RLG00000005792

Pyruvate dehydrogenase E1 component subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
1794405 .. 1797730
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005792

Sequence Viewer

Length: 1191 bp
ATGGCTCTCTCCCGTCTCTCCTCCTCCGCTTCAGGATCCAATCTCCTCAAACCCCTAACCTCCGCCCTCTCCCTCGGCCGCTCCTTCTCCGCCGCCGCCGATGACTCCACCCCCATCACCATCGAGACCTCCCTCCCCTTCACCTCGCACGTGTGCGACGCCCCCTCCCGCGCGGTCGAGACCTCCCCCAAGGAGCTCATGAAGTTCTTCCGCGACATGGCCCTCATGCGCCGCATGGAGATCGCCGCAGACTCTCTCTACAAGTCCAAGCTCATCCGCGGCTTCTGCCACCTCTACGACGGCCAGGAGGCCGTCGCCATCGGCATGGAGGCCGCAATTACCAAAAAGGACTGCATCATCACCGCCTACCGTGACCACTGCACCTTCCTCGGCCGCGGCGGCACCCTCCTCGAGGTCTTCTCCGAGCTTATGGGCCGCCAGGGCGGCTGCTCCAAAGGCAAAGGAGGATCCATGCATTTTTACAAGAAGGATGCCGGGTTCTACGGCGGCCACGGCATCGTCGGAGCTCAGATTCCCCTCGGATGCGGCTTGGCGTTTGCGCAGAAGTACTCTAAGGATGAAACGGTGACGTTTGCGCTCTATGGAGACGGTGCTGCCAATCAGGGACAGCTGTTCGAGGCGCTCAATATCTCTGCCCTTTGGGATTTGCCTGCCATTTTGGTCTGTGAGAACAATCACTATGGAATGGGAACGGCAGAGTGGAGAGCAGCCAAGAGTCCTGCTTATTACAAGCGTGGAGATTATGTTCCTGGCTTGAAGGTAGATGGCATGGATGTGTTTGCTGTGAAACAGGCGTGCAAGTTTGCTAAGGAGCATGCTTTGAAGAATGGACCCATTATTCTTGAAATGGACACTTACAGGTACCATGGTCACTCCATGTCTGATCCTGGGAGCACCTACCGTACACGTGATGAGATCTCTGGCGTGAGACAGGAACGTGATCCAATTGAAAGAATAAGAAAGCTGATATTTGCTCATGATATAGCGACTGAGAAGGAGCTGAAGGATATTGAGAAGGAAATGAGAAAAGAAGTTGATGAAGCCATTGCTCAAGCCAAAGAAAGCCCAATGCCAGATCCCTCTGAACTCTTCACAAATGTGTATGTGAAAGGTTATGGTGTCGAGTCATATGGACCTGATAGGAAAGAAGTCAGGGCTGTGCTTCCATAA

Protein Analysis

397

Amino Acids

43.54

Weight (kDa)

6.8

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 71 - 367 1.2e-121 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 410
Acc16I TGCGCA 1 cut(s) 561
Acc65I GGTACC 1 cut(s) 882
AccB1I GGYRCC 2 cut(s) 401, 882
AccBSI CCGCTC 1 cut(s) 81
AccII CGCG 5 cut(s) 171, 173, 213, 279, 396
AclWI GGATC 7 cut(s) 30, 43, 462, 475, 899, 956, 1091
AcoI YGGCCR 4 cut(s) 76, 301, 391, 508
AcuI CTGAAG 2 cut(s) 15, 1043
AcvI CACGTG 2 cut(s) 151, 929
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 3 cut(s) 569, 884, 925
AfiI CCNNNNNNNGG 2 cut(s) 217, 412
AflIII ACRYGT 2 cut(s) 150, 926
AgsI TTSAA 4 cut(s) 778, 844, 866, 971
AjnI CCWGG 4 cut(s) 303, 438, 769, 907
AleI CACNNNNGTG 1 cut(s) 1118
AloI GAACNNNNNNTCC 4 cut(s) 482, 514, 750, 782
AluBI AGCT 7 cut(s) 196, 271, 427, 527, 631, 985, 1021
AluI AGCT 7 cut(s) 196, 271, 427, 527, 631, 985, 1021
Alw21I GWGCWC 3 cut(s) 198, 529, 917
Alw26I GTCTC 5 cut(s) 20, 119, 173, 600, 943
AlwI GGATC 7 cut(s) 30, 43, 462, 475, 899, 956, 1091
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 8 cut(s) 76, 219, 301, 309, 330, 391, 433, 508
ApeKI GCWGC 3 cut(s) 447, 614, 728
Asp700I GAANNNNTTC 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 882
AspLEI GCGC 5 cut(s) 173, 231, 562, 598, 643
AspS9I GGNCC 4 cut(s) 220, 433, 851, 1154
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 4 cut(s) 109, 133, 352, 598
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 2 cut(s) 851, 1154
BaeI ACNNNNGTAYC 2 cut(s) 874, 907
BamHI GGATCC 2 cut(s) 35, 467
BanI GGYRCC 2 cut(s) 401, 882
BanII GRGCYC 2 cut(s) 198, 529
BbrPI CACGTG 2 cut(s) 151, 929
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 3 cut(s) 198, 529, 917
BbvI GCAGC 3 cut(s) 434, 601, 740
BccI CCATC 4 cut(s) 122, 128, 326, 779
BceAI ACGGC 5 cut(s) 296, 316, 520, 529, 729
BcgI CGANNNNNNTGC 6 cut(s) 223, 257, 370, 391, 404, 425
BciT130I CCWGG 4 cut(s) 305, 440, 771, 909
BcnI CCSGG 1 cut(s) 496
BcoDI GTCTC 5 cut(s) 20, 119, 173, 600, 943
BfoI RGCGCY 1 cut(s) 644
BglI GCCNNNNNGGC 3 cut(s) 399, 441, 444
BglII AGATCT 1 cut(s) 936
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 5 cut(s) 305, 440, 496, 771, 909
Bme18I GGWCC 2 cut(s) 851, 1154
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 4 cut(s) 220, 433, 851, 1154
BmiI GGNNCC 5 cut(s) 37, 403, 469, 853, 884
BmrFI CCNGG 5 cut(s) 305, 440, 496, 771, 909
BmsI GCATC 4 cut(s) 363, 481, 525, 533
BpiI GAAGAC 1 cut(s) 409
BplI GAGNNNNNCTC 2 cut(s) 404, 436
Bpu10I CCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 1056
BpuMI CCSGG 1 cut(s) 496
BsaAI YACGTR 2 cut(s) 151, 929
BsaHI GRCGYC 1 cut(s) 159
BsaI GGTCTC 2 cut(s) 119, 173
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 750, 780
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 412
Bse3DI GCAATG 1 cut(s) 1065
BseBI CCWGG 4 cut(s) 305, 440, 771, 909
BseGI GGATG 5 cut(s) 273, 496, 548, 583, 799
BseLI CCNNNNNNNGG 2 cut(s) 217, 412
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 2 cut(s) 542, 1002
BseRI GAGGAG 4 cut(s) 10, 13, 35, 398
BseX3I CGGCCG 2 cut(s) 76, 391
BseXI GCAGC 3 cut(s) 434, 601, 740
BsgI GTGCAG 1 cut(s) 364
Bsh1236I CGCG 5 cut(s) 171, 173, 213, 279, 396
Bsh1285I CGRYCG 3 cut(s) 79, 177, 394
BshFI GGCC 8 cut(s) 78, 221, 303, 311, 332, 393, 435, 510
BshNI GGYRCC 2 cut(s) 401, 882
BsiEI CGRYCG 3 cut(s) 79, 177, 394
BsiHKAI GWGCWC 3 cut(s) 198, 529, 917
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 2 cut(s) 217, 412
BsmAI GTCTC 5 cut(s) 20, 119, 173, 600, 943
BsmBI CGTCTC 2 cut(s) 20, 600
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 8 cut(s) 78, 221, 303, 311, 332, 393, 435, 510
Bso31I GGTCTC 2 cut(s) 119, 173
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 3 cut(s) 198, 529, 917
Bsp143I GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
Bsp19I CCATGG 1 cut(s) 886
BspANI GGCC 8 cut(s) 78, 221, 303, 311, 332, 393, 435, 510
BspCNI CTCAG 2 cut(s) 541, 1003
BspFNI CGCG 5 cut(s) 171, 173, 213, 279, 396
BspHI TCATGA 2 cut(s) 198, 997
BspLI GGNNCC 5 cut(s) 37, 403, 469, 853, 884
BspPI GGATC 7 cut(s) 30, 43, 462, 475, 899, 956, 1091
BspT107I GGYRCC 2 cut(s) 401, 882
BspTNI GGTCTC 2 cut(s) 119, 173
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 1065
BssMI GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 2 cut(s) 189, 886
Bst2UI CCWGG 4 cut(s) 305, 440, 771, 909
Bst4CI ACNGT 4 cut(s) 371, 586, 611, 923
Bst6I CTCTTC 1 cut(s) 1115
BstACI GRCGYC 1 cut(s) 159
BstBAI YACGTR 2 cut(s) 151, 929
BstC8I GCNNGC 3 cut(s) 672, 817, 837
BstDEI CTNAG 4 cut(s) 528, 573, 828, 1011
BstDSI CCRYGG 4 cut(s) 277, 394, 511, 886
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 5 cut(s) 273, 496, 548, 583, 799
BstFNI CGCG 5 cut(s) 171, 173, 213, 279, 396
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 5 cut(s) 173, 231, 562, 598, 643
BstKTI GATC 7 cut(s) 38, 243, 470, 907, 939, 964, 1099
BstMAI GTCTC 5 cut(s) 20, 119, 173, 600, 943
BstMBI GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
BstMCI CGRYCG 3 cut(s) 79, 177, 394
BstMWI GCNNNNNNNGC 6 cut(s) 285, 399, 441, 444, 456, 513
BstNI CCWGG 4 cut(s) 305, 440, 771, 909
BstNSI RCATGY 1 cut(s) 839
BstSCI CCNGG 5 cut(s) 303, 438, 494, 769, 907
BstUI CGCG 5 cut(s) 171, 173, 213, 279, 396
BstV1I GCAGC 3 cut(s) 434, 601, 740
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 4 cut(s) 35, 467, 936, 1096
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 4 cut(s) 35, 467, 936, 1096
BstZI CGGCCG 2 cut(s) 76, 391
BsuRI GGCC 8 cut(s) 78, 221, 303, 311, 332, 393, 435, 510
BtgI CCRYGG 4 cut(s) 277, 394, 511, 886
BtsCI GGATG 5 cut(s) 273, 496, 548, 583, 799
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 672, 817, 837
CciI TCATGA 2 cut(s) 198, 997
CfoI GCGC 5 cut(s) 173, 231, 562, 598, 643
Cfr13I GGNCC 4 cut(s) 220, 433, 851, 1154
Cfr42I CCGCGG 2 cut(s) 280, 397
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 568, 883, 924
CviQI GTAC 3 cut(s) 568, 883, 924
DdeI CTNAG 4 cut(s) 528, 573, 828, 1011
DpnI GATC 7 cut(s) 37, 242, 469, 906, 938, 963, 1098
DpnII GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
EaeI YGGCCR 4 cut(s) 76, 301, 391, 508
EagI CGGCCG 2 cut(s) 76, 391
Eam1104I CTCTTC 1 cut(s) 1115
EarI CTCTTC 1 cut(s) 1115
EciI GGCGGA 2 cut(s) 52, 79
Ecl136II GAGCTC 2 cut(s) 196, 527
EclXI CGGCCG 2 cut(s) 76, 391
Eco130I CCWWGG 2 cut(s) 189, 886
Eco24I GRGCYC 2 cut(s) 198, 529
Eco31I GGTCTC 2 cut(s) 119, 173
Eco47I GGWCC 2 cut(s) 851, 1154
Eco52I CGGCCG 2 cut(s) 76, 391
Eco53kI GAGCTC 2 cut(s) 196, 527
Eco57I CTGAAG 2 cut(s) 15, 1043
Eco72I CACGTG 2 cut(s) 151, 929
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 2 cut(s) 196, 527
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRII CCWGG 4 cut(s) 303, 438, 769, 907
EcoT14I CCWWGG 2 cut(s) 189, 886
EcoT22I ATGCAT 1 cut(s) 477
EcoT38I GRGCYC 2 cut(s) 198, 529
ErhI CCWWGG 2 cut(s) 189, 886
Esp3I CGTCTC 2 cut(s) 20, 600
FaqI GGGAC 1 cut(s) 639
FauI CCCGC 1 cut(s) 176
FauNDI CATATG 1 cut(s) 1150
FokI GGATG 5 cut(s) 260, 503, 555, 590, 806
FriOI GRGCYC 2 cut(s) 198, 529
FspI TGCGCA 1 cut(s) 561
GlaI GCGC 5 cut(s) 172, 230, 561, 597, 642
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 8 cut(s) 78, 221, 303, 311, 332, 393, 435, 510
HapII CCGG 1 cut(s) 495
HgaI GACGC 1 cut(s) 167
HhaI GCGC 5 cut(s) 173, 231, 562, 598, 643
Hin1I GRCGYC 1 cut(s) 159
Hin6I GCGC 5 cut(s) 171, 229, 560, 596, 641
HinP1I GCGC 5 cut(s) 171, 229, 560, 596, 641
HinfI GANTC 5 cut(s) 104, 251, 532, 736, 1145
HpaII CCGG 1 cut(s) 495
HphI GGTGA 4 cut(s) 109, 133, 352, 598
Hpy166II GTNNAC 1 cut(s) 926
Hpy188I TCNGA 6 cut(s) 424, 524, 531, 542, 904, 1105
Hpy188III TCNNGA 6 cut(s) 33, 124, 178, 199, 863, 998
Hpy8I GTNNAC 1 cut(s) 926
Hpy99I CGWCG 4 cut(s) 161, 302, 317, 524
HpyAV CCTTC 8 cut(s) 94, 148, 394, 481, 772, 1009, 1018, 1030
HpyCH4III ACNGT 4 cut(s) 371, 586, 611, 923
HpyCH4IV ACGT 4 cut(s) 150, 590, 928, 958
HpyCH4V TGCA 4 cut(s) 354, 381, 475, 819
HpyF10VI GCNNNNNNNGC 6 cut(s) 285, 399, 441, 444, 456, 513
HpyF3I CTNAG 4 cut(s) 528, 573, 828, 1011
HpySE526I ACGT 4 cut(s) 150, 590, 928, 958
Hsp92I GRCGYC 1 cut(s) 159
HspAI GCGC 5 cut(s) 171, 229, 560, 596, 641
KpnI GGTACC 1 cut(s) 886
KspI CCGCGG 2 cut(s) 280, 397
Kzo9I GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
LmnI GCTCC 7 cut(s) 86, 193, 455, 524, 832, 912, 1018
Lsp1109I GCAGC 3 cut(s) 434, 601, 740
LweI GCATC 4 cut(s) 363, 481, 525, 533
MaeII ACGT 4 cut(s) 150, 590, 928, 958
MaeIII GTNAC 3 cut(s) 371, 586, 890
MalI GATC 7 cut(s) 37, 242, 469, 906, 938, 963, 1098
MbiI CCGCTC 1 cut(s) 81
MboI GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
MboII GAAGA 4 cut(s) 199, 409, 856, 1102
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 4 cut(s) 35, 467, 936, 1096
MhlI GDGCHC 3 cut(s) 198, 529, 917
MluCI AATT 2 cut(s) 336, 966
MlyI GAGTC 4 cut(s) 98, 245, 745, 1154
MmeI TCCRAC 1 cut(s) 502
Mph1103I ATGCAT 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 206
MslI CAYNNNNRTG 3 cut(s) 323, 794, 1118
MspA1I CMGCKG 3 cut(s) 279, 396, 631
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 5 cut(s) 305, 440, 496, 771, 909
MunI CAATTG 1 cut(s) 966
MvaI CCWGG 4 cut(s) 305, 440, 771, 909
MvnI CGCG 5 cut(s) 171, 173, 213, 279, 396
MwoI GCNNNNNNNGC 6 cut(s) 285, 399, 441, 444, 456, 513
NciI CCSGG 1 cut(s) 496
NcoI CCATGG 1 cut(s) 886
NdeI CATATG 1 cut(s) 1150
NdeII GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
NlaIV GGNNCC 5 cut(s) 37, 403, 469, 853, 884
NmeAIII GCCGAG 2 cut(s) 54, 369
NmuCI GTSAC 3 cut(s) 371, 586, 890
NsbI TGCGCA 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 477
NspI RCATGY 1 cut(s) 839
OliI CACNNNNGTG 1 cut(s) 1118
PaeI GCATGC 1 cut(s) 839
PaeR7I CTCGAG 1 cut(s) 410
PagI TCATGA 2 cut(s) 198, 997
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 532
PleI GAGTC 4 cut(s) 98, 245, 744, 1153
PmaCI CACGTG 2 cut(s) 151, 929
PmlI CACGTG 2 cut(s) 151, 929
PpsI GAGTC 4 cut(s) 98, 245, 744, 1153
Ppu21I YACGTR 2 cut(s) 151, 929
Psp124BI GAGCTC 2 cut(s) 198, 529
Psp6I CCWGG 4 cut(s) 303, 438, 769, 907
PspCI CACGTG 2 cut(s) 151, 929
PspGI CCWGG 4 cut(s) 303, 438, 769, 907
PspN4I GGNNCC 5 cut(s) 37, 403, 469, 853, 884
PspPI GGNCC 4 cut(s) 220, 433, 851, 1154
PspXI VCTCGAGB 1 cut(s) 410
PsuI RGATCY 4 cut(s) 35, 467, 936, 1096
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 3 cut(s) 569, 884, 925
RsaNI GTAC 3 cut(s) 568, 883, 924
RseI CAYNNNNRTG 3 cut(s) 323, 794, 1118
SacI GAGCTC 2 cut(s) 198, 529
SacII CCGCGG 2 cut(s) 280, 397
Sau3AI GATC 7 cut(s) 35, 240, 467, 904, 936, 961, 1096
Sau96I GGNCC 4 cut(s) 220, 433, 851, 1154
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 4 cut(s) 98, 245, 745, 1154
ScrFI CCNGG 5 cut(s) 305, 440, 496, 771, 909
SduI GDGCHC 3 cut(s) 198, 529, 917
SfaNI GCATC 4 cut(s) 363, 481, 525, 533
Sfr274I CTCGAG 1 cut(s) 410
Sfr303I CCGCGG 2 cut(s) 280, 397
SgrBI CCGCGG 2 cut(s) 280, 397
SinI GGWCC 2 cut(s) 851, 1154
SlaI CTCGAG 1 cut(s) 410
SmiMI CAYNNNNRTG 3 cut(s) 323, 794, 1118
SmlI CTYRAG 2 cut(s) 410, 1071
SmoI CTYRAG 2 cut(s) 410, 1071
SphI GCATGC 1 cut(s) 839
Sse9I AATT 2 cut(s) 336, 966
SstI GAGCTC 2 cut(s) 198, 529
StyD4I CCNGG 5 cut(s) 303, 438, 494, 769, 907
StyI CCWWGG 2 cut(s) 189, 886
TaaI ACNGT 4 cut(s) 371, 586, 611, 923
TaiI ACGT 4 cut(s) 153, 593, 931, 961
TaqI TCGA 5 cut(s) 123, 177, 411, 636, 1143
TasI AATT 2 cut(s) 336, 966
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 1 cut(s) 532
TscAI CASTG 1 cut(s) 383
TseFI GTSAC 3 cut(s) 371, 586, 890
TseI GCWGC 3 cut(s) 447, 614, 728
Tsp45I GTSAC 3 cut(s) 371, 586, 890
TspDTI ATGAA 3 cut(s) 215, 594, 1074
TspRI CASTG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 851, 1154
XagI CCTNNNNNAGG 1 cut(s) 410
XceI RCATGY 1 cut(s) 839
XhoI CTCGAG 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.