Rmu_sc0006845.1_g000004

Pyruvate dehydrogenase E1 component subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006845.1
Physical Location & Seq
Forward (+)
30101 .. 33546
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006845.1_g000004.1.cds

Sequence Viewer

Length: 1287 bp
atggctctctcccgtctctcctcctccgcttcaggatccaatctcctcaaacccctcacctccgccctctccctccgccgctccttctccgccgccgatgactccacccccatcaccatcgagacctccctccccttcacctcgcacgtgtgcgacgtcccctcccgcacggtcgagacctcccccaaggagctcatgaagttcttccgcgacatggccctcatgcgccgcatggagatcgccgcagactccctctacaagtccaagctcatccgcggcttctgccacctctacgacggccaggaggccgtcgccatcggcatggaggccgcaattaccaaaaaggactgcatcatcaccgcctaccgtgaccactgcaccttcctcggccgcggcggcaccctcctccaggtcttctccgagctcatgggccgccagggcggctgctccaaaggaaagggaggatccatgcatttttacaagaaggactccggcttctacggcggccacggcatcgtcggagctcaggtcccgctcggatgcggcttggcttttgcgcagaagtactctaaggatgaaacggtgacgtttgcgctctatggagacggtgctgccaatcagggacagctgttcgaggcgctcaatatctctgcgctgtgggatttgcctgccattttggtctgtgagaacaatcactatggaatgggaacggcagagtggagagcagccaagagtcctgcttattacaagcgtggagattatgttcctggcttgaaggtagatggcatggatgtgtttgctgtgaaacaggcgtgcaagtttgctaaggagcatgctttgaagaatggacccattattcttgaaatggacacttacaggtaccatggtcactccatgtctgatcctgggagcacctaccgtacacgtgatgagatctctggcgtgagacaggagcgtgatccaattgaaagaataagaaagctgatatttgctcatgatatagcgactgagaaggagctgaaggatattgagaaggaaatgagaaaagaagttgatgaagccattgctcaagccaaagaaagcccaatgccagatccctctgaactcttcacaaatgtgtatgtgaaaggttatggagtcgagatcatgtccaacatgaactgtgatggaatccgaaacttgttatgggggcatatcccttcccaatcaagtagccactttagtgagcgtttcaacctctttgtaaacgcgcttcgtggtctagagccacttgacttgggtaaatga

Protein Analysis

428

Amino Acids

47.36

Weight (kDa)

7.17

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
Acc16I TGCGCA 1 cut(s) 558
Acc65I GGTACC 1 cut(s) 879
AccB1I GGYRCC 2 cut(s) 398, 879
AccBSI CCGCTC 2 cut(s) 81, 535
AccII CGCG 4 cut(s) 210, 276, 393, 1250
AclWI GGATC 7 cut(s) 30, 43, 459, 472, 896, 953, 1088
AcoI YGGCCR 3 cut(s) 298, 388, 505
AcuI CTGAAG 2 cut(s) 15, 1040
AcvI CACGTG 2 cut(s) 148, 926
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 3 cut(s) 566, 881, 922
AfiI CCNNNNNNNGG 2 cut(s) 214, 409
AflIII ACRYGT 2 cut(s) 147, 923
AgsI TTSAA 5 cut(s) 775, 841, 863, 968, 1234
AjnI CCWGG 5 cut(s) 300, 408, 435, 766, 904
AleI CACNNNNGTG 2 cut(s) 1115, 1221
AloI GAACNNNNNNTCC 2 cut(s) 747, 779
AluBI AGCT 7 cut(s) 193, 268, 424, 524, 628, 982, 1018
AluI AGCT 7 cut(s) 193, 268, 424, 524, 628, 982, 1018
Alw21I GWGCWC 4 cut(s) 195, 426, 526, 914
Alw26I GTCTC 5 cut(s) 20, 116, 170, 597, 940
AlwI GGATC 7 cut(s) 30, 43, 459, 472, 896, 953, 1088
AoxI GGCC 7 cut(s) 216, 298, 306, 327, 388, 430, 505
ApeKI GCWGC 3 cut(s) 444, 611, 725
Asp700I GAANNNNTTC 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 879
AspLEI GCGC 6 cut(s) 228, 559, 595, 640, 655, 1252
AspS9I GGNCC 4 cut(s) 217, 430, 529, 848
AsuHPI GGTGA 5 cut(s) 49, 106, 130, 349, 595
AvaII GGWCC 2 cut(s) 529, 848
BaeI ACNNNNGTAYC 2 cut(s) 871, 904
BamHI GGATCC 2 cut(s) 35, 464
BanI GGYRCC 2 cut(s) 398, 879
BanII GRGCYC 3 cut(s) 195, 426, 526
BarI GAAGNNNNNNTAC 2 cut(s) 1236, 1268
BbrPI CACGTG 2 cut(s) 148, 926
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 4 cut(s) 195, 426, 526, 914
BbvI GCAGC 3 cut(s) 431, 598, 737
BccI CCATC 5 cut(s) 119, 125, 323, 776, 1160
BceAI ACGGC 5 cut(s) 293, 313, 517, 526, 726
BcgI CGANNNNNNTGC 4 cut(s) 220, 254, 367, 401
BciT130I CCWGG 5 cut(s) 302, 410, 437, 768, 906
BcoDI GTCTC 5 cut(s) 20, 116, 170, 597, 940
BfaI CTAG 1 cut(s) 1262
BfoI RGCGCY 1 cut(s) 641
BglI GCCNNNNNGGC 3 cut(s) 396, 438, 441
BglII AGATCT 1 cut(s) 933
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 5 cut(s) 302, 410, 437, 768, 906
Bme18I GGWCC 2 cut(s) 529, 848
BmgT120I GGNCC 4 cut(s) 217, 430, 529, 848
BmiI GGNNCC 6 cut(s) 37, 400, 466, 531, 850, 881
BmrFI CCNGG 5 cut(s) 302, 410, 437, 768, 906
BmsI GCATC 3 cut(s) 360, 522, 530
BpiI GAAGAC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 392
Bpu10I CCTNAGC 2 cut(s) 525, 825
BpuEI CTTGAG 1 cut(s) 1053
BsaAI YACGTR 2 cut(s) 148, 926
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 2 cut(s) 116, 170
BsaJI CCNNGG 8 cut(s) 186, 274, 385, 391, 436, 508, 883, 905
BsaXI ACNNNNNCTCC 6 cut(s) 146, 176, 513, 543, 747, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 409
Bse3DI GCAATG 1 cut(s) 1062
BseBI CCWGG 5 cut(s) 302, 410, 437, 768, 906
BseDI CCNNGG 8 cut(s) 186, 274, 385, 391, 436, 508, 883, 905
BseGI GGATG 4 cut(s) 270, 545, 580, 796
BseLI CCNNNNNNNGG 2 cut(s) 214, 409
BseMI GCAATG 1 cut(s) 1062
BseMII CTCAG 2 cut(s) 539, 999
BseRI GAGGAG 4 cut(s) 10, 13, 35, 395
BseX3I CGGCCG 1 cut(s) 388
BseXI GCAGC 3 cut(s) 431, 598, 737
BsgI GTGCAG 1 cut(s) 361
Bsh1236I CGCG 4 cut(s) 210, 276, 393, 1250
Bsh1285I CGRYCG 2 cut(s) 174, 391
BshFI GGCC 7 cut(s) 218, 300, 308, 329, 390, 432, 507
BshNI GGYRCC 2 cut(s) 398, 879
BsiEI CGRYCG 2 cut(s) 174, 391
BsiHKAI GWGCWC 4 cut(s) 195, 426, 526, 914
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 3 cut(s) 143, 515, 636
BslI CCNNNNNNNGG 2 cut(s) 214, 409
BsmAI GTCTC 5 cut(s) 20, 116, 170, 597, 940
BsmBI CGTCTC 2 cut(s) 20, 597
BsmFI GGGAC 3 cut(s) 143, 515, 636
BsnI GGCC 7 cut(s) 218, 300, 308, 329, 390, 432, 507
Bso31I GGTCTC 2 cut(s) 116, 170
Bsp1286I GDGCHC 4 cut(s) 195, 426, 526, 914
Bsp143I GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
Bsp19I CCATGG 1 cut(s) 883
BspANI GGCC 7 cut(s) 218, 300, 308, 329, 390, 432, 507
BspCNI CTCAG 2 cut(s) 538, 1000
BspFNI CGCG 4 cut(s) 210, 276, 393, 1250
BspHI TCATGA 2 cut(s) 195, 994
BspLI GGNNCC 6 cut(s) 37, 400, 466, 531, 850, 881
BspPI GGATC 7 cut(s) 30, 43, 459, 472, 896, 953, 1088
BspT107I GGYRCC 2 cut(s) 398, 879
BspTNI GGTCTC 2 cut(s) 116, 170
BsrBI CCGCTC 2 cut(s) 81, 535
BsrDI GCAATG 1 cut(s) 1062
BssECI CCNNGG 8 cut(s) 186, 274, 385, 391, 436, 508, 883, 905
BssMI GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 186, 883
Bst2UI CCWGG 5 cut(s) 302, 410, 437, 768, 906
Bst4CI ACNGT 6 cut(s) 172, 368, 583, 608, 920, 1163
Bst6I CTCTTC 1 cut(s) 1112
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 2 cut(s) 148, 926
BstC8I GCNNGC 3 cut(s) 669, 814, 834
BstDEI CTNAG 4 cut(s) 525, 570, 825, 1008
BstDSI CCRYGG 4 cut(s) 274, 391, 508, 883
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 4 cut(s) 270, 545, 580, 796
BstFNI CGCG 4 cut(s) 210, 276, 393, 1250
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 6 cut(s) 228, 559, 595, 640, 655, 1252
BstKTI GATC 8 cut(s) 38, 240, 467, 904, 936, 961, 1096, 1146
BstMAI GTCTC 5 cut(s) 20, 116, 170, 597, 940
BstMBI GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
BstMCI CGRYCG 2 cut(s) 174, 391
BstMWI GCNNNNNNNGC 6 cut(s) 282, 396, 438, 441, 501, 510
BstNI CCWGG 5 cut(s) 302, 410, 437, 768, 906
BstNSI RCATGY 1 cut(s) 836
BstSCI CCNGG 5 cut(s) 300, 408, 435, 766, 904
BstUI CGCG 4 cut(s) 210, 276, 393, 1250
BstV1I GCAGC 3 cut(s) 431, 598, 737
BstV2I GAAGAC 1 cut(s) 406
BstX2I RGATCY 4 cut(s) 35, 464, 933, 1093
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 4 cut(s) 35, 464, 933, 1093
BstZI CGGCCG 1 cut(s) 388
BsuRI GGCC 7 cut(s) 218, 300, 308, 329, 390, 432, 507
BtgI CCRYGG 4 cut(s) 274, 391, 508, 883
BtsCI GGATG 4 cut(s) 270, 545, 580, 796
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 669, 814, 834
CciI TCATGA 2 cut(s) 195, 994
CfoI GCGC 6 cut(s) 228, 559, 595, 640, 655, 1252
Cfr13I GGNCC 4 cut(s) 217, 430, 529, 848
Cfr42I CCGCGG 2 cut(s) 277, 394
Csp6I GTAC 3 cut(s) 565, 880, 921
CspCI CAANNNNNGTGG 1 cut(s) 1257
CviQI GTAC 3 cut(s) 565, 880, 921
DdeI CTNAG 4 cut(s) 525, 570, 825, 1008
DpnI GATC 8 cut(s) 37, 239, 466, 903, 935, 960, 1095, 1145
DpnII GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
EaeI YGGCCR 3 cut(s) 298, 388, 505
EagI CGGCCG 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 1112
EarI CTCTTC 1 cut(s) 1112
EciI GGCGGA 3 cut(s) 52, 65, 79
Ecl136II GAGCTC 3 cut(s) 193, 424, 524
EclXI CGGCCG 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 186, 883
Eco24I GRGCYC 3 cut(s) 195, 426, 526
Eco31I GGTCTC 2 cut(s) 116, 170
Eco47I GGWCC 2 cut(s) 529, 848
Eco52I CGGCCG 1 cut(s) 388
Eco53kI GAGCTC 3 cut(s) 193, 424, 524
Eco57I CTGAAG 2 cut(s) 15, 1040
Eco72I CACGTG 2 cut(s) 148, 926
EcoICRI GAGCTC 3 cut(s) 193, 424, 524
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 5 cut(s) 300, 408, 435, 766, 904
EcoT14I CCWWGG 2 cut(s) 186, 883
EcoT22I ATGCAT 1 cut(s) 474
EcoT38I GRGCYC 3 cut(s) 195, 426, 526
ErhI CCWWGG 2 cut(s) 186, 883
Esp3I CGTCTC 2 cut(s) 20, 597
FaqI GGGAC 3 cut(s) 143, 515, 636
FauI CCCGC 2 cut(s) 173, 540
FokI GGATG 4 cut(s) 257, 552, 587, 803
FriOI GRGCYC 3 cut(s) 195, 426, 526
FspBI CTAG 1 cut(s) 1262
FspI TGCGCA 1 cut(s) 558
GlaI GCGC 6 cut(s) 227, 558, 594, 639, 654, 1251
GsuI CTGGAG 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 7 cut(s) 218, 300, 308, 329, 390, 432, 507
HapII CCGG 1 cut(s) 492
HhaI GCGC 6 cut(s) 228, 559, 595, 640, 655, 1252
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 6 cut(s) 226, 557, 593, 638, 653, 1250
HinP1I GCGC 6 cut(s) 226, 557, 593, 638, 653, 1250
HinfI GANTC 6 cut(s) 101, 248, 488, 733, 1137, 1170
HpaII CCGG 1 cut(s) 492
HphI GGTGA 5 cut(s) 49, 106, 130, 349, 595
Hpy166II GTNNAC 2 cut(s) 923, 1246
Hpy188I TCNGA 6 cut(s) 421, 521, 539, 901, 1102, 1175
Hpy188III TCNNGA 8 cut(s) 33, 121, 175, 196, 860, 995, 1141, 1262
Hpy8I GTNNAC 2 cut(s) 923, 1246
Hpy99I CGWCG 4 cut(s) 158, 299, 314, 521
HpyAV CCTTC 9 cut(s) 94, 145, 391, 478, 769, 1006, 1015, 1027, 1209
HpyCH4III ACNGT 6 cut(s) 172, 368, 583, 608, 920, 1163
HpyCH4IV ACGT 4 cut(s) 147, 156, 587, 925
HpyCH4V TGCA 4 cut(s) 351, 378, 472, 816
HpyF10VI GCNNNNNNNGC 6 cut(s) 282, 396, 438, 441, 501, 510
HpyF3I CTNAG 4 cut(s) 525, 570, 825, 1008
HpySE526I ACGT 4 cut(s) 147, 156, 587, 925
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 6 cut(s) 226, 557, 593, 638, 653, 1250
KpnI GGTACC 1 cut(s) 883
KspI CCGCGG 2 cut(s) 277, 394
Kzo9I GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
LmnI GCTCC 8 cut(s) 86, 190, 452, 521, 829, 909, 952, 1015
Lsp1109I GCAGC 3 cut(s) 431, 598, 737
LweI GCATC 3 cut(s) 360, 522, 530
MaeI CTAG 1 cut(s) 1262
MaeII ACGT 4 cut(s) 147, 156, 587, 925
MaeIII GTNAC 3 cut(s) 368, 583, 887
MalI GATC 8 cut(s) 37, 239, 466, 903, 935, 960, 1095, 1145
MbiI CCGCTC 2 cut(s) 81, 535
MboI GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
MboII GAAGA 4 cut(s) 196, 406, 853, 1099
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 4 cut(s) 35, 464, 933, 1093
MhlI GDGCHC 4 cut(s) 195, 426, 526, 914
MluCI AATT 2 cut(s) 333, 963
MlyI GAGTC 5 cut(s) 95, 242, 482, 742, 1146
MmeI TCCRAC 2 cut(s) 499, 1176
Mph1103I ATGCAT 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 203
MslI CAYNNNNRTG 4 cut(s) 320, 791, 1115, 1221
MspA1I CMGCKG 3 cut(s) 276, 393, 628
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 5 cut(s) 302, 410, 437, 768, 906
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 5 cut(s) 302, 410, 437, 768, 906
MvnI CGCG 4 cut(s) 210, 276, 393, 1250
MwoI GCNNNNNNNGC 6 cut(s) 282, 396, 438, 441, 501, 510
NcoI CCATGG 1 cut(s) 883
NdeII GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
NlaIV GGNNCC 6 cut(s) 37, 400, 466, 531, 850, 881
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 3 cut(s) 368, 583, 887
NsbI TGCGCA 1 cut(s) 558
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 1 cut(s) 836
OliI CACNNNNGTG 2 cut(s) 1115, 1221
PaeI GCATGC 1 cut(s) 836
PagI TCATGA 2 cut(s) 195, 994
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 1170
PleI GAGTC 5 cut(s) 95, 242, 482, 741, 1145
PmaCI CACGTG 2 cut(s) 148, 926
PmlI CACGTG 2 cut(s) 148, 926
PpsI GAGTC 5 cut(s) 95, 242, 482, 741, 1145
Ppu21I YACGTR 2 cut(s) 148, 926
PpuMI RGGWCCY 1 cut(s) 529
Psp124BI GAGCTC 3 cut(s) 195, 426, 526
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 5 cut(s) 300, 408, 435, 766, 904
PspCI CACGTG 2 cut(s) 148, 926
PspGI CCWGG 5 cut(s) 300, 408, 435, 766, 904
PspN4I GGNNCC 6 cut(s) 37, 400, 466, 531, 850, 881
PspPI GGNCC 4 cut(s) 217, 430, 529, 848
PspPPI RGGWCCY 1 cut(s) 529
PsuI RGATCY 4 cut(s) 35, 464, 933, 1093
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 3 cut(s) 566, 881, 922
RsaNI GTAC 3 cut(s) 565, 880, 921
RseI CAYNNNNRTG 4 cut(s) 320, 791, 1115, 1221
SacI GAGCTC 3 cut(s) 195, 426, 526
SacII CCGCGG 2 cut(s) 277, 394
Sau3AI GATC 8 cut(s) 35, 237, 464, 901, 933, 958, 1093, 1143
Sau96I GGNCC 4 cut(s) 217, 430, 529, 848
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 5 cut(s) 95, 242, 482, 742, 1146
ScrFI CCNGG 5 cut(s) 302, 410, 437, 768, 906
SduI GDGCHC 4 cut(s) 195, 426, 526, 914
SfaNI GCATC 3 cut(s) 360, 522, 530
Sfr303I CCGCGG 2 cut(s) 277, 394
SgrBI CCGCGG 2 cut(s) 277, 394
SinI GGWCC 2 cut(s) 529, 848
SmiMI CAYNNNNRTG 4 cut(s) 320, 791, 1115, 1221
SmlI CTYRAG 1 cut(s) 1068
SmoI CTYRAG 1 cut(s) 1068
SphI GCATGC 1 cut(s) 836
Sse9I AATT 2 cut(s) 333, 963
SspMI CTAG 1 cut(s) 1262
SstI GAGCTC 3 cut(s) 195, 426, 526
StyD4I CCNGG 5 cut(s) 300, 408, 435, 766, 904
StyI CCWWGG 2 cut(s) 186, 883
TaaI ACNGT 6 cut(s) 172, 368, 583, 608, 920, 1163
TaiI ACGT 4 cut(s) 150, 159, 590, 928
TaqI TCGA 4 cut(s) 120, 174, 633, 1140
TasI AATT 2 cut(s) 333, 963
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 1 cut(s) 1170
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 3 cut(s) 368, 583, 887
TseI GCWGC 3 cut(s) 444, 611, 725
Tsp45I GTSAC 3 cut(s) 368, 583, 887
TspDTI ATGAA 4 cut(s) 212, 591, 1071, 1172
TspRI CASTG 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 529, 848
XagI CCTNNNNNAGG 1 cut(s) 407
XbaI TCTAGA 1 cut(s) 1261
XceI RCATGY 1 cut(s) 836
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 1262
ZraI GACGTC 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.