - 360	2.9e-125	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24180 AT1G59900 AT1G59900
fragaria_vesca	FvH4_4g35280
malus_domestica	MD13G1084800.v1.1 MD16G1083900.v1.1
prunus_persica	Prupe.1G262100_v2.0.a1
pyrus_communis	pycom13g07330 pycom16g07290
rosa_chinensis	RchiOBHm_Chr4g0444881
rosa_laevigata	RLG00000005792
rosa_multiflora	Rmu_co8512837.1_g000001 Rmu_sc0006845.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385370
rosa_rugosa	Rorug04G0355800
rosa_samantha	Rh4AG417500 Rh4BG429300 Rh4CG444000 Rh4DG425200
rosa_wichuraiana	Rw4G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	861
AccB1I	GGYRCC	2 cut(s)	861, 1118
AccII	CGCG	1 cut(s)	332
AciI	CCGC	3 cut(s)	54, 57, 708
AclWI	GGATC	6 cut(s)	21, 131, 454, 878, 935, 948
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	800
AcuI	CTGAAG	2 cut(s)	46, 172
AcyI	GRCGYC	1 cut(s)	1041
AfaI	GTAC	3 cut(s)	863, 904, 969
AflII	CTTAAG	1 cut(s)	1001
AgsI	TTSAA	2 cut(s)	617, 625
AjnI	CCWGG	2 cut(s)	748, 886
AleI	CACNNNNGTG	1 cut(s)	132
Alw21I	GWGCWC	3 cut(s)	508, 896, 1089
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	6 cut(s)	21, 131, 454, 878, 935, 948
Ama87I	CYCGRG	1 cut(s)	906
AoxI	GGCC	2 cut(s)	280, 830
ApeKI	GCWGC	4 cut(s)	224, 311, 593, 811
ApoI	RAATTY	1 cut(s)	800
AseI	ATTAAT	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	861
AspS9I	GGNCC	2 cut(s)	830, 1133
AsuHPI	GGTGA	2 cut(s)	596, 749
AvaI	CYCGRG	1 cut(s)	906
AvaII	GGWCC	1 cut(s)	1133
BaeI	ACNNNNGTAYC	2 cut(s)	853, 886
BamHI	GGATCC	1 cut(s)	940
BanI	GGYRCC	2 cut(s)	861, 1118
BanII	GRGCYC	1 cut(s)	1089
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	3 cut(s)	508, 896, 1089
BbvI	GCAGC	4 cut(s)	236, 298, 580, 823
BccI	CCATC	4 cut(s)	581, 727, 758, 841
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	2 cut(s)	750, 888
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	983
BfmI	CTRYAG	2 cut(s)	291, 297
BfrI	CTTAAG	1 cut(s)	1001
BisI	GCNGC	6 cut(s)	57, 225, 312, 594, 708, 812
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	6 cut(s)	58, 226, 313, 595, 709, 813
Bme1390I	CCNGG	2 cut(s)	750, 888
Bme18I	GGWCC	1 cut(s)	1133
BmeT110I	CYCGRG	1 cut(s)	906
BmgT120I	GGNCC	2 cut(s)	830, 1133
BmiI	GGNNCC	5 cut(s)	513, 831, 863, 942, 1120
BmrFI	CCNGG	2 cut(s)	750, 888
BmsI	GCATC	2 cut(s)	195, 763
BpiI	GAAGAC	1 cut(s)	421
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
Bpu10I	CCTNAGC	2 cut(s)	507, 1056
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	2 cut(s)	740, 863
BsaBI	GATNNNNATC	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	1041
BsaJI	CCNNGG	4 cut(s)	195, 256, 865, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bse3DI	GCAATG	1 cut(s)	1044
Bse8I	GATNNNNATC	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	750, 888
BseDI	CCNNGG	4 cut(s)	195, 256, 865, 887
BseGI	GGATG	1 cut(s)	778
BseJI	GATNNNNATC	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	4 cut(s)	414, 521, 554, 1074
BseXI	GCAGC	4 cut(s)	236, 298, 580, 823
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	282, 832
BshNI	GGYRCC	2 cut(s)	861, 1118
BsiHKAI	GWGCWC	3 cut(s)	508, 896, 1089
BsiHKCI	CYCGRG	1 cut(s)	906
BslFI	GGGAC	2 cut(s)	30, 618
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	30, 618
BsnI	GGCC	2 cut(s)	282, 832
BsoBI	CYCGRG	1 cut(s)	906
Bsp1286I	GDGCHC	3 cut(s)	508, 896, 1089
Bsp143I	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	54, 57, 708
BspANI	GGCC	2 cut(s)	282, 832
BspCNI	CTCAG	4 cut(s)	413, 520, 553, 1075
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	2 cut(s)	388, 976
BspLI	GGNNCC	5 cut(s)	513, 831, 863, 942, 1120
BspPI	GGATC	6 cut(s)	21, 131, 454, 878, 935, 948
BspT107I	GGYRCC	2 cut(s)	861, 1118
BspTI	CTTAAG	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	1044
BssECI	CCNNGG	4 cut(s)	195, 256, 865, 887
BssMI	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
BssNI	GRCGYC	1 cut(s)	1041
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	750, 888
Bst4CI	ACNGT	6 cut(s)	144, 359, 485, 609, 869, 902
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	1041
BstAFI	CTTAAG	1 cut(s)	1001
BstC8I	GCNNGC	3 cut(s)	651, 796, 816
BstDEI	CTNAG	8 cut(s)	367, 400, 507, 540, 711, 807, 1056, 1083
BstDSI	CCRYGG	2 cut(s)	195, 865
BstF5I	GGATG	1 cut(s)	778
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	7 cut(s)	29, 96, 139, 355, 449, 886, 943
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	1084
BstNI	CCWGG	2 cut(s)	750, 888
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	2 cut(s)	748, 886
BstSFI	CTRYAG	2 cut(s)	291, 297
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	4 cut(s)	236, 298, 580, 823
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	2 cut(s)	446, 940
BstYI	RGATCY	2 cut(s)	446, 940
BsuRI	GGCC	2 cut(s)	282, 832
BtgI	CCRYGG	2 cut(s)	195, 865
BtsCI	GGATG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	651, 796, 816
CciI	TCATGA	2 cut(s)	388, 976
Cfr13I	GGNCC	2 cut(s)	830, 1133
CseI	GACGC	2 cut(s)	338, 1049
Csp6I	GTAC	3 cut(s)	862, 903, 968
CviAII	CATG	8 cut(s)	196, 304, 389, 491, 815, 877, 977, 1167
CviQI	GTAC	3 cut(s)	862, 903, 968
DdeI	CTNAG	8 cut(s)	367, 400, 507, 540, 711, 807, 1056, 1083
DpnI	GATC	7 cut(s)	28, 95, 138, 354, 448, 885, 942
DpnII	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	1087
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	1089
Eco32I	GATATC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	1133
Eco53kI	GAGCTC	1 cut(s)	1087
Eco57I	CTGAAG	2 cut(s)	46, 172
Eco88I	CYCGRG	1 cut(s)	906
EcoICRI	GAGCTC	1 cut(s)	1087
EcoRII	CCWGG	2 cut(s)	748, 886
EcoRV	GATATC	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	1089
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	8 cut(s)	199, 307, 392, 494, 818, 880, 980, 1170
FalI	AAGNNNNNCTT	1 cut(s)	1146
FaqI	GGGAC	2 cut(s)	30, 618
FatI	CATG	8 cut(s)	195, 303, 388, 490, 814, 876, 976, 1166
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	6 cut(s)	57, 225, 312, 594, 708, 812
FokI	GGATG	1 cut(s)	785
FriOI	GRGCYC	1 cut(s)	1089
Fsp4HI	GCNGC	6 cut(s)	57, 225, 312, 594, 708, 812
FspBI	CTAG	1 cut(s)	983
GluI	GCNGC	6 cut(s)	57, 225, 312, 594, 708, 812
HaeIII	GGCC	2 cut(s)	282, 832
HgaI	GACGC	2 cut(s)	338, 1049
Hin1I	GRCGYC	1 cut(s)	1041
Hin1II	CATG	8 cut(s)	199, 307, 392, 494, 818, 880, 980, 1170
HindIII	AAGCTT	3 cut(s)	618, 792, 1155
HinfI	GANTC	8 cut(s)	158, 166, 230, 470, 598, 715, 753, 1124
HphI	GGTGA	2 cut(s)	596, 749
Hpy188I	TCNGA	7 cut(s)	93, 191, 257, 403, 543, 883, 1084
Hpy188III	TCNNGA	8 cut(s)	24, 103, 170, 179, 350, 389, 842, 977
Hpy99I	CGWCG	4 cut(s)	158, 213, 281, 478
HpyAV	CCTTC	7 cut(s)	58, 70, 460, 820, 1009, 1089, 1102
HpyCH4III	ACNGT	6 cut(s)	144, 359, 485, 609, 869, 902
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	454, 653, 776, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1084
HpyF3I	CTNAG	8 cut(s)	367, 400, 507, 540, 711, 807, 1056, 1083
HpySE526I	ACGT	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	1041
Hsp92II	CATG	8 cut(s)	199, 307, 392, 494, 818, 880, 980, 1170
KpnI	GGTACC	1 cut(s)	865
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
LmnI	GCTCC	2 cut(s)	155, 891
Lsp1109I	GCAGC	4 cut(s)	236, 298, 580, 823
LweI	GCATC	2 cut(s)	195, 763
MaeI	CTAG	1 cut(s)	983
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	3 cut(s)	144, 565, 869
MalI	GATC	7 cut(s)	28, 95, 138, 354, 448, 885, 942
MboI	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
MboII	GAAGA	3 cut(s)	178, 426, 569
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	2 cut(s)	446, 940
MhlI	GDGCHC	3 cut(s)	508, 896, 1089
MluCI	AATT	5 cut(s)	654, 800, 837, 945, 1020
MlyI	GAGTC	4 cut(s)	175, 724, 747, 1133
MmeI	TCCRAC	2 cut(s)	54, 801
MnlI	CCTC	5 cut(s)	26, 251, 385, 553, 921
Mph1103I	ATGCAT	1 cut(s)	778
MseI	TTAA	2 cut(s)	71, 1002
MslI	CAYNNNNRTG	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	1001
MspR9I	CCNGG	2 cut(s)	750, 888
MunI	CAATTG	1 cut(s)	945
MvaI	CCWGG	2 cut(s)	750, 888
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	1084
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
NlaIII	CATG	8 cut(s)	199, 307, 392, 494, 818, 880, 980, 1170
NlaIV	GGNNCC	5 cut(s)	513, 831, 863, 942, 1120
NmuCI	GTSAC	3 cut(s)	144, 565, 869
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	1 cut(s)	818
OliI	CACNNNNGTG	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	818
PagI	TCATGA	2 cut(s)	388, 976
PfeI	GAWTC	4 cut(s)	158, 230, 470, 598
PfoI	TCCNGGA	1 cut(s)	748
PkrI	GCNGC	6 cut(s)	58, 226, 313, 595, 709, 813
PleI	GAGTC	4 cut(s)	174, 723, 747, 1132
PpsI	GAGTC	4 cut(s)	174, 723, 747, 1132
PshBI	ATTAAT	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	1089
Psp6I	CCWGG	2 cut(s)	748, 886
PspGI	CCWGG	2 cut(s)	748, 886
PspN4I	GGNNCC	5 cut(s)	513, 831, 863, 942, 1120
PspPI	GGNCC	2 cut(s)	830, 1133
PsuI	RGATCY	2 cut(s)	446, 940
RsaI	GTAC	3 cut(s)	863, 904, 969
RsaNI	GTAC	3 cut(s)	862, 903, 968
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	1089
SaqAI	TTAA	2 cut(s)	71, 1002
SatI	GCNGC	6 cut(s)	57, 225, 312, 594, 708, 812
Sau3AI	GATC	7 cut(s)	26, 93, 136, 352, 446, 883, 940
Sau96I	GGNCC	2 cut(s)	830, 1133
SchI	GAGTC	4 cut(s)	175, 724, 747, 1133
ScrFI	CCNGG	2 cut(s)	750, 888
SduI	GDGCHC	3 cut(s)	508, 896, 1089
SfaNI	GCATC	2 cut(s)	195, 763
SfcI	CTRYAG	2 cut(s)	291, 297
SinI	GGWCC	1 cut(s)	1133
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	755, 842, 1001
SmoI	CTYRAG	3 cut(s)	755, 842, 1001
SphI	GCATGC	1 cut(s)	818
Sse9I	AATT	5 cut(s)	654, 800, 837, 945, 1020
SsiI	CCGC	3 cut(s)	54, 57, 708
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	1 cut(s)	983
SstI	GAGCTC	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	748, 886
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	6 cut(s)	144, 359, 485, 609, 869, 902
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	4 cut(s)	102, 156, 164, 180
TasI	AATT	5 cut(s)	654, 800, 837, 945, 1020
TauI	GCSGC	2 cut(s)	59, 710
TfiI	GAWTC	4 cut(s)	158, 230, 470, 598
Tru1I	TTAA	2 cut(s)	71, 1002
Tru9I	TTAA	2 cut(s)	71, 1002
TscAI	CASTG	1 cut(s)	362
TseFI	GTSAC	3 cut(s)	144, 565, 869
TseI	GCWGC	4 cut(s)	224, 311, 593, 811
Tsp45I	GTSAC	3 cut(s)	144, 565, 869
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	2 cut(s)	95, 142
TspRI	CASTG	1 cut(s)	362
Vha464I	CTTAAG	1 cut(s)	1001
VpaK11BI	GGWCC	1 cut(s)	1133
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	1 cut(s)	800
XceI	RCATGY	1 cut(s)	818
XspI	CTAG	1 cut(s)	983
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.